Genome-wide association study of haploid male fertility in maize (Zea mays L.)

Frontiers in Plant Science

Volumn 9, Issue , 2018, Pages

  Ma, Hailin ^a,e   Li, Guoliang ^a   Würschum, Tobias ^b   Zhang, Yao ^a   Zheng, Debo ^c   Yang, Xiaohong ^a   Li, Jiansheng ^a   Liu, Wenxin ^a   Yan, Jianbing ^d   Chen, Shaojiang ^a  

^a CHINA AGRICULTURAL UNIVERSITY   (China)

^b UNIVERSITY OF HOHENHEIM   (Germany)

^c Guangxi ASEAN Marine Research Center   (China)

^d HUAZHONG AGRICULTURAL UNIVERSITY   (China)

^e Shanxi Academy of Agricultural Sciences   (China)

Author keywords

Doubled haploids; Genome wide association study; Haploid male fertility; Maize; Single nucleotide polymorphism

Indexed keywords

EID: 85050720892     PISSN: None     EISSN: 1664462X     Source Type: Journal    
DOI: 10.3389/fpls.2018.00974     Document Type: Article

References (38)

1. Barnabás, B., Obert, B., and Kovacs, G. (1999). Colchicine, an efficient genome-doubling agent for maize (Zea mays L.) microspores cultured in anthero. Plant Cell Rep. 18, 858–862. doi: 10.1007/s002990050674
2. Bradbury, P. J., Zhang, Z., Kroon, D. E., Casstevens, T. M., Ramdoss, Y., and Buckler, E. S. (2007). TASSEL: software for association mapping of complex traits in diverse samples. Bioinformatics 23, 2633–2635. doi: 10.1093/bioinformatics/btm308
3. Chalyk, S. T. (1994). Properties of maternal haploid maize plants and potential application to maize breeding. Euphytica 79, 13–18. doi: 10.1007/BF00023571
4. Chase, S. S. (1952a). Production of homozygous diploids of maize from monoploids. Agron. J. 44, 263–267.
5. Chase, S. S. (1952b). Selection for parthenogenesis and monoploid fertility in maize. Genetics 37, 573–574.
6. Cifuentes, M., Rivard, M., Pereira, L., Chelysheva, L., and Mercier, R. (2013). Haploid meiosis in arabidopsis: double-strand breaks are formed and repaired but without synapsis and crossovers. PLoS ONE 8:e72431. doi: 10.1371/journal.pone.0072431
7. De La Fuente, G. N., Frei, U. K., and Lübberstedt, T. (2013). Accelerating plant breeding. Trends Plant Sci. 18, 667–672. doi: 10.1016/j.tplants.2013.09.001
8. Eder, J., and Chalyk, S. (2002). In vivo haploid induction in maize. Theor. Appl. Genet. 104, 703–708. doi: 10.1007/s00122-001-0773-4
9. Fu, J., Cheng, Y., Linghu, J., Yang, X., Kang, L., Zhang, Z., et al. (2013). RNA sequencing reveals the complex regulatory network in the maize kernel. Nat. Commun. 4:2832. doi: 10.1038/ncomms3832
10. Geiger, H. H., Braun, M. D., Gordillo, G. A., Koch, S., Jesse, J., and Krutzfeldt, B. A. E. (2006). Variation for female fertility among haploid maize lines. Maize Genet. Cooper. Newsl. 80, 28–29.
11. Geiger, H. H., and Schönleben, M. (2011). Incidence of male fertility in haploid elite dent maize germplasm. Maize Genet. Cooper. Newsl. 85, 22–32.
12. Häntzschel, K. R., and Weber, G. (2010). Blockage of mitosis in maize root tips using colchicine-alternatives. Protoplasma 241, 99–104. doi: 10.1007/s00709-009-0103-2
13. Henry, Y. (1999). Origin of microspore-derived dihaploid and polyhaploid in vitro plants. Plant Tissue Cult. Biotechnol. 4, 127–135.
14. Hoekstra, S., Van zijderveld, M. H., Heidekamp, F., and Van der mark, F. (1993). Microspore culture of Hordeum-Vulgare L-the influence of density and osmolality. Plant Cell Rep. 12, 661–665. doi: 10.1007/BF00233415
15. Holm, S. (1979). A simple sequentially rejective bonferroni test procedure. Scandinav. J. Statist. 6, 65–70.
16. Jensen, C. J. (1974). “Chromosome doubling techniques in haploids,” in Haploids in Higher Plants: Advances and Potential (The University of Guelph), 151–190.
17. Kato, A. (2002). Chromosome doubling of haploid maize seedlings using nitrous oxide gas at the flower primordial stage. Plant Breed. 121, 370–377. doi: 10.1046/j.1439-0523.2002.743321.x
18. Kleiber, D., Prigge, V., Melchinger, A. E., Burkard, F., San Vicente, F., Palomino, G., et al. (2012). Haploid fertility in temperate and tropical maize germplasm. Crop Sci. 52, 623–630. doi: 10.2135/cropsci2011.07.0395
19. Li, H., Peng, Z. Y., Yang, X., Wang, W., Fu, J., Wang, J., et al. (2013). Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels. Nat. Genet. 45, 43–50. doi: 10.1038/ng.2484
