-
1
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequences of two proteins
-
Needleman, S. B. & Wunsch, C. D. (1970) A general method applicable to the search for similarities in the amino acid sequences of two proteins. J. Mol. Biol, 48, 443-453.
-
(1970)
J. Mol. Biol
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
3
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990) Basic local alignment search tool. J. Mol. Biol, 215, 403-410.
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
4
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic. Acids Res., 25, 3389-3402.
-
(1997)
Nucleic. Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
5
-
-
0023989064
-
Improved tools for biological sequence comparisons
-
Pearson, W. R. & Lipman, D. J. (1988) Improved tools for biological sequence comparisons. Proc. Nat. Acad. Sci. USA, 85, 2444-2448.
-
(1988)
Proc. Nat. Acad. Sci. USA
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
6
-
-
0030660580
-
Gene families: The taxonomy of protein paralogs and chimeras
-
Henikoff, S., Greene, E. A., Pietrokovski, S., Bork, P., Attwood, T. K. & Hood, L. (1997) Gene families: The taxonomy of protein paralogs and chimeras. Science 278, 609-614.
-
(1997)
Science
, vol.278
, pp. 609-614
-
-
Henikoff, S.1
Greene, E.A.2
Pietrokovski, S.3
Bork, P.4
Attwood, T.K.5
Hood, L.6
-
7
-
-
0030660581
-
A genomic perspective on protein families
-
Tatusov, R. L., Koonin, E. V. & Lipman, D. J. (1997) A genomic perspective on protein families. Science 278, 631-637.
-
(1997)
Science
, vol.278
, pp. 631-637
-
-
Tatusov, R.L.1
Koonin, E.V.2
Lipman, D.J.3
-
8
-
-
0028118434
-
Protein family classification based on searching a database of blocks
-
Henikoff, S. & Henikoff, J. G. (1994) Protein family classification based on searching a database of blocks. Genomics, 19, 97-107.
-
(1994)
Genomics
, vol.19
, pp. 97-107
-
-
Henikoff, S.1
Henikoff, J.G.2
-
9
-
-
0023375315
-
Profile analysis: Detection of distantly related proteins
-
Gribskov, M., McLachlan, A. D. & Eisenberg, D. (1987) Profile analysis: Detection of distantly related proteins. Proc. Natl. Acad. Sci. USA, 84, 4355-4358.
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 4355-4358
-
-
Gribskov, M.1
McLachlan, A.D.2
Eisenberg, D.3
-
10
-
-
0029665409
-
Identification of sequence pattern with profile analysis
-
Gribskov, M. & Veretnik, S. (1996). Identification of sequence pattern with profile analysis. Methods Enzymol., 266, 198-212.
-
(1996)
Methods Enzymol
, vol.266
, pp. 198-212
-
-
Gribskov, M.1
Veretnik, S.2
-
11
-
-
0028181441
-
Hidden markov models in computational biology: Applications to protein modeling
-
Krogh, A., Brown, M., Mian, I. S., Sjolander, K. & Haussler, D. (1994) Hidden markov models in computational biology: Applications to protein modeling. J. Mol. Biol, 235, 1501-1531.
-
(1994)
J. Mol. Biol
, vol.235
, pp. 1501-1531
-
-
Krogh, A.1
Brown, M.2
Mian, I.S.3
Sjolander, K.4
Haussler, D.5
-
12
-
-
0029259085
-
Maximum Discrimination hidden Markov models of sequence consensus
-
Eddy, S. R., Mitchison, G. & Durbin, R. (1995) Maximum Discrimination hidden Markov models of sequence consensus. J. Comp. Biol., 2, 9-23.
-
(1995)
J. Comp. Biol.
, vol.2
, pp. 9-23
-
-
Eddy, S.R.1
Mitchison, G.2
Durbin, R.3
-
13
-
-
0027092799
-
Protein classification artificial neural system
-
Wu, C. H., Whitson G., McLarty, J., Ermongkonchai, A. & Chang, T. (1992) Protein classification artificial neural system. Prot. Sci., 1, 667-677.
