PhenoPlasm: a database of disruption phenotypes for malaria parasite genes

Wellcome Open Research

Volumn 2, Issue , 2017, Pages

  Sanderson, Theo ^a   Rayner, Julian C ^a  

^a WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85039153959     PISSN: None     EISSN: 2398502X     Source Type: Journal    
DOI: 10.12688/wellcomeopenres.11896.1     Document Type: Article

References (16)

1. Aurrecoechea C, Brestelli J, Brunk BP, et al.: PlasmoDB: a functional genomic database for malaria parasites. Nucleic Acids Res. 2009; 37(Database issue): D539–43.
2. Bronner IF, Otto TD, Zhang M, et al.: Quantitative insertion-site sequencing (QIseq) for high throughput phenotyping of transposon mutants. Genome Res. 2016; 26(7): 980–989.
3. Bunnik EM, Batugedara G, Saraf A, et al.: The mRNA-bound proteome of the human malaria parasite Plasmodium falciparum. Genome Biol. 2016; 17(1): 147.
4. Bushell E, Gomes AR, Sanderson T, et al.: Functional profiling of a Plasmodium genome shows a high incidence of essential genes in an intracellular parasite. Cell. 2017.
5. de Koning-Ward TF, Gilson PR, Crabb BS: Advances in molecular genetic systems in malaria. Nat Rev Microbiol. 2015; 13(6): 373–387.
6. Gomes AR, Bushell E, Schwach F, et al.: A genome-scale vector resource enables high-throughput reverse genetic screening in a malaria parasite. Cell Host Microbe. 2015; 17(3): 404–413.
7. Good BM, Su AI: Crowdsourcing for bioinformatics. Bioinformatics. 2013; 29(16): 1925–1933.
8. Karp PD: Crowd-sourcing and author submission as alternatives to professional curation. Database (Oxford). 2016; 2016: pii: baw149.
9. Khan SM, Kroeze H, Franke-Fayard B, et al.: Standardization in generating and reporting genetically modified rodent malaria parasites: the RMgmDB database. Methods Mol Biol. 2013; 923: 139–50.
10. Kocken CH, Ozwara H, van der Wel A, et al.: Plasmodium knowlesi provides a rapid in vitro and in vivo transfection system that enables double-crossover gene knockout studies. Infect Immun. 2002; 70(2): 655–660.
11. Lee I, Hong W: RAP--a putative RNA-binding domain. Trends Biochem Sci. 2004; 29(11): 567–570.
12. Maier AG, Rug M, O'Neill MT, et al.: Exported proteins required for virulence and rigidity of Plasmodium falciparum-infected human erythrocytes. Cell. 2008; 134(1): 48–61.
13. Moon RW, Hall J, Rangkuti F, et al.: Adaptation of the genetically tractable malaria pathogen Plasmodium knowlesi to continuous culture in human erythrocytes. Proc Natl Acad Sci U S A. 2013; 110(2): 531–6.
14. Sidik SM, Huet D, Ganesan SM, et al.: A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Cell. 2016; 166(6): 1423–1435.e12.
15. Solyakov L, Halbert J, Alam MM, et al.: Global kinomic and phospho-proteomic analyses of the human malaria parasite Plasmodium falciparum. Nat Commun. 2011; 2: 565.
16. Zuzarte-Luis V, Mota MM, Vigário AM: Malaria infections: What and how can mice teach us. J Immunol Methods. 2014; 410: 113–122.