-
1
-
-
84945245592
-
The effect of oil spills on the bacterial diversity and catabolic function in coastal sediments: a case study on the Prestige oil spill
-
Acosta-González, A., Martirani-von Abercron, S.M., Rosselló-Móra, R., Wittich, R.M., Marqués, S., The effect of oil spills on the bacterial diversity and catabolic function in coastal sediments: a case study on the Prestige oil spill. Environ. Sci. Pollut. Res. Int. 22 (2015), 15200–15214.
-
(2015)
Environ. Sci. Pollut. Res. Int.
, vol.22
, pp. 15200-15214
-
-
Acosta-González, A.1
Martirani-von Abercron, S.M.2
Rosselló-Móra, R.3
Wittich, R.M.4
Marqués, S.5
-
2
-
-
66249134249
-
Bacterial communities from shoreline environments (Costa da Morte, northwestern Spain) affected by the Prestige oil spill
-
Alonso-Gutiérrez, J., Figueras, A., Albaigés, J., Jiménez, N., Viñas, M., Solanas, A.M., Novoa, B., Bacterial communities from shoreline environments (Costa da Morte, northwestern Spain) affected by the Prestige oil spill. Appl. Environ. Microbiol. 75 (2009), 3407–3418.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 3407-3418
-
-
Alonso-Gutiérrez, J.1
Figueras, A.2
Albaigés, J.3
Jiménez, N.4
Viñas, M.5
Solanas, A.M.6
Novoa, B.7
-
3
-
-
84921990927
-
Pseudomonas salegens sp. nov., a halophilic member of the genus Pseudomonas isolated from a wetland
-
Amoozegar, M.A., Shahinpei, A., Sepahy, A.A., Makhdoumi-Kakhki, A., Seyedmahdi, S.S., Schumann, P., Ventosa, A., Pseudomonas salegens sp. nov., a halophilic member of the genus Pseudomonas isolated from a wetland. Int. J. Syst. Evol. Microbiol. 64 (2014), 3565–3570.
-
(2014)
Int. J. Syst. Evol. Microbiol.
, vol.64
, pp. 3565-3570
-
-
Amoozegar, M.A.1
Shahinpei, A.2
Sepahy, A.A.3
Makhdoumi-Kakhki, A.4
Seyedmahdi, S.S.5
Schumann, P.6
Ventosa, A.7
-
4
-
-
84962081633
-
Pseudomonas populi sp. nov., an endophytic bacterium isolated from Populus euphratica
-
Anwar, N., Abaydulla, G., Zayadan, B., Abdurahman, M., Hamood, B., Erkin, R., Ismayil, N., Rozahon, M., Mamtimin, H., Rahman, E., Pseudomonas populi sp. nov., an endophytic bacterium isolated from Populus euphratica. Int. J. Syst. Evol. Microbiol. 66 (2016), 1419–1425.
-
(2016)
Int. J. Syst. Evol. Microbiol.
, vol.66
, pp. 1419-1425
-
-
Anwar, N.1
Abaydulla, G.2
Zayadan, B.3
Abdurahman, M.4
Hamood, B.5
Erkin, R.6
Ismayil, N.7
Rozahon, M.8
Mamtimin, H.9
Rahman, E.10
-
5
-
-
0000056431
-
The hydrogen-oxidizing bacteria
-
M.P. Starr H. Stolp H.G. Trüper A. Balows H.G. Schlegel Springer-Verlag Berlin
-
Aragno, M., Schlegel, H.G., The hydrogen-oxidizing bacteria. Starr, M.P., Stolp, H., Trüper, H.G., Balows, A., Schlegel, H.G., (eds.) The Prokaryotes. A Handbook on Habitats, Isolation and Identification of Bacteria, 1981, Springer-Verlag, Berlin, 865–893.
-
(1981)
The Prokaryotes. A Handbook on Habitats, Isolation and Identification of Bacteria
, pp. 865-893
-
-
Aragno, M.1
Schlegel, H.G.2
-
6
-
-
85010899696
-
‘Pseudomonas saudimassiliensis’ sp. nov. a new bacterial species isolated from air samples in the urban environment of Makkah, Saudi Arabia
-
Azhar, E.I., Papadioti, A., Bibi, F., Ashshi, A.M., Raoult, D., Angelakis, E., ‘Pseudomonas saudimassiliensis’ sp. nov. a new bacterial species isolated from air samples in the urban environment of Makkah, Saudi Arabia. New Microbes New Infect. 16 (2017), 43–44.