20. Li, Q., Yang, X., Xu, S., Cai, Y., Zhang, D., Han, Y., et al. (2012). Genome-wide association studies identified three independent polymorphisms associated with alpha-tocopherol content in maize kernels. PLoS ONE 7:e36807. doi: 10.1371/journal.pone.00 36807
21. Liu, D., and Zhao, Y. (2010). Research on the natural doubling effects of different genotypes in different sowing-season of maize haploid. Chin. Agric. Sci. Bull. 26, 37–39.
22. Liu, K. J., and Muse, S. V. (2005). PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics 21, 2128–2129. doi: 10.1093/bioinformatics/bti282
23. Pintos, B., Manzanera, J. A., and Bueno, M. A. (2007). Antimitotic agents increase the production of doubled-haploid embryos from cork oak anther culture. J. Plant Physiol. 164, 1595–1604. doi: 10.1016/j.jplph.2006.11.012
24. Poole, R. W. (1974). Introduction to Quantitative Ecology. NewYork, NY: McGraw-Hill.
25. Pritchard, J. K., Stephens, M., Rosenberg, N. A., and Donnelly, P. (2000). Association mapping in structured populations. Am. J. Hum. Genet. 67, 170–181. doi: 10.1086/302959
26. Ren, J. J., Wu, P. H., Tian, X. L., Lubberstedt, T., and Chen, S. J. (2017). QTL mapping for haploid male fertility by a segregation distortion method and fine mapping of a key QTL qhmf4 in maize. Theor. Appl. Genet. 130, 1349–1359. doi: 10.1007/s00122-017-2892-6
27. Team, R. C. (2012). R: A Language and Environment for Statistical Computing. Vienna. Available online at: http://www.R-project.org
28. Testillano, P., Georgiev, S., Mogensen, H. L., Coronado, M.J., Dumas, C., Risueno, M. C., et al. (2004). Spontaneous chromosome doubling results from nuclear fusion during in vitro maize induced microspore embryogenesis. Chromosoma 112, 342–349. doi: 10.1007/s00412-004-0279-3
29. Vanous, A. E. (2011). Optimization of Doubled Haploid Production in Maize (Zea mays L.). Graduate Theses and Dissertations. Available online at: https://lib.dr. iastate.edu/etd/11974/
30. Wu, P. H., Ren, J. J., Li, L., and Chen, S. J. (2014). Early spontaneous diploidization of maternal maize haploids generated by in vivo haploid induction. Euphytica 200, 127–138. doi: 10.1007/s10681-014-1166-5
31. Wu, P. H., Ren, J. J., Tian, X. L., Lubberstedt, T., Li, W., Li, G. L., et al. (2017). New insights into the genetics of haploid male fertility in maize. Crop Sci. 57, 637–647. doi: 10.2135/cropsci2016.01.0017
32. Würschum, T., Tucker, M. R., Reif, J. C., and Maurer, H. P. (2012). Improved efficiency of doubled haploid generation in hexaploid triticale by in vitro chromosome doubling. BMC Plant Biol. 12:109. doi: 10.1186/1471-2229-1 2-109
33. Xu, X. W., Li, L., Dong, X., Jin, W. W., Melchinger, A. E., and Chen, S. J. (2013). Gametophytic and zygotic selection leads to segregation distortion through in vivo induction of a maternal haploid in maize. J. Exp. Bot. 64, 1083–1096. doi: 10.1093/jxb/ers393
34. Yang, N., Lu, Y. L., Yang, X. H., Huang, J., Zhou, Y., Ali, F., et al. (2014). Genome wide association studies using a new nonparametric model reveal the genetic architecture of 17 agronomic traits in an enlarged maize association panel. PLoS Genet. 10:e1004573. doi: 10.1371/journal.pgen.1004573
35. Yang, X. H., Gao, S. B., Xu, S. T., Zhang, Z. X., Prasanna, B. M., Li, L., et al. (2011). Characterization of a global germplasm collection and its potential utilization for analysis of complex quantitative traits in maize. Mol. Breed. 28, 511–526. doi: 10.1007/s11032-010-9500-7
36. Yang, X. H., Yan, J. B., Shah, T., Warburton, M. L., Li, Q., Li, L., et al. (2010). Genetic analysis and characterization of a new maize association mapping panel for quantitative trait loci dissection. Theoret. Appl. Genet. 121, 417–431. doi: 10.1007/s00122-010-1320-y
37. Yu, J. M., Pressoir, G., Briggs, W. H., Bi, I. V., Yamasaki, M., Doebley, J. F., et al. (2006). A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat. Genet. 38, 203–208. doi: 10.1038/ng1702
38. Zhang, Z. W., Buckler, E. S., Casstevens, T. M., and Bradbury, P. J. (2009). Software engineering the mixed model for genome-wide association studies on large samples. Brief. Bioinformatics 10, 664–675. doi: 10.1093/bib/bbp050