-
(1992)
Prot. Sci.
, vol.1
, pp. 667-677
-
-
Wu, C.H.1
Whitson, G.2
McLarty, J.3
Ermongkonchai, A.4
Chang, T.5
-
14
-
-
0029884312
-
Gene classification artificial neural system
-
Wu, C. H. (1996) Gene Classification Artificial Neural System. Methods Enzymol., 266, 71-88.
-
(1996)
Methods Enzymol
, vol.266
, pp. 71-88
-
-
Wu, C.H.1
-
15
-
-
0029933832
-
Motif identification neural design for rapid and sensitive protein family search
-
Wu, C. H., Zhao, S., Chen, H. L., Lo, C. J. & McLarty, J. (1996) Motif identification neural design for rapid and sensitive protein family search. CABIOS, 12, 109-118.
-
(1996)
CABIOS
, vol.12
, pp. 109-118
-
-
Wu, C.H.1
Zhao, S.2
Chen, H.L.3
Lo, C.J.4
McLarty, J.5
-
16
-
-
0031841788
-
The PIR-international protein sequence database
-
Barker, W. C, J. S. Garavelli, D. H. Haft, L. T. Hunt, C. R. Marzec, B. C. Orcutt, G. Y. Srinivasarao, L.-S. L. Yeh, R. S. Ledley, H.-W. Mewes, F. Pfeiffer & A. Tsugita, . (1998) The PIR-international protein sequence database. Nuc. Acids Res., 26, 27-32.
-
(1998)
Nuc. Acids Res.
, vol.26
, pp. 27-32
-
-
Barker, W.C.1
Garavelli, J.S.2
Haft, D.H.3
Hunt, L.T.4
Marzec, C.R.5
Orcutt, B.C.6
Srinivasarao, G.Y.7
Yeh, L.-S.L.8
Ledley, R.S.9
Mewes, H.-W.10
Pfeiffer, F.11
Tsugita, A.12
-
17
-
-
0029934458
-
Superfamily classification in PIR-international protein sequence database
-
Barker, W. C, Pfeiffer, F. & George, D. (1996) Superfamily classification in PIR-international protein sequence database. Methods Enzymol., 266, 59-71.
-
(1996)
Methods Enzymol
, vol.266
, pp. 59-71
-
-
Barker, W.C.1
Pfeiffer, F.2
George, D.3
-
18
-
-
0030771126
-
The PROSITE database, its status in 1997
-
Bairoch, A., Bucher, P. & Hofmann, K. (1997) The PROSITE database, its status in 1997. Nuc. Acids Res., 25, 217-221.
-
(1997)
Nuc. Acids Res.
, vol.25
, pp. 217-221
-
-
Bairoch, A.1
Bucher, P.2
Hofmann, K.3
-
19
-
-
0031864543
-
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998
-
Bairoch, A. & Apweiler, R. (1998) The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998. Nuc. Acids Res., 26, 38-42.
-
(1998)
Nuc. Acids Res.
, vol.26
, pp. 38-42
-
-
Bairoch, A.1
Apweiler, R.2
-
20
-
-
0031839544
-
Superior performance in protein homology detection with the Blocks database servers
-
Henikoff, S., Pietrokovski, S. & Henikoff, J. G. (1998) Superior performance in protein homology detection with the Blocks database servers. Nuc. Acids Res., 26, 309-312.
-
(1998)
Nuc. Acids Res.
, vol.26
, pp. 309-312
-
-
Henikoff, S.1
Pietrokovski, S.2
Henikoff, J.G.3
-
21
-
-
0031813405
-
The PRINTS protein fingerprint database in its fifth year
-
Attwood, T. K., Beck, M. E., Flower, D. R., Scordis, P. & Selley, J. N. (1998) The PRINTS protein fingerprint database in its fifth year. Nuc. Acids Res., 26, 304-308.
