-
1
-
-
0036804729
-
Effects of models of rate evolution on estimation of divergence dates with special reference to the metazoan 18s ribosomal RNA phylogeny
-
Aris-Brosou, S., Yang, Z., Huelsenbeck, J. (2002) 'Effects of Models of Rate Evolution on Estimation of Divergence Dates With Special Reference to the Metazoan 18s Ribosomal RNA Phylogeny, Systematic Biology, 51: 703.
-
(2002)
Systematic Biology
, vol.51
, pp. 703
-
-
Aris-Brosou, S.1
Yang, Z.2
Huelsenbeck, J.3
-
2
-
-
37849053471
-
Estimating divergence times in large phylogenetic trees
-
Britton, T., Anderson, C. L., Jacquet, D., et al. (2007) 'Estimating Divergence Times in Large Phylogenetic Trees', Systematic Biology, 56: 741.
-
(2007)
Systematic Biology
, vol.56
, pp. 741
-
-
Britton, T.1
Anderson, C.L.2
Jacquet, D.3
-
3
-
-
33344465800
-
Relaxed phylogenetics and dating with confidence
-
Drummond, A. J., Ho, S. Y. W., Phillips, M. J., et al. (2006) 'Relaxed Phylogenetics and Dating With Confidence', PLOS Biology, 4: E88.
-
(2006)
PLOS Biology
, vol.4
, pp. E88
-
-
Drummond, A.J.1
Ho, S.Y.W.2
Phillips, M.J.3
-
4
-
-
84864530626
-
Bayesian phylogenetics with BEAUti and the BEAST 1. 7
-
-., Suchard, M. A., Xie, D., et al. (2012) 'Bayesian phylogenetics with BEAUti and the BEAST 1. 7', Molecular Biology and Evolution, 29: 1969.
-
(2012)
Molecular Biology and Evolution
, vol.29
, pp. 1969
-
-
Drummond, A.J.1
Ho, S.Y.W.2
Phillips, M.J.3
Suchard, M.A.4
Xie, D.5
-
5
-
-
85017439030
-
Virus genomes reveal factors that spread and sustained the ebola epidemic
-
Dudas, G., Carvalho, L. M., Bedford, T., et al. (2017) 'Virus Genomes Reveal Factors That Spread and Sustained the Ebola Epidemic' Nature, 544: 309.
-
(2017)
Nature
, vol.544
, pp. 309
-
-
Dudas, G.1
Carvalho, L.M.2
Bedford, T.3
-
7
-
-
84937955824
-
Real-Time digital pathogen surveillance-the time is now
-
Gardy, J., Loman, N. J., Rambaut, A. (2015) 'Real-Time Digital Pathogen Surveillance-The Time is Now', Genome Biology, 16: 155.
-
(2015)
Genome Biology
, vol.16
, pp. 155
-
-
Gardy, J.1
Loman, N.J.2
Rambaut, A.3
-
8
-
-
38249007654
-
Estimation of branching dates among primates by molecular clocks of nuclear DNA which slowed down in Hominoidea
-
Hasegawa, M., Kishino, H., Yano, T-a. (1989) 'Estimation of branching dates among primates by molecular clocks of nuclear DNA which slowed down in Hominoidea', Journal of Human Evolution, 18: 461.
-
(1989)
Journal of Human Evolution
, vol.18
, pp. 461
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.-A.3
-
9
-
-
23744500479
-
-
accessed 12 January 2017
-
Jones, E., Oliphant, T., Peterson, P., et al. 2001-2017, 'SciPy: Open Source Scientific Tools for Python', http://www. scipy. org/accessed 12 January 2017.
-
(2001)
SciPy: Open Source Scientific Tools for Python
-
-
Jones, E.1
Oliphant, T.2
Peterson, P.3
-
11
-
-
84964866484
-
Advances in time estimation methods for molecular data
-
Kumar, S., Hedges, S. B. (2016) 'Advances in Time Estimation Methods for Molecular Data', Molecular Biology and Evolution, 33: 863.
-
(2016)
Molecular Biology and Evolution
, vol.33
, pp. 863
-
-
Kumar, S.1
Hedges, S.B.2
-
12
-
-
0016155942
-
An examination of the constancy of the rate of molecular evolution
-
Langley, C. H., Fitch, W. M. (1974) 'An examination of the constancy of the rate of molecular evolution', Journal of Molecular Evolution, 3: 161.