-
(2017)
New Microbes New Infect.
, vol.16
, pp. 43-44
-
-
Azhar, E.I.1
Papadioti, A.2
Bibi, F.3
Ashshi, A.M.4
Raoult, D.5
Angelakis, E.6
-
7
-
-
84903160552
-
PlasmidFinder and pMLST: in silico detection and typing of plasmids
-
Carattoli, A., Zankari, E., Garcia-Fernandez, A., Voldby Larsen, M., Lund, O., Villa, L., Aarestrup, F.M., Hasman, H., PlasmidFinder and pMLST: in silico detection and typing of plasmids. Antimicrob. Agents Chemother. 58 (2014), 3895–3903.
-
(2014)
Antimicrob. Agents Chemother.
, vol.58
, pp. 3895-3903
-
-
Carattoli, A.1
Zankari, E.2
Garcia-Fernandez, A.3
Voldby Larsen, M.4
Lund, O.5
Villa, L.6
Aarestrup, F.M.7
Hasman, H.8
-
8
-
-
0040460179
-
List of bacterial names with standing in nomenclature: a folder available on the internet
-
Euzéby, J.P., List of bacterial names with standing in nomenclature: a folder available on the internet. Int. J. Syst. Bacteriol. 47 (1997), 590–592.
-
(1997)
Int. J. Syst. Bacteriol.
, vol.47
, pp. 590-592
-
-
Euzéby, J.P.1
-
9
-
-
0019797407
-
Evolutionary trees from DNA sequences: a maximum likelihood approach
-
Felsenstein, J., Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17 (1981), 368–376.
-
(1981)
J. Mol. Evol.
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
13
-
-
72149111958
-
Pseudomonas pelagia sp. nov., isolated from a culture of the Antarctic green alga Pyramimonas gelidicola
-
Hwang, C.Y., Zhang, G.I., Kang, S.H., Kim, H.J., Cho, B.C., Pseudomonas pelagia sp. nov., isolated from a culture of the Antarctic green alga Pyramimonas gelidicola. Int. J. Syst. Evol. Microbiol. 59 (2009), 3019–3024.
-
(2009)
Int. J. Syst. Evol. Microbiol.
, vol.59
, pp. 3019-3024
-
-
Hwang, C.Y.1
Zhang, G.I.2
Kang, S.H.3
Kim, H.J.4
Cho, B.C.5
-
14
-
-
0000732090
-
Evolution of protein molecules
-
H.N. Munro Academic Press New York
-
Jukes, T., Cantor, C., Evolution of protein molecules. Munro, H.N., (eds.) Mammalian Protein Metabolism, 1969, Academic Press, New York, 21–132.
-
(1969)
Mammalian Protein Metabolism
, pp. 21-132
-
-
Jukes, T.1
Cantor, C.2
-
15
-
-
60549089876
-
Pseudomonas sabulinigri sp. nov., isolated from black beach sand
-
Kim, K.H., Roh, S.W., Chang, H.W., Nam, Y.D., Yoon, J.H., Jeon, C.O., Oh, H.M., Bae, J.W., Pseudomonas sabulinigri sp. nov., isolated from black beach sand. Int. J. Syst. Evol. Microbiol. 59 (2009), 38–41.
-
(2009)
Int. J. Syst. Evol. Microbiol.
, vol.59
, pp. 38-41
-
-
Kim, K.H.1
Roh, S.W.2
Chang, H.W.3
Nam, Y.D.4
Yoon, J.H.5
Jeon, C.O.6
Oh, H.M.7
Bae, J.W.8
-
16
-
-
0016724096
-
Pseudomonas pertucinogena sp. nov., an organism previously misidentified as Bordetella pertussis
-
Kawai, Y., Yabuuchi, E., Pseudomonas pertucinogena sp. nov., an organism previously misidentified as Bordetella pertussis. Int. J. Syst. Bacteriol. 25 (1975), 317–323.
-
(1975)
Int. J. Syst. Bacteriol.
