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Volumn 49, Issue 8, 2018, Pages 2704-2713

Detection of viruses in abalone tissue using metagenomics technology

Author keywords

AbHV; AbSV; Haliotis diversicolor; high throughput sequencing; viral metagenome; WSSV

Indexed keywords

DATA SET; DATABASE; DETECTION METHOD; ENZYME; ENZYME ACTIVITY; GASTROPOD; GENOME; GENOMICS; MAPPING METHOD; NUCLEIC ACID; VIRAL DISEASE; VIRUS;

EID: 85047802564     PISSN: 1355557X     EISSN: 13652109     Source Type: Journal    
DOI: 10.1111/are.13731     Document Type: Article
Times cited : (18)

References (32)
  • 2
    • 0035875343 scopus 로고    scopus 로고
    • GeneMarkS: A self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions
    • Besemer, J., Lomsadze, A., & Borodovsky, M. (2001). GeneMarkS: A self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions. Nucleic Acids Research, 29(12), 2607–2618. https://doi.org/10.1093/nar/29.12.2607
    • (2001) Nucleic Acids Research , vol.29 , Issue.12 , pp. 2607-2618
    • Besemer, J.1    Lomsadze, A.2    Borodovsky, M.3
  • 3
    • 22044439259 scopus 로고    scopus 로고
    • Herpes-like virus infection causing mortality of cultured abalone Haliotis diversicolor supertexta in Taiwan
    • Chang, P. H., Kuo, S. T., Lai, S. H., Yang, H. S., Ting, Y. Y., Hsu, C. L., & Chen, H. C. (2005). Herpes-like virus infection causing mortality of cultured abalone Haliotis diversicolor supertexta in Taiwan. Diseases of Aquatic Organisms, 65(1), 23–27. https://doi.org/10.3354/dao065023
    • (2005) Diseases of Aquatic Organisms , vol.65 , Issue.1 , pp. 23-27
    • Chang, P.H.1    Kuo, S.T.2    Lai, S.H.3    Yang, H.S.4    Ting, Y.Y.5    Hsu, C.L.6    Chen, H.C.7
  • 4
    • 65849451040 scopus 로고    scopus 로고
    • Analysis of correlation of local GC level in human protein coding genes
    • Chen, X. G., Hu, J., & Yang, X. (2008). Analysis of correlation of local GC level in human protein coding genes. Hereditary, 30(9), 1169–1174. https://doi.org/10.3724/SP.J.1005.2008.01169
    • (2008) Hereditary , vol.30 , Issue.9 , pp. 1169-1174
    • Chen, X.G.1    Hu, J.2    Yang, X.3
  • 5
    • 85049496530 scopus 로고    scopus 로고
    • The pathogeny and epidemiology of fulminating epidemic disease of abalone in Fujian and Guangdong
    • Chen, Y. Z., Huang, W. H., & Chen, M. (2005). The pathogeny and epidemiology of fulminating epidemic disease of abalone in Fujian and Guangdong. Marine Sciences, 29(8), 100–104.
    • (2005) Marine Sciences , vol.29 , Issue.8 , pp. 100-104
    • Chen, Y.Z.1    Huang, W.H.2    Chen, M.3
  • 6
    • 84969168156 scopus 로고    scopus 로고
    • Australian abalone (Haliotis laevigata, H. rubra and H. conicopora) are susceptible to infection by multiple abalone herpesvirus genotypes
    • Corbeil, S., Williams, L. M., McColl, K. A., & Crane, M. S. J. (2016). Australian abalone (Haliotis laevigata, H. rubra and H. conicopora) are susceptible to infection by multiple abalone herpesvirus genotypes. Diseases of Aquatic Organisms, 119(2), 101–106. https://doi.org/10.3354/dao02989
    • (2016) Diseases of Aquatic Organisms , vol.119 , Issue.2 , pp. 101-106
    • Corbeil, S.1    Williams, L.M.2    McColl, K.A.3    Crane, M.S.J.4
  • 7
    • 84861397655 scopus 로고    scopus 로고
    • Metagenomic analysis of viruses from the bat fecal samples reveals many novel viruses in insectivorous bats in China
    • Ge, X., Li, Y., Yang, X., Zhang, H., Zhou, P., Zhang, Y., & Shi, Z. (2012). Metagenomic analysis of viruses from the bat fecal samples reveals many novel viruses in insectivorous bats in China. Journal of Virology, JVI, 06671–06611, https://doi.org/10.1128/JVI.06671-11
