Erratum to: Pseudopropionibacterium rubrum sp. nov., a novel red-pigmented species isolated from human gingival sulcus : Novel Pseudopropionibacterium (Microbiology and Immunology, (2018), 62, 6, (388-394), 10.1111/1348-0421.12592);Pseudopropionibacterium rubrum sp. nov., a novel red-pigmented species isolated from human gingival sulcus

Microbiology and Immunology

Volumn 62, Issue 6, 2018, Pages 388-394

  Saito, Masanori ^a   Shinozaki Kuwahara, Noriko ^a   Tsudukibashi, Osamu ^a   Hashizume Takizawa, Tomomi ^a   Kobayashi, Ryoki ^a   Kurita Ochiai, Tomoko ^a  

^a NIHON UNIVERSITY   (Japan)

Author keywords

gram positive rod; oral microbiota; Pseudopropionibacterium rubrum

Indexed keywords

ACETIC ACID; GLUCOSE; LACTIC ACID; PROPIONIC ACID; RNA POLYMERASE BETA SUBUNIT; SUCCINIC ACID; BACTERIAL DNA; BACTERIAL PROTEIN; BENZOQUINONE DERIVATIVE; DNA DIRECTED RNA POLYMERASE; FATTY ACID; PROPIONIC ACID DERIVATIVE; QUINONE DERIVATIVE; RNA 16S;

ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CLASSIFICATION; DNA DNA HYBRIDIZATION; FERMENTATION; GENE SEQUENCE; GENOMICS; GINGIVA; HOUSEKEEPING GENE; HUMAN; HUMAN TISSUE; MOUTH TISSUE; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPIC VARIATION; PHYLOGENY; PROPIONIBACTERIUM; PSEUDOPROPIONIBACTERIUM RUBRUM; RNA GENE; SEQUENCE HOMOLOGY; TAXON; UNIVERSITY HOSPITAL; BACTERIAL GENE; BACTERIUM IDENTIFICATION; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; NUCLEIC ACID HYBRIDIZATION; PROPIONIBACTERIACEAE; SPECIES DIFFERENCE;

ACETIC ACID; BACTERIAL PROTEINS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; BENZOQUINONES; DNA, BACTERIAL; DNA-DIRECTED RNA POLYMERASES; FATTY ACIDS; FERMENTATION; GENES, BACTERIAL; GINGIVA; GLUCOSE; HUMANS; LACTIC ACID; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; PROPIONATES; PROPIONIBACTERIACEAE; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; SPECIES SPECIFICITY; SUCCINIC ACID;

EID: 85048782354     PISSN: 03855600     EISSN: 13480421     Source Type: Journal    
DOI: 10.1111/1348-0421.12635     Document Type: Erratum

References (37)