-
(1998)
Nuc. Acids Res.
, vol.26
, pp. 304-308
-
-
Attwood, T.K.1
Beck, M.E.2
Flower, D.R.3
Scordis, P.4
Selley, J.N.5
-
22
-
-
0031812904
-
The ProDom database of protein domain families
-
Corpet, F., Gouzy, J. & Kahn, D. (1998). The ProDom database of protein domain families. Nuc. Acids Res., 26, 323-326.
-
(1998)
Nuc. Acids Res.
, vol.26
, pp. 323-326
-
-
Corpet, F.1
Gouzy, J.2
Kahn, D.3
-
23
-
-
0031813130
-
Pfam: Multiple sequence alignments and HMM-profiles of protein domains
-
Sonnhammer, E. L. L., Eddy, S. R., Birney, E., Bateman, A. & Durbin, R. (1998) Pfam: Multiple sequence alignments and HMM-profiles of protein domains. Nuc. Acids Res., 26, 320-322.
-
(1998)
Nuc. Acids Res.
, vol.26
, pp. 320-322
-
-
Sonnhammer, E.L.L.1
Eddy, S.R.2
Birney, E.3
Bateman, A.4
Durbin, R.5
-
24
-
-
0030498354
-
A protein class database organized with ProSite protein groups and PIR superfamilies
-
Wu, C. H., Zhao, S. & Chen, H. L. (1996) A protein class database organized with ProSite protein groups and PIR superfamilies. J. Comp. Biol., 3, 547-562.
-
(1996)
J. Comp. Biol.
, vol.3
, pp. 547-562
-
-
Wu, C.H.1
Zhao, S.2
Chen, H.L.3
-
25
-
-
0031623251
-
ProClass protein family database: New version with motif alignments
-
R. B. Altman, A. K. Dunker, L. Hunter & T. E. Klein World Scientific Publishing
-
Wu, C. H. & Shivakumar, S. (1998) ProClass protein family database: New version with motif alignments. Proc. Pacific Symp. Biocomp. '98, eds., R. B. Altman, A. K. Dunker, L. Hunter & T. E. Klein, World Scientific Publishing, pp. 719-730.
-
(1998)
Proc. Pacific Symp. Biocomp
, vol.98
, pp. 719-730
-
-
Wu, C.H.1
Shivakumar, S.2
-
26
-
-
0025950944
-
Searching protein sequence libraries: Comparison of the sensitivity and the selectivity of the Smith-Waterman and FASTA algorithms
-
Pearson, W. R. (1991) Searching protein sequence libraries: Comparison of the sensitivity and the selectivity of the Smith-Waterman and FASTA algorithms. Genomics, 11, 635-650.
-
(1991)
Genomics
, vol.11
, pp. 635-650
-
-
Pearson, W.R.1
-
27
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting position specific gap penalties and weight matrix choice
-
Thompson, J.D., Higgins, D.G. & Gibson, T.J. (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nuc. Acids Res., 22, 4673-4680.
-
(1994)
Nuc. Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
28
-
-
13144274502
-
Protein family identification and information retrieval using a ProClass database and a motif neural design
-
In Press
-
Wu, C. H., Shivakumar, S. & Barker, W.C. (1997). Protein family identification and information retrieval using a ProClass database and a motif neural design. Math. Model. Sci. Comp., 8, (In Press).
-
(1997)
Math. Model. Sci. Comp.
, Issue.8
-
-
Wu, C.H.1
Shivakumar, S.2
Barker, W.C.3
-
29
-
-
0031827396
-
GeneFIND web server for protein family identification and information retrieval
-
In Press
-
Wu, C. H., Shivakumar, S., Shivakumar, C. V. & Chen S. (1998) GeneFIND web server for protein family identification and information retrieval. Bioinformatics, 14, (In Press).
-
(1998)
Bioinformatics
, pp. 14
-
-
Wu, C.H.1
Shivakumar, S.2
Shivakumar, C.V.3
Chen, S.4
|