CASCIRE surveillance network and work on avian influenza viruses

Science China Life Sciences

Volumn 60, Issue 12, 2017, Pages 1386-1391

  Bi, Yuhai ^a,b   Shi, Weifeng ^c   Chen, Jianjun ^d   Chen, Quanjiao ^d   Ma, Zhenghai ^e   Wong, Gary ^b   Tian, Wenxia ^f   Yin, Renfu ^g   Fu, Guanghua ^h   Yang, Yongchun ⁱ   Liu, William J ^j   Quan, Chuansong ^j   Wang, Qianli ^k   He, Shenghu ^l   Li, Xiangdong ^m   Xia, Qianfeng ⁿ   Wang, Lixin ⁿ   Pan, Zhaohui ^o   Li, Laixing ^p   Li, Hong ^q   Xu, Wen ^q   Luo, Ying ^r   Zeng, Hui ^s   Dai, Lianpan ^t   Xiao, Haixia ^u   Sharshov, Kirill ^v   Shestopalov, Alexander ^v   Shi, Yi ^a,b   Yan, Jinghua ^a,b   Li, Xuebing ^a   Liu, Yingxia ^b   Lei, Fumin ^t   Liu, Wenjun ^a   Gao, George F ^a,b,j   more..

^a INSTITUTE OF MICROBIOLOGY   (China)

^b SHENZHEN THIRD PEOPLE S HOSPITAL   (China)

^c SHANDONG PROVINCIAL HOSPITAL AFFILIATED TO SHANDONG FIRST MEDICAL UNIVERSITY   (China)

^d WUHAN INSTITUTE OF VIROLOGY   (China)

^e XINJIANG UNIVERSITY   (China)

^f SHANXI AGRICULTURAL UNIVERSITY   (China)

^g JILIN UNIVERSITY   (China)

^h INSTITUTE OF PLANT PROTECTION   (China)

ⁱ ZHEJIANG A F UNIVERSITY   (China)

^j CHINESE CENTER FOR DISEASE CONTROL AND PREVENTION   (China)

^k FUDAN UNIVERSITY   (China)

^l NINGXIA UNIVERSITY   (China)

^m National Research Center for Veterinary Medicine   (China)

ⁿ HAINAN MEDICAL UNIVERSITY   (China)

^o Tibet Agriculture and Animal Husbandry University   (China)

^p NORTHWEST INSTITUTE OF PLATEAU BIOLOGY   (China)

^q YUNNAN PROVINCIAL CENTER FOR DISEASE CONTROL AND PREVENTION   (China)

^r State Forestry Administration   (China)

^s CAPITAL MEDICAL UNIVERSITY   (China)

^t INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

^u Chinese Academy of Sciences   (China)

^v NOVOSIBIRSK STATE UNIVERSITY   (Russian Federation)

more..

Author keywords

[No Author keywords available]

Indexed keywords

ANTIVIRUS AGENT;

ANIMAL; ANTIVIRAL RESISTANCE; AVIAN INFLUENZA; BIRD; DISEASE CARRIER; DRUG EFFECT; EVOLUTION; GENETICS; GEOGRAPHY; HEALTH SURVEY; HOST PATHOGEN INTERACTION; HUMAN; INFLUENZA; INFLUENZA A VIRUS; PHYSIOLOGY; POULTRY; TRANSMISSION; VIRAL TROPISM; VIROLOGY;

ANIMALS; ANTIVIRAL AGENTS; BIOLOGICAL EVOLUTION; BIRDS; DISEASE RESERVOIRS; DRUG RESISTANCE, VIRAL; GEOGRAPHY; HOST-PATHOGEN INTERACTIONS; HUMANS; INFLUENZA A VIRUS; INFLUENZA IN BIRDS; INFLUENZA, HUMAN; POPULATION SURVEILLANCE; POULTRY; VIRAL TROPISM;

EID: 85039853622     PISSN: 16747305     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11427-017-9251-2     Document Type: Article

References (51)