-
(1974)
Journal of Molecular Evolution
, vol.3
, pp. 161
-
-
Langley, C.H.1
Fitch, W.M.2
-
13
-
-
84855197746
-
-
Oxford University Press
-
Mézard, M., Montanari A., (2009), Information, physics, computation. Oxford University Press.
-
(2009)
Information, Physics, Computation
-
-
Mézard, M.1
Montanari, A.2
-
14
-
-
84884652658
-
Genetic draft, selective interference, population genetics of rapid adaptation
-
Neher, R. A. (2013) 'Genetic Draft, Selective Interference, Population Genetics of Rapid Adaptation', Annual Review of Ecology, Evolution, Systematics, 44: 195.
-
(2013)
Annual Review of Ecology, Evolution, Systematics
, vol.44
, pp. 195
-
-
Neher, R.A.1
-
15
-
-
84947577724
-
Nextflu: Real-Time tracking of seasonal influenza virus evolution in humans
-
-., Bedford, T. (2015) 'Nextflu: Real-Time Tracking of Seasonal Influenza Virus Evolution in Humans', Bioinformatics (Oxford, England), 31: 3546.
-
(2015)
Bioinformatics (Oxford, England)
, vol.31
, pp. 3546
-
-
Neher, R.A.1
Bedford, T.2
-
16
-
-
0030790185
-
Structured coalescent processes on different time scales
-
Nordborg, M. (1997) 'Structured coalescent processes on different time scales', Genetics, 146: 1501-14.
-
(1997)
Genetics
, vol.146
, pp. 1501-1514
-
-
Nordborg, M.1
-
18
-
-
77949718257
-
FastTree 2-Approximately Maximum-Likelihood trees for large alignments
-
Price, M. N., Dehal, P. S., Arkin, A. P. (2010) 'FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments', PLoS One, 5: E9490.
-
(2010)
PLoS One
, vol.5
, pp. E9490
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
19
-
-
0034117082
-
A fast algorithm for joint reconstruction of ancestral amino acid sequences
-
Pupko, T., Pe, I., Shamir, R., et al. (2000) 'A Fast Algorithm for Joint Reconstruction of Ancestral Amino Acid Sequences', Molecular Biology and Evolution, 17: 890.
-
(2000)
Molecular Biology and Evolution
, vol.17
, pp. 890
-
-
Pupko, T.1
Pe, I.2
Shamir, R.3
-
20
-
-
0034044313
-
Estimating the rate of molecular evolution: Incorporating non-contemporaneous sequences into maximum likelihood phylogenies
-
Rambaut, A. (2000) 'Estimating the Rate of Molecular Evolution: Incorporating Non-Contemporaneous Sequences Into Maximum Likelihood Phylogenies', Bioinformatics, 16: 395.
-
(2000)
Bioinformatics
, vol.16
, pp. 395
-
-
Rambaut, A.1
-
21
-
-
85084326730
-
Exploring the temporal structure of heterochronous sequences using tempest (Formerly Path-O-Gen)
-
-., Lam, T. T., Carvalho, L. M., et al (2016) 'Exploring the Temporal Structure of Heterochronous Sequences Using TempEst (Formerly Path-O-Gen', Virus Evolution, 2: Vew007.
-
(2016)
Virus Evolution
, vol.2
, pp. Vew007
-
-
Rambaut, A.1
Lam, T.T.2
Carvalho, L.M.3
-
22
-
-
0037314098
-
R8s: Inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock
-
Sanderson, M. J. (2003) 'r8s: Inferring Absolute Rates of Molecular Evolution and Divergence Times in the Absence of a Molecular Clock', Bioinformatics, 19: 301.
-
(2003)
Bioinformatics
, vol.19
, pp. 301
-
-
Sanderson, M.J.1
-
23
-
-
84899553363
-
RAxML Version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies
-
Stamatakis, A. (2014) 'RAxML Version 8: A Tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies, ' Bioinformatics, 30: 1312.