, vol.25
, pp. 317-323
-
-
Kawai, Y.1
Yabuuchi, E.2
-
17
-
-
0029561626
-
Differential subsequence conservation supports the mosaic nature of interspersed repetitive BOX elements in bacteria
-
Koeuth, T., Versalovic, J., Lupski, J.R., Differential subsequence conservation supports the mosaic nature of interspersed repetitive BOX elements in bacteria. Genome Res. 5 (1995), 408–418.
-
(1995)
Genome Res.
, vol.5
, pp. 408-418
-
-
Koeuth, T.1
Versalovic, J.2
Lupski, J.R.3
-
18
-
-
54749105451
-
Pseudomonas xiamenensis sp. nov., a denitrifying bacterium isolated from activated sludge
-
Lai, Q., Shao, Z., Pseudomonas xiamenensis sp. nov., a denitrifying bacterium isolated from activated sludge. Int. J. Syst. Evol. Microbiol. 58 (2008), 1911–1915.
-
(2008)
Int. J. Syst. Evol. Microbiol.
, vol.58
, pp. 1911-1915
-
-
Lai, Q.1
Shao, Z.2
-
19
-
-
33745675175
-
Analysis of refractile (R) bodies
-
F. Mayer Academic Press London
-
Lalucat, J., Analysis of refractile (R) bodies. Mayer, F., (eds.) Methods in Microbiology – Electron Microscopy in Microbiology, vol. 20, 1988, Academic Press, London, 79–90.
-
(1988)
Methods in Microbiology – Electron Microscopy in Microbiology
, vol.20
, pp. 79-90
-
-
Lalucat, J.1
-
20
-
-
84883803994
-
Pseudomonas formosensis sp. nov., a gamma-proteobacteria isolated from food-waste compost in Taiwan
-
Lin, S.Y., Hameed, A., Liu, Y.C., Hsu, Y.H., Lai, W.A., Young, C.C., Pseudomonas formosensis sp. nov., a gamma-proteobacteria isolated from food-waste compost in Taiwan. Int. J. Syst. Evol. Microbiol. 63 (2013), 3168–3174.
-
(2013)
Int. J. Syst. Evol. Microbiol.
, vol.63
, pp. 3168-3174
-
-
Lin, S.Y.1
Hameed, A.2
Liu, Y.C.3
Hsu, Y.H.4
Lai, W.A.5
Young, C.C.6
-
21
-
-
67651115858
-
Pseudomonas xinjiangensis sp. nov., a moderately thermotolerant bacterium isolated from desert sand
-
Liu, M., Luo, X., Zhang, L., Dai, J., Wang, Y., Tang, Y., Li, J., Sun, T., Fang, C., Pseudomonas xinjiangensis sp. nov., a moderately thermotolerant bacterium isolated from desert sand. Int. J. Syst. Evol. Microbiol. 59 (2009), 1286–1289.
-
(2009)
Int. J. Syst. Evol. Microbiol.
, vol.59
, pp. 1286-1289
-
-
Liu, M.1
Luo, X.2
Zhang, L.3
Dai, J.4
Wang, Y.5
Tang, Y.6
Li, J.7
Sun, T.8
Fang, C.9
-
22
-
-
0004036449
-
Molecular Evolution and Phylogenetics
-
Oxford University Press New York
-
Nei, M., Kumar, S., Molecular Evolution and Phylogenetics. 2000, Oxford University Press, New York.
-
(2000)
-
-
Nei, M.1
Kumar, S.2
-
23
-
-
84874011652
-
Genome sequence-based species delimitation with confidence intervals and improved distance functions
-
Meier-Kolthoff, J.P., Auch, A.F., Klenk, H.P., Göker, M., Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics, 14, 2013, 60.
-
(2013)
BMC Bioinformatics
, vol.14
, pp. 60
-
-
Meier-Kolthoff, J.P.1
Auch, A.F.2
Klenk, H.P.3
Göker, M.4
-
24
-
-
34547588704
-
KAAS: an automatic genome annotation and pathway reconstruction server
-
Moriya, Y., Itoh, M., Okuda, S., Yoshizawa, A., Kanehisa, M., KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res. 35 (2007), W182–W185.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. W182-W185
-
-
Moriya, Y.1
Itoh, M.2
Okuda, S.3
Yoshizawa, A.4
Kanehisa, M.5
-
25
-
-
77955516907
-
DNA sequence-based analysis of the Pseudomonas species
-
Mulet, M., Lalucat, J., García-Valdés, E., DNA sequence-based analysis of the Pseudomonas species. Environ. Microbiol. 12 (2010), 1513–1530.