    • (2012) Journal of Virology, JVI , pp. 6611-6671
    • Ge, X.1    Li, Y.2    Yang, X.3    Zhang, H.4    Zhou, P.5    Zhang, Y.6    Shi, Z.7
  • 8
    • 79960264362 scopus 로고    scopus 로고
    • Trinity: Reconstructing a full-length transcriptome without a genome from RNA-Seq data
    • Grabherr, M. G., Haas, B. J., Yassour, M., Levin, J. Z., Thompson, D. A., Amit, I., … Zeng, Q. (2011). Trinity: Reconstructing a full-length transcriptome without a genome from RNA-Seq data. Nature Biotechnology, 29(7), 644. https://doi.org/10.1038/nbt.1883
    • (2011) Nature Biotechnology , vol.29 , Issue.7 , pp. 644
    • Grabherr, M.G.1    Haas, B.J.2    Yassour, M.3    Levin, J.Z.4    Thompson, D.A.5    Amit, I.6    Zeng, Q.7
  • 9
    • 34247327751 scopus 로고    scopus 로고
    • Ganglioneuritis causing high mortalities in farmed Australian abalone (Haliotis laevigata and Haliotis rubra)
    • Hooper, C., Hardy-Smith, P., & Handlinger, J. (2007). Ganglioneuritis causing high mortalities in farmed Australian abalone (Haliotis laevigata and Haliotis rubra). Australian Veterinary Journal, 85(5), 188–193. https://doi.org/10.1111/j.1751-0813.2007.00155.x
    • (2007) Australian Veterinary Journal , vol.85 , Issue.5 , pp. 188-193
    • Hooper, C.1    Hardy-Smith, P.2    Handlinger, J.3
  • 10
    • 85009986889 scopus 로고    scopus 로고
    • Tissue-based next generation sequencing: Application in a universal healthcare system
    • Hynes, S. O., Pang, B., James, J. A., Maxwell, P., & Salto-Tellez, M. (2017). Tissue-based next generation sequencing: Application in a universal healthcare system. British Journal of Cancer, 116(5), 553. https://doi.org/10.1038/bjc.2016.452
    • (2017) British Journal of Cancer , vol.116 , Issue.5 , pp. 553
    • Hynes, S.O.1    Pang, B.2    James, J.A.3    Maxwell, P.4    Salto-Tellez, M.5
  • 14
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead, B., & Salzberg, S. L. (2012). Fast gapped-read alignment with Bowtie 2. Nature Methods, 9(4), 357–359. https://doi.org/10.1038/nmeth.1923
    • (2012) Nature Methods , vol.9 , Issue.4 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 15
    • 0242475336 scopus 로고    scopus 로고
    • Whloe genome amplification: Abundant supplies of DNA from precious samples or clinical specimens
    • Lasken, R. S., & Egholm, M. (2003). Whloe genome amplification: Abundant supplies of DNA from precious samples or clinical specimens. Trends in Biotechnology, 21, 531–535. https://doi.org/10.1016/j.tibtech.2003.09.010
    • (2003) Trends in Biotechnology , vol.21 , pp. 531-535
    • Lasken, R.S.1    Egholm, M.2
  • 16
    • 34247489656 scopus 로고    scopus 로고
    • Mechanism of chimera formation during the multiple displacement amplification reaction
    • Lasken, R. S., & Stockwell, T. B. (2007). Mechanism of chimera formation during the multiple displacement amplification reaction. BMC Biotechnology, 7(1), 19. https://doi.org/10.1186/1472-6750-7-19
    • (2007) BMC Biotechnology , vol.7 , Issue.1 , pp. 19
    • Lasken, R.S.1    Stockwell, T.B.2
  • 17
    • 84896739948 scopus 로고    scopus 로고
    • Single cell genomics: Advances and future perspectives
    • Macaulay, I. C., & Voet, T. (2014). Single cell genomics: Advances and future perspectives. PLoS Genetics, 10(1), e1004126. https://doi.org/10.1371/journal.pgen.1004126
    • (2014) PLoS Genetics , vol.10 , Issue.1
    • Macaulay, I.C.1    Voet, T.2
  • 18
    • 84866765200 scopus 로고    scopus 로고
    • Multiple displacement amplification and its application in preimplantation genetic diagnosis