1. Bi, Y., Mei, K., Shi, W., Liu, D., Yu, X., Gao, Z., Zhao, L., Gao, G.F., Chen, J., and Chen, Q. (2015a). Two novel reassortants of avian influenza A (H5N6) virus in China. J Gene Virol 96, 975–981.
2. Bi, Y., Wong, G., Liu, Y., Liu, L., Gao, G.F., and Shi, Y. (2016e). Ribavirin is effective against drug-resistant H7N9 influenza virus infections. Protein Cell 7, 611–614.
3. Bi, Y., Xiao, H., Chen, Q., Wu, Y., Fu, L., Quan, C., Wong, G., Liu, J., Haywood, J., Liu, Y., Zhou, B., Yan, J., Liu, W., and Gao, G.F. (2015b). Changes in the length of the neuraminidase stalk region impact H7N9 virulence in mice. J Virol 90, 2142–2149.
4. Bi, Y., Xie, Q., Zhang, S., Li, Y., Xiao, H., Jin, T., Zheng, W., Li, J., Jia, X., Sun, L., Liu, J., Qin, C., Gao, G.F., and Liu, W. (2015c). Assessment of the internal genes of influenza A (H7N9) virus contributing to high pathogenicity in mice. J Virol 89, 2–13.
5. Bi, Y., Zhang, Z., Liu, W., Yin, Y., Hong, J., Li, X., Wang, H., Wong, G., Chen, J., Li, Y., Ru, W., Gao, R., Liu, D., Liu, Y., Zhou, B., Gao, G.F., Shi, W., and Lei, F. (2015d). Highly pathogenic avian influenza A (H5N1) virus struck migratory birds in China in 2015. Sci Rep 5, 12–986.
6. Bi, Y., Chen, J., Zhang, Z., Li, M., Cai, T., Sharshov, K., Susloparov, I., Shestopalov, A., Wong, G., He, Y., Xing, Z., Sun, J., Liu, D., Liu, Y., Liu, L., Liu, W., Lei, F., Shi, W., and Gao, G.F. (2016a). Highly pathogenic avian influenza H5N1 Clade 2.3.2.1c virus in migratory birds, 2014–2015. Virol Sin 31, 300–305.
7. Bi, Y., Chen, Q., Wang, Q., Chen, J., Jin, T., Wong, G., Quan, C., Liu, J., Wu, J., Yin, R., Zhao, L., Li, M., Ding, Z., Zou, R., Xu, W., Li, H., Wang, H., Tian, K., Fu, G., Huang, Y., Shestopalov, A., Li, S., Xu, B., Yu, H., Luo, T., Lu, L., Xu, X., Luo, Y., Liu, Y., Shi, W., Liu, D., and Gao, G.F. (2016b). Genesis, evolution and prevalence of H5N6 avian influenza viruses in China. Cell Host Microbe 20, 810–821.
8. Bi, Y., Liu, H., Xiong, C., Di Liu, C., Shi, W., Li, M., Liu, S., Chen, J., Chen, G., Li, Y., Yang, G., Lei, Y., Xiong, Y., Lei, F., Wang, H., Chen, Q., Chen, J., and Gao, G.F. (2016c). Novel avian influenza A (H5N6) viruses isolated in migratory waterfowl before the first human case reported in China, 2014. Sci Rep 6, 29888.
9. Bi, Y., Liu, J., Xiong, H., Zhang, Y., Liu, D., Liu, Y., Gao, G.F., and Wang, B. (2016d). A new reassortment of influenza A (H7N9) virus causing human infection in Beijing, 2014. Sci Rep 6, 26624.
10. Cao, S., Liu, X., Yu, M., Li, J., Jia, X., Bi, Y., Sun, L., Gao, G.F., and Liu, W. (2012). A nuclear export signal in the matrix protein of influenza A virus is required for efficient virus replication. J Virol 86, 4883–4891.
11. Cao, S., Jiang, J., Li, J., Li, Y., Yang, L., Wang, S., Yan, J., Gao, G.F., and Liu, W. (2014). Characterization of the nucleocytoplasmic shuttle of the matrix protein of influenza B virus. J Virol 88, 7464–7473.
12. Cui, L., Liu, D., Shi, W., Pan, J., Qi, X., Li, X., Guo, X., Zhou, M., Li, W., Li, J., Haywood, J., Xiao, H., Yu, X., Pu, X., Wu, Y., Yu, H., Zhao, K., Zhu, Y., Wu, B., Jin, T., Shi, Z., Tang, F., Zhu, F., Sun, Q., Wu, L., Yang, R., Yan, J., Lei, F., Zhu, B., Liu, W., Ma, J., Wang, H., and Gao, G.F. (2014). Dynamic reassortments and genetic heterogeneity of the human-infecting influenza A (H7N9) virus. Nat Commun 5, 3142.