-
(2010)
Environ. Microbiol.
, vol.12
, pp. 1513-1530
-
-
Mulet, M.1
Lalucat, J.2
García-Valdés, E.3
-
26
-
-
79551482706
-
Pseudomonas diversity in crude-oil-contaminated intertidal sand samples obtained after the Prestige oil spill
-
Mulet, M., David, Z., Nogales, B., Bosch, R., Lalucat, J., García-Valdés, E., Pseudomonas diversity in crude-oil-contaminated intertidal sand samples obtained after the Prestige oil spill. Appl. Environ. Microbiol. 77 (2011), 1076–1085.
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 1076-1085
-
-
Mulet, M.1
David, Z.2
Nogales, B.3
Bosch, R.4
Lalucat, J.5
García-Valdés, E.6
-
27
-
-
84868690571
-
Concordance between whole-cell matrix-assisted laser-desorption/ionization time-of-flight mass spectrometry and multilocus sequence analysis approaches in species discrimination within the genus Pseudomonas
-
Mulet, M., Gomila, M., Scotta, C., Sánchez, D., Lalucat, J., García-Valdés, E., Concordance between whole-cell matrix-assisted laser-desorption/ionization time-of-flight mass spectrometry and multilocus sequence analysis approaches in species discrimination within the genus Pseudomonas. Syst. Appl. Microbiol. 35 (2012), 455–464.
-
(2012)
Syst. Appl. Microbiol.
, vol.35
, pp. 455-464
-
-
Mulet, M.1
Gomila, M.2
Scotta, C.3
Sánchez, D.4
Lalucat, J.5
García-Valdés, E.6
-
28
-
-
84991338076
-
Uncommonly isolated clinical Pseudomonas: identification and phylogenetic assignation
-
Mulet, M., Gomila, M., Ramírez, A., Cardew, S., Moore, E.R., Lalucat, J., García-Valdés, E., Uncommonly isolated clinical Pseudomonas: identification and phylogenetic assignation. Eur. J. Clin. Microbiol. Infect. Dis. 36 (2017), 351–359.
-
(2017)
Eur. J. Clin. Microbiol. Infect. Dis.
, vol.36
, pp. 351-359
-
-
Mulet, M.1
Gomila, M.2
Ramírez, A.3
Cardew, S.4
Moore, E.R.5
Lalucat, J.6
García-Valdés, E.7
-
29
-
-
0000803252
-
Genus I. Pseudomonas Migula 1984, 237AL
-
N.R. Krieg J.G. Holt Williams & Wilkins Baltimore
-
Palleroni, N.J., Genus I. Pseudomonas Migula 1984, 237AL. Krieg, N.R., Holt, J.G., (eds.) Bergey's Manual of Systematic Bacteriology, vol. 1, 1984, Williams & Wilkins, Baltimore, 141–199.
-
(1984)
Bergey's Manual of Systematic Bacteriology
, vol.1
, pp. 141-199
-
-
Palleroni, N.J.1
-
30
-
-
84891817929
-
LPSN-list of prokaryotic names with standing in nomenclature
-
Parte, A.C., LPSN-list of prokaryotic names with standing in nomenclature. Nucleic Acids Res. 42 (2014), D613–D616.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D613-D616
-
-
Parte, A.C.1
-
31
-
-
84856766994
-
Pseudomonas litoralis sp. nov., isolated from Mediterranean seawater
-
Pascual, J., Lucena, T., Ruvira, M.A., Giordano, A., Gambacorta, A., Garay, E., Arabal, D.R., Pujalte, M.J., Macián, M.C., Pseudomonas litoralis sp. nov., isolated from Mediterranean seawater. Int. J. Syst. Evol. Microbiol. 62 (2012), 438–444.
-
(2012)
Int. J. Syst. Evol. Microbiol.