    • Peng, Z. F., & Sun, Y. P. (2010). Multiple displacement amplification and its application in preimplantation genetic diagnosis. International Journal of Reproductive Health/Family Planning, 29(3), 235–239.
    • (2010) International Journal of Reproductive Health/Family Planning , vol.29 , Issue.3 , pp. 235-239
    • Peng, Z.F.1    Sun, Y.P.2
  • 19
    • 0037460985 scopus 로고    scopus 로고
    • TIGR gene indices clustering tools (TGICL): A software system for fast clustering of large EST datasets
    • Pertea, G., Huang, X., Liang, F., Antonescu, V., Sultana, R., Karamycheva, S., … Parvizi, B. (2003). TIGR gene indices clustering tools (TGICL): A software system for fast clustering of large EST datasets. Bioinformatics, 19(5), 651–652. https://doi.org/10.1093/bioinformatics/btg034
    • (2003) Bioinformatics , vol.19 , Issue.5 , pp. 651-652
    • Pertea, G.1    Huang, X.2    Liang, F.3    Antonescu, V.4    Sultana, R.5    Karamycheva, S.6    Parvizi, B.7
  • 20
    • 77954627922 scopus 로고    scopus 로고
    • Viruses in the faecal microbiota of monozygotic twins and their mothers
    • Reyes, A., Haynes, M., Hanson, N., Angly, F. E., Heath, A. C., Rohwer, F., & Gordon, J. I. (2010). Viruses in the faecal microbiota of monozygotic twins and their mothers. Nature, 466(7304), 334–338. https://doi.org/10.1038/nature09199
    • (2010) Nature , vol.466 , Issue.7304 , pp. 334-338
    • Reyes, A.1    Haynes, M.2    Hanson, N.3    Angly, F.E.4    Heath, A.C.5    Rohwer, F.6    Gordon, J.I.7
  • 21
    • 84989812720 scopus 로고    scopus 로고
    • Ecogenomics and biogeochemical impacts of uncultivated globally abundant ocean viruses
    • Roux, S., Brum, J. R., Dutilh, B. E., Sunagawa, S., Duhaime, M. B., Loy, A., … Sullivan, M. B. (2016). Ecogenomics and biogeochemical impacts of uncultivated globally abundant ocean viruses. Nature, 537(7622), 689–693. https://doi.org/10.1038/nature09199
    • (2016) Nature , vol.537 , Issue.7622 , pp. 689-693
    • Roux, S.1    Brum, J.R.2    Dutilh, B.E.3    Sunagawa, S.4    Duhaime, M.B.5    Loy, A.6    Sullivan, M.B.7
  • 22
    • 41349088396 scopus 로고    scopus 로고
    • A sphereovirus resulted in mass mortality of Haliotis diversicolor aquatilis
    • Song, Z. R., Ji, R. X., Yan, S. F., Chen, C. S., Zhong, Y. P., Jiang, Y. H., & Ni, Z. M. (2000). A sphereovirus resulted in mass mortality of Haliotis diversicolor aquatilis. Journal of Fisheries of China, 24(5), 463–466. https://doi.org/10.3321/j.issn:1000-0615.2000.05.015
    • (2000) Journal of Fisheries of China , vol.24 , Issue.5 , pp. 463-466
    • Song, Z.R.1    Ji, R.X.2    Yan, S.F.3    Chen, C.S.4    Zhong, Y.P.5    Jiang, Y.H.6    Ni, Z.M.7
  • 23
    • 80051940289 scopus 로고    scopus 로고
    • Research progress on germplasm resources in Haliotis diversicolor diversicolor and H. diversicolor aquatilis. South China
    • Su, T. F. (2006). Research progress on germplasm resources in Haliotis diversicolor diversicolor and H. diversicolor aquatilis. South China. Fisheries Science, 2(2), 64–67. https://doi.org/10.3969/j.issn.2095-0780.2006.02.012
    • (2006) Fisheries Science , vol.2 , Issue.2 , pp. 64-67
    • Su, T.F.1
  • 25
    • 79957532985 scopus 로고    scopus 로고
    • Single-cell whole-genome amplification technique impacts the accuracy of SNP microarray-based genotyping and copy number analyses
    • Treff, N. R., Su, J., Tao, X., Northrop, L. E., & Scott Jr, R. T. (2010). Single-cell whole-genome amplification technique impacts the accuracy of SNP microarray-based genotyping and copy number analyses. Molecular Human Reproduction., 17(6), 335–343. https://doi.org/10.1093/molehr/gaq103