-
(2014)
Bioinformatics
, vol.30
, pp. 1312
-
-
Stamatakis, A.1
-
24
-
-
0035211479
-
Exploring the demographic history of DNA sequences using the generalized skyline plot
-
Strimmer, K., Pybus, O. G. (2001) 'Exploring the Demographic History of DNA Sequences Using the Generalized Skyline Plot', Molecular Biology and Evolution, 18: 2298.
-
(2001)
Molecular Biology and Evolution
, vol.18
, pp. 2298
-
-
Strimmer, K.1
Pybus, O.G.2
-
25
-
-
84869752137
-
Estimating divergence times in large molecular phylogenies
-
Tamura, K., Battistuzzi, F. U., Billing-Ross, P., et al (2012) 'Estimating Divergence Times in Large Molecular Phylogenies', Proceedings of the National Academy of Sciences of the United States of America, 109: 19333.
-
(2012)
Proceedings of the National Academy of Sciences of the United States of America
, vol.109
, pp. 19333
-
-
Tamura, K.1
Battistuzzi, F.U.2
Billing-Ross, P.3
-
26
-
-
0031741182
-
Estimating the rate of evolution of the rate of molecular evolution
-
Thorne, J. L., Kishino, H., Painter, I. S. (1998) 'Estimating the Rate of Evolution of the Rate of Molecular Evolution', Molecular Biology and Evolution, 15: 1647.
-
(1998)
Molecular Biology and Evolution
, vol.15
, pp. 1647
-
-
Thorne, J.L.1
Kishino, H.2
Painter, I.S.3
-
27
-
-
84960356372
-
Fast dating using Least-Squares criteria and algorithms
-
To, T.-H., Jung, M., Lycett, S., et al. (2016) 'Fast Dating Using Least-Squares Criteria and Algorithms', Systematic Biology, 65: 82.
-
(2016)
Systematic Biology
, vol.65
, pp. 82
-
-
To, T.-H.1
Jung, M.2
Lycett, S.3
-
28
-
-
85047144672
-
Scalable relaxed clock phylogenetic dating
-
Volz, E. M., Frost, S. D. W. (2017) 'Scalable Relaxed Clock Phylogenetic Dating', Virus Evolution, 3: 1-9.
-
(2017)
Virus Evolution
, vol.3
, pp. 1-9
-
-
Volz, E.M.1
Frost, S.D.W.2
-
29
-
-
84875974375
-
Viral phylodynamics
-
-., Koelle, K., Bedford, T. (2013) 'Viral Phylodynamics' PLOS Computational Biology, 9: E1002947.
-
(2013)
PLOS Computational Biology
, vol.9
, pp. E1002947
-
-
Volz, E.M.1
Frost, S.D.W.2
Koelle, K.3
Bedford, T.4
-
30
-
-
79952595565
-
The NumPy array: A structure for efficient numerical computation
-
van der Walt, S., Colbert, S., Varoquaux, G. (2011). 'The NumPy array: A structure for efficient numerical computation', Computing in Science & Engineering, 13: 22-30.
-
(2011)
Computing in Science & Engineering
, vol.13
, pp. 22-30
-
-
Vander Walt, S.1
Colbert, S.2
Varoquaux, G.3
-
32
-
-
0033933640
-
Estimation of primate speciation dates using local molecular clocks
-
Yoder, A. D., Yang, Z. (2000) 'Estimation of Primate Speciation Dates Using Local Molecular Clocks', Molecular Biology and Evolution, 17: 1081.
-
(2000)
Molecular Biology and Evolution
, vol.17
, pp. 1081
-
-
Yoder, A.D.1
Yang, Z.2
-
33
-
-
84870840869
-
FFPopSim: An efficient forward simulation package for the evolution of large populations
-
Zanini, F., Neher, R. A. (2012) 'FFPopSim: An Efficient Forward Simulation Package for the Evolution of Large Populations', Bioinformatics, 28: 3332.
-
(2012)
Bioinformatics
, vol.28
, pp. 3332
-
-
Zanini, F.1
Neher, R.A.2
-
34
-
-
0001895697
-
Evolutionary divergence and convergence in proteins
-
Zuckerkandl, E., Pauling, L. (1965) 'Evolutionary divergence and convergence in proteins', Evolving genes and proteins, 97: 97-166
-
(1965)
Evolving Genes and Proteins
, vol.97
, pp. 97-166
-
-
Zuckerkandl, E.1
Pauling, L.2
|