, vol.62
, pp. 438-444
-
-
Pascual, J.1
Lucena, T.2
Ruvira, M.A.3
Giordano, A.4
Gambacorta, A.5
Garay, E.6
Arabal, D.R.7
Pujalte, M.J.8
Macián, M.C.9
-
32
-
-
73149098333
-
Shifting the genomic gold standard for the prokaryotic species definition
-
Richter, M., Rosselló-Mora, R., Shifting the genomic gold standard for the prokaryotic species definition. Proc. Natl. Acad. Sci. U. S. A. 106:45 (2009), 19126–19131.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, Issue.45
, pp. 19126-19131
-
-
Richter, M.1
Rosselló-Mora, R.2
-
33
-
-
16844367111
-
Pseudomonas pachastrellae sp. nov., isolated from a marine sponge
-
Romanenko, L.A., Uchino, M., Falsen, E., Frolova, G.M., Zhukova, N.V., Mikhailov, V.V., Pseudomonas pachastrellae sp. nov., isolated from a marine sponge. Int. J. Syst. Evol. Microbiol. 55 (2005), 919–924.
-
(2005)
Int. J. Syst. Evol. Microbiol.
, vol.55
, pp. 919-924
-
-
Romanenko, L.A.1
Uchino, M.2
Falsen, E.3
Frolova, G.M.4
Zhukova, N.V.5
Mikhailov, V.V.6
-
34
-
-
84896728231
-
Pseudomonas aestusnigri sp. nov., isolated from crude oil-contaminated intertidal sand samples after the Prestige oil spill
-
Sánchez, D., Mulet, M., Rodríguez, A.C., David, Z., Lalucat, J., García-Valdés, E., Pseudomonas aestusnigri sp. nov., isolated from crude oil-contaminated intertidal sand samples after the Prestige oil spill. Syst. Appl. Microbiol. 37 (2014), 89–94.
-
(2014)
Syst. Appl. Microbiol.
, vol.37
, pp. 89-94
-
-
Sánchez, D.1
Mulet, M.2
Rodríguez, A.C.3
David, Z.4
Lalucat, J.5
García-Valdés, E.6
-
35
-
-
0026323259
-
Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes
-
Versalovic, J., Koeuth, T., Lupski, J.R., Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res. 19 (1991), 6823–6831.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 6823-6831
-
-
Versalovic, J.1
Koeuth, T.2
Lupski, J.R.3
-
36
-
-
84994486587
-
Pseudomonas oceani sp. nov., isolated from deep seawater
-
Wang, M.Q., Sun, L., Pseudomonas oceani sp. nov., isolated from deep seawater. Int. J. Syst. Evol. Microbiol. 66 (2016), 4250–4255.
-
(2016)
Int. J. Syst. Evol. Microbiol.
, vol.66
, pp. 4250-4255
-
-
Wang, M.Q.1
Sun, L.2
-
37
-
-
84890118796
-
Pseudomonas yangmingensis sp. nov., an alkaliphilic denitrifying species isolated from a hot spring
-
Wong, B.T., Lee, D.J., Pseudomonas yangmingensis sp. nov., an alkaliphilic denitrifying species isolated from a hot spring. J. Biosci. Bioeng. 117 (2014), 71–74.
-
(2014)
J. Biosci. Bioeng.
, vol.117
, pp. 71-74
-
-
Wong, B.T.1
Lee, D.J.2
-
38
-
-
80053895199
-
Pseudomonas bauzanensis sp. nov., isolated from soil
-
Zhang, D.C., Liu, H.C., Zhou, Y.G., Schinner, F., Margesin, R., Pseudomonas bauzanensis sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. 61 (2011), 2333–2337.
-
(2011)
Int. J. Syst. Evol. Microbiol.
, vol.61
, pp. 2333-2337
-
-
Zhang, D.C.1
Liu, H.C.2
Zhou, Y.G.3
Schinner, F.4
Margesin, R.5
-
39
-
-
84943569197
-
Pseudomonas salina sp. nov., isolated from a salt lake
-
Zhong, Z.P., Liu, Y., Hou, T.T., Liu, H.C., Zhou, Y.G., Wang, F., Liu, Z.P., Pseudomonas salina sp. nov., isolated from a salt lake. Int. J. Syst. Evol. Microbiol. 65 (2015), 2846–2851.
-
(2015)
Int. J. Syst. Evol. Microbiol.
, vol.65
, pp. 2846-2851
-
-
Zhong, Z.P.1
Liu, Y.2
Hou, T.T.3
Liu, H.C.4
Zhou, Y.G.5
Wang, F.6
Liu, Z.P.7
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