Parallel validation of three molecular devices for simultaneous detection and identification of influenza A and B and respiratory syncytial viruses

Journal of Clinical Microbiology

Volumn 56, Issue 3, 2018, Pages

  Ling, Lifen ^a,b   Kaplan, Samuel E ^b   Lopez, Juan C ^b   Stiles, Jeffrey ^b   Lu, Xuedong ^a   Tang, Yi Wei ^b,c  

^a THE EIGHTH AFFILIATED HOSPITAL OF SUN YAT SEN UNIVERSITY   (China)

^b MEMORIAL SLOAN KETTERING CANCER CENTER   (United States)

^c WEILL CORNELL MEDICAL COLLEGE   (United States)

Author keywords

B; Hands on time; Influenza viruses A; Molecular testing; Respiratory syncytial virus; Turnaround time

Indexed keywords

ARTICLE; CONTROLLED STUDY; DIAGNOSTIC TEST ACCURACY STUDY; HUMAN; HUMAN RESPIRATORY SYNCYTIAL VIRUS; ID50 (INFECTIOUS); INFLUENZA A VIRUS; INFLUENZA B VIRUS; INTERMETHOD COMPARISON; LIMIT OF DETECTION; NASOPHARYNX; NONHUMAN; PERFORMANCE; PRIORITY JOURNAL; REPRODUCIBILITY; RETROSPECTIVE STUDY; SENSITIVITY AND SPECIFICITY; TURNAROUND TIME; VALIDATION STUDY; VIRUS IDENTIFICATION; VIRUS STRAIN; VIRUS TITRATION; COMPARATIVE STUDY; DEVICES; EVALUATION STUDY; FEMALE; ISOLATION AND PURIFICATION; MALE; MOLECULAR DIAGNOSIS; RESPIRATORY TRACT INFECTION; STANDARDS; TIME FACTOR; VIROLOGY;

FEMALE; HUMANS; INFLUENZA A VIRUS; INFLUENZA B VIRUS; MALE; MOLECULAR DIAGNOSTIC TECHNIQUES; NASOPHARYNX; REPRODUCIBILITY OF RESULTS; RESPIRATORY SYNCYTIAL VIRUS, HUMAN; RESPIRATORY TRACT INFECTIONS; SENSITIVITY AND SPECIFICITY; TIME FACTORS;

EID: 85042612896     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.01691-17     Document Type: Article

References (24)