13. Dai, L., Song, J., Lu, X., Deng, Y.Q., Musyoki, A.M., Cheng, H., Zhang, Y., Yuan, Y., Song, H., Haywood, J., Xiao, H., Yan, J., Shi, Y., Qin, C.F., Qi, J., and Gao, G.F. (2016). Structures of the Zika virus envelope protein and its complex with a flavivirus broadly protective antibody. Cell Host Microbe 19, 696–704.
14. Fu, L., Bi, Y., Wu, Y., Zhang, S., Qi, J., Li, Y., Lu, X., Zhang, Z., Lv, X., Yan, J., Gao, G.F., and Li, X. (2016). Structure-based tetravalent zanamivir with potent inhibitory activity against drug-resistant influenza viruses. J Med Chem 59, 6303–6312.
15. Gao, G.F. (2014). Influenza and the live poultry trade. Science 344, 235–235.
16. Gao, S., Wang, S., Cao, S., Sun, L., Li, J., Bi, Y., Gao, G.F., and Liu, W. (2014). Characteristics of nucleocytoplasmic transport of H1N1 influenza A virus nuclear export protein. J Virol 88, 7455–7463.
17. Hu, X., Liu, D., Wang, M., Yang, L., Wang, M., Zhu, Q., Li, L., and Gao, G.F. (2011). Clade 2.3.2 avian influenza virus (H5N1), Qinghai Lake Region, China, 2009–2010. Emerg Infect Dis 17, 560–562.
18. Hu, Y., Jiang, L., Lai, W., Qin, Y., Zhang, T., Wang, S., and Ye, X. (2016). microRNA-33a disturbs influenza A virus replication by targeting ARCN1 and inhibiting viral ribonucleoprotein activity. J Gene Virol 97, 27–38.
19. Jiang, J., Li, J., Fan, W., Zheng, W., Yu, M., Chen, C., Sun, L., Bi, Y., Ding, C., Gao, G.F., and Liu, W. (2016). Robust Lys63-linked ubiquitination of RIG-I promotes cytokine eruption in early influenza B virus infection. J Virol 90, 6263–6275.
20. Li, J., Chen, C., Wong, G., Dong, W., Zheng, W., Li, Y., Sun, L., Zhang, L., Gao, G.F., Bi, Y., and Liu, W. (2016). Cyclophilin A protects mice against infection by influenza A virus. Sci Rep 6, 28978.
21. Li, J., Zheng, W., Hou, L., Chen, C., Fan, W., Qu, H., Jiang, J., Liu, J., Gao, G.F., Zhou, J., Sun, L., and Liu, W. (2017). Differential nucleocytoplasmic shuttling of the nucleoprotein of influenza a viruses and association with host tropism. Cell Microbiol 19, e12692.
22. Li, Q., Qi, J., Zhang, W., Vavricka, C.J., Shi, Y., Wei, J., Feng, E., Shen, J., Chen, J., Liu, D., He, J., Yan, J., Liu, H., Jiang, H., Teng, M., Li, X., and Gao, G.F. (2010). The 2009 pandemic H1N1 neuraminidase N1 lacks the 150-cavity in its active site. Nat Struct Mol Biol 17, 1266–1268.
23. Liu, D., Shi, W., Shi, Y., Wang, D., Xiao, H., Li, W., Bi, Y., Wu, Y., Li, X., Yan, J., Liu, W., Zhao, G., Yang, W., Wang, Y., Ma, J., Shu, Y., Lei, F., and Gao, G.F. (2013). Origin and diversity of novel avian influenza A H7N9 viruses causing human infection: phylogenetic, structural, and coalescent analyses. Lancet 381, 1926–1932.
24. Liu, D., Shi, W., and Gao, G.F. (2014). Poultry carrying H9N2 act as incubators for novel human avian influenza viruses. Lancet 383, 869.
25. Liu, J., Xiao, H., Lei, F., Zhu, Q., Qin, K., Zhang, X.W., Zhang, X.L., Zhao, D., Wang, G., Feng, Y., Ma, J., Liu, W., Wang, J., and Gao, G.F. (2005). Highly pathogenic H5N1 influenza virus infection in migratory birds. Science 309, 1206–1206.
26. Liu, X., Sun, L., Yu, M., Wang, Z., Xu, C., Xue, Q., Zhang, K., Ye, X., Kitamura, Y., and Liu, W. (2009). Cyclophilin A interacts with influenza A virus M1 protein and impairs the early stage of the viral replication. Cell Microbiol 11, 730–741.
27. Liu, X., Zhao, Z., Xu, C., Sun, L., Chen, J., Zhang, L., and Liu, W. (2012). Cyclophilin A restricts influenza A virus replication through degradation of the M1 protein. PLoS ONE 7, e31063.