1. Kusano K., Yamada H., Niwa M., Yamasato K. (1997) Propionibacterium cyclohexanicum sp. nov., a new acid-tolerant w-cyclohexyl fatty acid-containing propionibacterium isolated from spoiled orange juice. Int J Syst Bacteriol 47: 825–31.
2. Scholz F.P.C., Kilian M. (2016) The natural history of cutaneous propionibacteria, and reclassification of selected species within the genus Propionibacterium to the proposed novel genera Acidipropionibacterium gen. nov., Cutibacterium gen. nov., and Pseudopropionibacterium gen. nov. Int J Syst Evol Microbiol 66: 4422–32.
3. Socransky S.S., Dzink J.L., Smith C.M. (1985) Chemically defined medium for oral microorganisms. J Clin Microbiol 22: 303–5.
4. Gendron R., Grenier D., Maheu-Robert L.F. (2000) The oral cavity as a reservoir of bacterial pathogens for focal infections. Microb Infect 2: 897–906.
5. Macdonald J.B., Socransky S.S., Gibbsons R.J. (1963) Aspects of the pathogenesis of mixed anaerobic infections of mucous membranes. J Dent Res 42: 529–44.
6. Takazoe I., Nakamura T., Homma T., Yamamoto A., Hashimoto Y. (1971) Growth promoting effect of corynebacterium upon bacteroides. Bull Tokyo Dent Coll 12: 95–7.
7. Sasaki N., Sakai K., Takazoe I. (1980) An improved medium for the selective isolation of Propionibacterium acnes from the human oral cavity and skin. J Dent Res 59: 1515–9.
8. Sasaki N., Soder P.O., Fronstell G., Zambelis G. (1990) Increased numbers of black-pigmented Bacteroides in induced periodontitis in monkeys. Bull Tokyo Dent Coll 31: 1–7.
9. Moore W.E., Holdeman L.V., Smibert R.M, Hash D.E., Burmeister J.E., Ralnney R.R. (1982) Bacteriology of severe periodontitis in young adult humans. Infect Immun 38: 1137–48.
10. Branger C., Bruneau B., Goullet P. (1987) Septicemia caused by Propionibacterium granulosum in a compromised patient. J Clin Microbiol 25: 2405–6.
11. Perez-Chaia A., Nader de Macias M.E., Oliver G. (1995) Propionibacteria in the gut: Effect on some metabolic activities of the host. Lait 75: 435–45.
12. Hugenholtz J., Hunik J., Santos H., Smid E. (2002) Nutraceutical production by propionibacteria. Lait 82: 103–12.
13. Huang Y., Adams M.C. (2003) An in vitro model for investigating intestinal adhesion of potential dairy propionibacteria probiotic strains using cell line C2BBe1. Lett Appl Microbiol 36: 213–6.
14. Siqueira Jr. J.F. (2003) Periapical actinomycosis and infection with Propionibacterium propionicum. Endod Top 6: 78–95.
15. Griffen A.L., Becker M.R., Lyons S.R., Moeschberger M.L., Leys E.J. (1998) Prevalence of Porphyromonas gingivalis and periodontal health status. J Clin Microbiol 36: 3239–42.
16. Doetsch R.N. (1981) Determinative methods of light microscopy. In Gerhardt P., Murray R.G.E., Costilow R.N., Nester E.W., Wood W.A., Krieg N.R., Phillips G.B., eds. Manual of Methods for General Bacteriology. Washington: American Society for Microbiology, pp. 21–33.
17. Schaeffer A.B., Fulton M.D. (1933) A simplified method of staining endospores. Science 77: 194.
18. Lane D.J. (1991) 16S/23S rRNA sequencing. In Stackebrandt E., Goodfellow M., eds. Nucleic Acid Techniques in Bacterial Systematics. Chichester: Wiley, pp. 115–75.
19. Hiraishi A. (1992) Direct automated sequencing of 16S rDNA amplified by polymerase chain reaction from bacterial cultures without DNA purification. Lett Appl Microbiol 15: 210–3.
20. WZBiocloud. Search about Bacteria or Archae. [Cited 14 Aug 2014.] Available from URL: https://www.ezbiocloud.net/
21. Thompson J.D., Higgins D.G., Gibson T.J. (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment though sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 29: 4763–80.
22. Tamura K., Stecher G., Peterson D., Filipski A., Kumar S. (2013) MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30: 2725–9.
23. Kimura M. (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111–20.
24. Saitou N., Nei M. (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406–25.
25. Downes J., Wade W.G. (2009) Propionibacterium acidifaciens sp. nov., isolated from the human mouth. Int J Syst Evol Microbiol 59: 2778–81.
26. DDBJ Services. DDBJ Center. [Cited 23 Oct 2014.] Available from URL: http://www.ddbj.nig.ac.jp/
27. Saito M., Kuwahara-Shinozaki N., Hirasawa M., Takada K. (2015) Streptococcus oricebi sp. nov. isolated from the oral cavity of tufted capuchin. Int J Syst Evol Microbiol 66: 1063–7.
28. Ezaki T., Hashimoto Y., Yabuuchi E. (1989) Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 29: 92–101.
29. Saito M., Kuwahara-Shinozaki N., Takada K. (2012) Gibbsiella dentisursi sp. nov. isolated from the bear oral cavity. Microbiol Immunol 56: 506–12.
30. Sasser M. (1990) Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids. Delaware: MIDI.
31. Nishijima M., Araki-Sakai M., Sano H. (1997) Identification of isoprenoid quinones by frit-FAB liquid chromatography-mass spectrometry for the chemotaxonomy of microorganisms. J Microbiol Meth 28: 113–22.
32. Jones B.E., Grant W.D., Collins N.C., Mwatha W. (1994) Alkaliphiles: Diversity and identification. In Priest F.G., Ramos-Cormenzana A., Tindall B.J., eds. Bacterial Diversity and Systematics. New York: Plenum Press, pp. 195–230.
33. Sugawara Y., Ueki A., Abe K., Kaku N., Watanabe K., Ueki K. (2011) Propioniciclava tarda gen. nov., sp. nov., isolated from a methanogenic reactor treating waste from cattle farms. Int J Syst Evol Microbiol 61: 2298–303.
34. Stackebrandt E., Ebers J. (2006) Taxonomic parameters revisited: Tarnished gold standards. Microbiol Today 33: 152–5.
35. Yarza P., Richter M., Peplies J., Euzeby J., Amann R., Schleifer K.H., Ludwig W., Glöckner F.O., Rosselló-Móra R. (2008) The all-species living tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains. Syst Appl Microbiol 31: 241–50.
36. Vorobjeva L.I. (1999) The genus Propionibacterium. In: Propionibacteria. The Netherlands: Springer, pp. 4–46.
37. Wayne L.G., Brenner D.J., Colwell R.R., Grimont P.A.D., Kandler O., Krichevsky M.I., Moore L.H., Moore W.E.C., Murray R.G.E., Stackebrandt E., Starr M.P., Trüper H.G. (1987) International committee on systematic bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37: 463–4.