1. Jain S, Williams DJ, Arnold SR, Ampofo K, Bramley AM, Reed C, Stock-mann C, Anderson EJ, Grijalva CG, Self WH, Zhu Y, Patel A, Hymas W, Chappell JD, Kaufman RA, Kan JH, Dansie D, Lenny N, Hillyard DR, Haynes LM, Levine M, Lindstrom S, Winchell JM, Katz JM, Erdman D, Schneider E, Hicks LA, Wunderink RG, Edwards KM, Pavia AT, McCullers JA, Finelli L, Centers for Disease Control and Prevention (CDC) Etiology of Pneumonia in the Community (EPIC) Study Team. 2015. Community-acquired pneumonia requiring hospitalization among U.S. children. N Engl J Med 372:835–845. https://doi.org/10.1056/NEJMoa1405870.
2. Hall CB, Weinberg GA, Iwane MK, Blumkin AK, Edwards KM, Staat MA, Auinger P, Griffin MR, Poehling KA, Erdman D, Grijalva CG, Zhu Y, Szilagyi P. 2009. The burden of respiratory syncytial virus infection in young children. N Engl J Med 360:588–598. https://doi.org/10.1056/NEJMoa0804877.
3. Harper SA, Bradley JS, Englund JA, File TM, Gravenstein S, Hayden FG, McGeer AJ, Neuzil KM, Pavia AT, Tapper ML, Uyeki TM, Zimmerman RK, Expert Panel of the Infectious Diseases Society of America. 2009. Seasonal influenza in adults and children–diagnosis, treatment, chemopro-phylaxis, and institutional outbreak management: clinical practice guidelines of the Infectious Diseases Society of America. Clin Infect Dis 48:1003–1032. https://doi.org/10.1086/598513.
4. Macartney KK, Gorelick MH, Manning ML, Hodinka RL, Bell LM. 2000. Nosocomial respiratory syncytial virus infections: the cost-effectiveness and cost-benefit of infection control. Pediatrics 106:520–526. https://doi.org/10.1542/peds.106.3.520.
5. Chartrand C, Tremblay N, Renaud C, Papenburg J. 2015. Diagnostic accuracy of rapid antigen detection tests for respiratory syncytial virus infection: systematic review and meta-analysis. J Clin Microbiol 53: 3738–3749. https://doi.org/10.1128/JCM.01816-15.
6. Ginocchio CC. 2007. Detection of respiratory viruses using non-molecular based methods. J Clin Virol 40(Suppl 1):S11–S14. https://doi.org/10.1016/S1386-6532(07)70004-5.
7. Rappo U, Schuetz AN, Jenkins SG, Calfee DP, Walsh TJ, Wells MT, Hollenberg JP, Glesby MJ. 2016. Impact of early detection of respiratory viruses by multiplex PCR assay on clinical outcomes in adult patients. J Clin Microbiol 54:2096–2103. https://doi.org/10.1128/JCM.00549-16.
8. Rogan DT, Kochar MS, Yang S, Quinn JV. 2017. Impact of rapid molecular respiratory virus testing on real-time decision making in a pediatric emergency department. J Mol Diagn 19:460–467. https://doi.org/10.1016/j.jmoldx.2017.01.009.
9. Schulert GS, Lu Z, Wingo T, Tang YW, Saville BR, Hain PD. 2013. Role of a respiratory viral panel in the clinical management of pediatric inpatients. Pediatr Infect Dis J 32:467–472. https://doi.org/10.1097/INF.0b013e318284b146.
10. Xu M, Qin X, Astion ML, Rutledge JC, Simpson J, Jerome KR, Englund JA, Zerr DM, Migita RT, Rich S, Childs JC, Cent A, Del Beccaro MA. 2013. Implementation of FilmArray respiratory viral panel in a core laboratory improves testing turnaround time and patient care. Am J Clin Pathol 139:118–123. https://doi.org/10.1309/AJCPH7X3NLYZPHBW.
11. Caliendo AM. 2011. Multiplex PCR and emerging technologies for the detection of respiratory pathogens. Clin Infect Dis 52(Suppl 4): S326–S330. https://doi.org/10.1093/cid/cir047.
12. Babady NE, Mead P, Stiles J, Brennan C, Li H, Shuptar S, Stratton CW, Tang YW, Kamboj M. 2012. Comparison of the Luminex xTAG RVP Fast assay and the Idaho Technology FilmArray RP assay for detection of respiratory viruses in pediatric patients at a cancer hospital. J Clin Microbiol 50:2282–2288. https://doi.org/10.1128/JCM.06186-11.
13. Cohen DM, Kline J, May LS, Harnett GE, Gibson J, Liang SY, Rafique Z, Rodriguez CA, McGann KM, Gaydos CA, Mayne D, Phillips D, Cohen J. 2017. Accurate PCR detection of Influenza A/B and respiratory syncytial viruses by use of Cepheid Xpert FluRSV Xpress Assay in point-of-care settings: comparison to Prodesse ProFlu. J Clin Microbiol 56: e01237–17. https://doi.org/10.1128/JCM.01237-17.
14. Gibson J, Schechter-Perkins EM, Mitchell P, Mace S, Tian Y, Williams K, Luo R, Yen-Lieberman B. 2017. Multi-center evaluation of the cobas Liat influenza A/B & RSV assay for rapid point of care diagnosis. J Clin Virol 95:5–9. https://doi.org/10.1016/j.jcv.2017.08.004.
15. Juretschko S, Mahony J, Buller RS, Manjj R, Dunbar S, Walker K, Rao A. 2017. Multicenter clinical evaluation of the Luminex Aries Flu A/B & RSV assay for pediatric and adult respiratory tract specimens. J Clin Microbiol 55:2431–2438. https://doi.org/10.1128/JCM.00318-17.
16. Nie S, Roth RB, Stiles J, Mikhlina A, Lu X, Tang YW, Babady NE. 2014. Evaluation of Alere i influenza A&B for rapid detection of influenza viruses A and B. J Clin Microbiol 52:3339–3344. https://doi.org/10.1128/JCM.01132-14.
17. Steensels D, Reynders M, Descheemaeker P, Curran MD, Jacobs F, Denis O, Delforge ML, Montesinos I. 2017. Performance evaluation of direct fluorescent antibody, Focus Diagnostics Simplexa Flu A/B & RSV and multi-parameter customized respiratory Taqman array card in immunocompromised patients. J Virol Methods 245:61–65. https://doi.org/10.1016/j.jviromet.2017.03.013.
18. Tang YW, Gonsalves S, Sun JY, Stiles J, Gilhuley KA, Mikhlina A, Dunbar SA, Babady NE, Zhang H. 2016. Clinical evaluation of the Luminex NxTAG respiratory pathogen panel. J Clin Microbiol 54:1912–1914. https://doi.org/10.1128/JCM.00482-16.
19. Voermans JJ, Seven-Deniz S, Fraaij PL, van der Eijk AA, Koopmans MP, Pas SD. 2016. Performance evaluation of a rapid molecular diagnostic, MultiCode based, sample-to-answer assay for the simultaneous detection of influenza A, B and respiratory syncytial viruses. J Clin Virol 85:65–70. https://doi.org/10.1016/j.jcv.2016.10.019.
20. Kozel TR, Burnham-Marusich AR. 2017. Point-of-care Testing for infectious diseases: past, present, and future. J Clin Microbiol 55:2313–2320. https://doi.org/10.1128/JCM.00476-17.
21. Binnicker MJ, Espy MJ, Irish CL, Vetter EA. 2015. Direct detection of influenza A and B viruses in less than 20 minutes using a commercially available rapid PCR assay. J Clin Microbiol 53:2353–2354. https://doi.org/10.1128/JCM.00791-15.
22. Young S, Illescas P, Nicasio J, Sickler JJ. 2017. Diagnostic accuracy of the real-time PCR cobas Liat influenza A/B assay and the Alere i influenza A&B NEAR isothermal nucleic acid amplification assay for the detection of influenza using adult nasopharyngeal specimens. J Clin Virol 94: 86–90. https://doi.org/10.1016/j.jcv.2017.07.012.
23. Nolte FS, Gauld L, Barrett SB. 2016. Direct comparison of Alere i and cobas Liat influenza A and B tests for rapid detection of influenza virus infection. J Clin Microbiol 54:2763–2766. https://doi.org/10.1128/JCM.01586-16.
24. Ginocchio CC, Zhang F, Manji R, Arora S, Bornfreund M, Falk L, Lotlikar M, Kowerska M, Becker G, Korologos D, de Geronimo M, Crawford JM. 2009. Evaluation of multiple test methods for the detection of the novel 2009 influenza A (H1N1) during the New York City outbreak. J Clin Virol 45:191–195. https://doi.org/10.1016/j.jcv.2009.06.005.