28. Lu, X., Shi, Y., Zhang, W., Zhang, Y., Qi, J., and Gao, G.F. (2013). Structure and receptor-binding properties of an airborne transmissible avian influenza A virus hemagglutinin H5 (VN1203mut). Protein Cell 4, 502–511.
29. Ma, Y., Ouyang, J., Wei, J., Maarouf, M., and Chen, J.L. (2016). Involvement of host non-coding RNAs in the pathogenesis of the influenza virus. Int J Mol Sci 18, 39.
30. Ouyang, J., Zhu, X., Chen, Y., Wei, H., Chen, Q., Chi, X., Qi, B., Zhang, L., Zhao, Y., Gao, G.F., Wang, G., and Chen, J.L. (2014). NRAV, a long noncoding RNA, modulates antiviral responses through suppression of interferon-stimulated gene transcription. Cell Host Microbe 16, 616–626.
31. Qi, W., Jia, W., Liu, D., Li, J., Bi, Y., Xie, S., Li, B., Hu, T., Du, Y., Xing, L., Zhang, J., Zhang, F., Wei, X., Eden, J.S., Li, H., Tian, H., Li, W., Su, G., Lao, G., Xu, C., Xu, B., Liu, W., Zhang, G., Ren, T., Holmes, E.C., Cui, J., Shi, W., Gao, G.F., and Liao, M. (2017). Emergence and adaptation of a novel highly pathogenic H7N9 influenza virus in birds and humans from a 2013-human-infecting low pathogenic ancestor. J Virol in press doi: 10.1128/JVI.00921-17.
32. Shi, Y., Zhang, W., Wang, F., Qi, J., Wu, Y., Song, H., Gao, F., Bi, Y., Zhang, Y., Fan, Z., Qin, C., Sun, H., Liu, J., Haywood, J., Liu, W., Gong, W., Wang, D., Shu, Y., Wang, Y., Yan, J., and Gao, G.F. (2013). Structures and receptor binding of hemagglutinins from human-infecting H7N9 influenza viruses. Science 342, 243–247.
33. Song, H., Qi, J., Khedri, Z., Diaz, S., Yu, H., Chen, X., Varki, A., Shi, Y., and Gao, G.F. (2016). An open receptor-binding cavity of hemagglutinin- esterase-fusion glycoprotein from newly-identified influenza D virus: basis for its broad cell tropism. PLoS Pathog 12, e1005411.
34. Song, H., Qi, J., Xiao, H., Bi, Y., Zhang, W., Xu, Y., Wang, F., Shi, Y., and Gao, G.F. (2017). Avian-to-human receptor-binding adaptation by influenza A virus hemagglutinin H4. Cell Rep 20, 1201–1214.
35. Su, S., Bi, Y., Wong, G., Gray, G.C., Gao, G.F., and Li, S. (2015). Epidemiology, evolution, and recent outbreaks of avian influenza virus in China. J Virol 89, 8671–8676.
36. Vavricka, C.J., Li, Q., Wu, Y., Qi, J., Wang, M., Liu, Y., Gao, F., Liu, J., Feng, E., He, J., Wang, J., Liu, H., Jiang, H., and Gao, G.F. (2011). Structural and functional analysis of laninamivir and its octanoate prodrug reveals group specific mechanisms for influenza NA inhibition. PLoS Pathog 7, e1002249.
37. Wang, F., Qi, J., Bi, Y., Zhang, W., Wang, M., Zhang, B., Wang, M., Liu, J., Yan, J., Shi, Y., and Gao, G.F. (2015a). Adaptation of avian influenza A (H6N1) virus from avian to human receptor-binding preference. EMBO J 34, 1661–1673.
38. Wang, G., Zhan, D., Li, L., Lei, F., Liu, B., Liu, D., Xiao, H., Feng, Y., Li, J., Yang, B., Yin, Z., Song, X., Zhu, X., Cong, Y., Pu, J., Wang, J., Liu, J., Gao, G.F., and Zhu, Q. (2008). H5N1 avian influenza re-emergence of Lake Qinghai: phylogenetic and antigenic analyses of the newly isolated viruses and roles of migratory birds in virus circulation. J Gene Virol 89, 697–702.
39. Wang, M., Zhang, W., Qi, J., Wang, F., Zhou, J., Bi, Y., Wu, Y., Sun, H., Liu, J., Huang, C., Li, X., Yan, J., Shu, Y., Shi, Y., and Gao, G.F. (2015b). Structural basis for preferential avian receptor binding by the human-infecting H10N8 avian influenza virus. Nat Commun 6, 5600.