    • (2010) Molecular Human Reproduction. , vol.17 , Issue.6 , pp. 335-343
    • Treff, N.R.1    Su, J.2    Tao, X.3    Northrop, L.E.4    Scott, R.T.5
  • 26
    • 84880213158 scopus 로고    scopus 로고
    • Single-cell paired-end genome sequencing reveals structural variation per cell cycle
    • Voet, T., Kumar, P., Van Loo, P., Cooke, S. L., Marshall, J., Lin, M. L., … McBride, D. J. (2013). Single-cell paired-end genome sequencing reveals structural variation per cell cycle. Nucleic Acids Research, 41(12), 6119–6138. https://doi.org/10.1093/nar/gkt345
    • (2013) Nucleic Acids Research , vol.41 , Issue.12 , pp. 6119-6138
    • Voet, T.1    Kumar, P.2    Van Loo, P.3    Cooke, S.L.4    Marshall, J.5    Lin, M.L.6    McBride, D.J.7
  • 27
    • 80051919828 scopus 로고    scopus 로고
    • Isolation, identification and phylogenetic analysis of pathogen from Haliotis diversicolor Reeve with withering syndrome
    • Wang, J. Y., Sun, X. X., Wang, R. X., & Su, Y. L. (2010). Isolation, identification and phylogenetic analysis of pathogen from Haliotis diversicolor Reeve with withering syndrome. South China Fisheries Science, 6(5), 21–26. https://doi.org/10.3969/j.issn.1673-2227.2010.05.004
    • (2010) South China Fisheries Science , vol.6 , Issue.5 , pp. 21-26
    • Wang, J.Y.1    Sun, X.X.2    Wang, R.X.3    Su, Y.L.4
  • 28
    • 0033555341 scopus 로고    scopus 로고
    • Per os challenge of Litopenaeus vannamei postlarvae and Farfantepenaeus duorarum juveniles with six geographic isolates of white spot syndrome virus
    • Wang, Q., White, B. L., Redman, R. M., & Lightner, D. V. (1999). Per os challenge of Litopenaeus vannamei postlarvae and Farfantepenaeus duorarum juveniles with six geographic isolates of white spot syndrome virus. Aquaculture, 170(3), 179–194. https://doi.org/10.1016/S0044-8486(98)00425-6
    • (1999) Aquaculture , vol.170 , Issue.3 , pp. 179-194
    • Wang, Q.1    White, B.L.2    Redman, R.M.3    Lightner, D.V.4
  • 29
    • 85035771085 scopus 로고    scopus 로고
    • Comparison of methods for library construction and short read annotation of shellfish viral metagenomes
    • Wei, H. Y., Huang, S., Wang, J. Y., Gao, F., & Jiang, J. Z. (2017). Comparison of methods for library construction and short read annotation of shellfish viral metagenomes. Genes & Genomics, 40(3), 281–288. https://doi.org/10.1007/s13258-017-0629-1
    • (2017) Genes & Genomics , vol.40 , Issue.3 , pp. 281-288
    • Wei, H.Y.1    Huang, S.2    Wang, J.Y.3    Gao, F.4    Jiang, J.Z.5
  • 31
    • 39149127986 scopus 로고    scopus 로고
    • Pathogeny and histopathology of the epidemic disease in Haliotis diversicolor supertexta
    • Zhang, Z. X., Wang, J., Su, Y. Q., Yan, Q. P., Chi, X. C., Zhou, H. M., & Zhou, Y. C. (2001). Pathogeny and histopathology of the epidemic disease in Haliotis diversicolor supertexta. Journal of Xiamen University (Natural Science), 40(4), 949–956. DOI:-https://doi.org/10.3321/j.issn:0438-0479.2001.04.022
    • (2001) Journal of Xiamen University (Natural Science) , vol.40 , Issue.4 , pp. 949-956
    • Zhang, Z.X.1    Wang, J.2    Su, Y.Q.3    Yan, Q.P.4    Chi, X.C.5    Zhou, H.M.6    Zhou, Y.C.7
  • 32
    • 78249289417 scopus 로고    scopus 로고
    • A bacteriophage-related chimeric marine virus infecting abalone
    • Zhuang, J., Cai, G., Lin, Q., Wu, Z., & Xie, L. (2010). A bacteriophage-related chimeric marine virus infecting abalone. PLoS ONE, 5(11), e13850. https://doi.org/10.1371/journal.pone.0013850
    • (2010) PLoS ONE , vol.5 , Issue.11
    • Zhuang, J.1    Cai, G.2    Lin, Q.3    Wu, Z.4    Xie, L.5


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