Whole-genome sequences of Listeria monocytogenes sequence type 6 isolates associated with a large foodborne outbreak in South Africa, 2017 to 2018

Genome Announcements

Volumn 6, Issue 25, 2018, Pages

  Allam, Mushal ^a   Tau, Nomsa ^a   Smouse, Shannon L ^a   Mtshali, Phillip S ^a   Mnyameni, Florah ^a   Khumalo, Zamantungwa T H ^a   Ismail, Arshad ^a   Govender, Nevashan ^a   Thomas, Juno ^a   Smith, Anthony M ^a  

^a NATIONAL INSTITUTE FOR COMMUNICABLE DISEASES   (South Africa)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENE; BACTERIUM CONTAMINATION; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; DISEASE SEVERITY; EPIDEMIC; FOOD CONTAMINATION; FOOD INTAKE; FOOD POISONING; GASTROENTERITIS; HUMAN; LABORATORY TEST; LISTERIA MONOCYTOGENES; LISTERIOSIS; MICROBIOLOGICAL EXAMINATION; MULTILOCUS SEQUENCE TYPING; NONHUMAN; PROCESSED MEAT; PSEUDOGENE; SOUTH AFRICA; WHOLE GENOME SEQUENCING;

EID: 85048926961     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00538-18     Document Type: Article

References (3)

1. Ferreira V, Wiedmann M, Teixeira P, Stasiewicz MJ. 2014. Listeria monocytogenes persistence in food-associated environments: epidemiology, strain characteristics, and implications for public health. J Food Prot 77:150-170. https://doi.org/10.4315/0362-028X.JFP-13-150
2. Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 19:455-477. https://doi.org/10.1089/cmb.2012.0021
3. Tatusova T, Dicuccio M, Badretdin A, Chetvernin V, Nawrocki EP, Zaslavsky L, Lomsadze A, Pruitt KD, Borodovsky M, Ostell J. 2016. NCBI Prokaryotic Genome Annotation Pipeline. Nucleic Acids Res 44:6614-6624. https://doi.org/10.1093/nar/gkw569