40. Wang, Q., Yang, H., Liu, X., Dai, L., Ma, T., Qi, J., Wong, G., Peng, R., Liu, S., Li, J., Li, S., Song, J., Liu, J., He, J., Yuan, H., Xiong, Y., Liao, Y., Li, J., Yang, J., Tong, Z., Griffin, B.D., Bi, Y., Liang, M., Xu, X., Qin, C., Cheng, G., Zhang, X., Wang, P., Qiu, X., Kobinger, G., Shi, Y., Yan, J., and Gao, G.F. (2016). Molecular determinants of human neutralizing antibodies isolated from a patient infected with Zika virus. Sci Transl Med 8, 369ra179.
41. Wang, S., Zhao, Z., Bi, Y., Sun, L., Liu, X., and Liu, W. (2013). Tyrosine 132 phosphorylation of influenza A virus M1 protein is crucial for virus replication by controlling the nuclear import of M1. J Virol 87, 6182–6191.
42. Wang, Y., Tong, X., and Ye, X. (2012). Ndfip1 negatively regulates RIG-Idependent immune signaling by enhancing E3 ligase Smurf1-mediated MAVS degradation. J Immunol 189, 5304–5313.
43. Wu, Y., Bi, Y., Vavricka, C.J., Sun, X., Zhang, Y., Gao, F., Zhao, M., Xiao, H., Qin, C., He, J., Liu, W., Yan, J., Qi, J., and Gao, G.F. (2013). Characterization of two distinct neuraminidases from avian-origin human- infecting H7N9 influenza viruses. Cell Res 23, 1347–1355.
44. Wu, Y., Cho, M.S., Shore, D., Song, M., Choi, J.A., Jiang, T., Deng, Y.Q., Bourgeois, M., Almli, L., Yang, H., Chen, L.M., Shi, Y., Qi, J., Li, A., Yi, K.S., Chang, M.S., Bae, J.S., Lee, H.J., Shin, J.Y., Stevens, J., Hong, S.S., Qin, C.F., Gao, G.F., Chang, S.J., and Donis, R.O. (2015). A potent broad-spectrum protective human monoclonal antibody crosslinking two haemagglutinin monomers of influenza A virus. Nat Commun 6, 7708.
45. Yu, M., Liu, X., Cao, S., Zhao, Z., Zhang, K., Xie, Q., Chen, C., Gao, S., Bi, Y., Sun, L., Ye, X., Gao, G.F., and Liu, W. (2012). Identification and characterization of three novel nuclear export signals in the influenza A virus nucleoprotein. J Virol 86, 4970–4980.
46. Zhang, F., Bi, Y., Wang, J., Wong, G., Shi, W., Hu, F., Yang, Y., Yang, L., Deng, X., Jiang, S., He, X., Liu, Y., Yin, C., Zhong, N., and Gao, G.F. (2017). Human infections with recently-emerging highly pathogenic H7N9 avian influenza virus in China. J Infect 75, 71–75.
47. Zhang, J., Li, G., and Ye, X. (2010). Cyclin T1/CDK9 interacts with influenza A virus polymerase and facilitates its association with cellular rna polymerase II. J Virol 84, 12619–12627.
48. Zhang, T., Bi, Y., Tian, H., Li, X., Liu, D., Wu, Y., Jin, T., Wang, Y., Chen, Q., Chen, Z., Chang, J., Gao, G.F., and Xu, B. (2014). Human infection with influenza virus A(H10N8) from live poultry markets, China, 2014. Emerg Infect Dis in press doi: 10.3201/eid2012.140911.
49. Zhang, W., Shi, Y., Lu, X., Shu, Y., Qi, J., and Gao, G.F. (2013a). An airborne transmissible avian influenza H5 hemagglutinin seen at the atomic level. Science 340, 1463–1467.
50. Zhang, W., Shi, Y., Qi, J., Gao, F., Li, Q., Fan, Z., Yan, J., and Gao, G.F. (2013b). Molecular basis of the receptor binding specificity switch of the hemagglutinins from both the 1918 and 2009 pandemic influenza A viruses by a D225G substitution. J Virol 87, 5949–5958.
51. Zheng, W., Cao, S., Chen, C., Li, J., Zhang, S., Jiang, J., Niu, Y., Fan, W., Li, Y., Bi, Y., Gao, G.F., Sun, L., and Liu, W. (2017). Threonine 80 phosphorylation of non-structural protein 1 regulates the replication of influenza A virus by reducing the binding affinity with RIG-I. Cell Microbiol 19, e12643.