Combining terminology resources and statistical methods for entity recognition: An evaluation

Proceedings of the 6th International Conference on Language Resources and Evaluation, LREC 2008

Volumn , Issue , 2008, Pages 2974-2980

  Roberts, Angus ^a   Gaizauskas, Robert ^a   Hepple, Mark ^a   Guo, Yikun ^a  

^a UNIVERSITY OF SHEFFIELD   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

STATISTICAL METHODS;

ADDITIONAL KNOWLEDGE; BIOMEDICAL DOMAIN; COMBINED METHOD; DOMAIN KNOWLEDGE; ENTITY RECOGNITION; INFORMATICS; KNOWLEDGE RESOURCE; LOOKUPS;

TERMINOLOGY;

EID: 85034105212     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (21)

1. S. Ananiadou and G. Nenadic. 2006. Automatic terminology management in biomedicine. In S. Ananiadou and J. McNaught, editors, Text Mining for Biology and Biomedicine, chapter 4, pages 67-97. Artech House.
2. A. Aronson. 2005. Filtering the umls metathesaurus for metamap. Technical report, U. S National Library of Medicine, Lister Hill National Center for Biomedical Communications, Cognitive Science Branch.
3. H. Cunningham, D. Maynard, K. Bontcheva, and V. Tablan. 2002. GATE: A Framework and Graphical Development Environment for Robust NLP Tools and Applications. In Proceedings of the 40th Anniversary Meeting of the Association for Computational Linguistics, pages 168-175, Philadelphia, PA, USA.
4. H. Harkema, R. Gaizauskas, M. Hepple, N. Davis, Y. Guo, A. Roberts, and I. Roberts. 2004. A Large-Scale Resource for Storing and Recognizing Technical Terminology. In Proceedings of 4th International Conference on Language Resources and Evaluation, pages 83-86, Lisbon, Portugal.
5. L. Hirschman, A. Morgan, and A. Yeh. 2002. Rutabaga by any other name: extracting biological names. Journal of Biomedical Informatics, 35(4):247-259.
6. G. Hripcsak and A. Rothschild. 2005. Agreement, F-measure and reliability in information retrieval. Journal of the American Medical Informatics Association, 12(3):296-298.
7. Y. Li, K. Bontcheva, and H. Cunningham. 2005. SVM based learning system for information extraction. In Deterministic and statistical methods in machine learning: first international workshop, number 3635 in Lecture Notes in Computer Science, pages 319-339. Springer.
8. D. Lindberg, B. Humphreys, and A. McCray. 1993. The Unified Medical Language System. Methods of Information in Medicine, 32(4):281-291.
9. A. McCray, O. Bodenreider, J. Malley, and A. Browne. 2001. Evaluating UMLS Strings for Natural Language Processing. In Proceedings of the 2001 American Medical Informatics Association Annual Symposium, pages 448-452, Portland, OR, USA.
10. A. McCray, A. Browne, and O. Bodenreider. 2002. The lexical properties of the gene ontology (go). In Proceedings of the 2002 American Medical Informatics Association Annual Symposium, pages 504-508, San Antonio, TX, USA.
11. S. Mika and B. Rost. 2004. Protein names precisely peeled off free text. Bioinformatics, 20(Supplement 1):i241-i247.
12. A. Mikheev, M. Moens, and C. Grover. 1999. Named Entity recognition without gazetteers. In Proceedings of the ninth conference of the European chapter of the Association for Computational Linguistics (EACL'99), pages 1-8, Bergen, Norway.
13. S. Pakhomov, J. Buntrock, and P. Duffy. 2005. High throughput modularized NLP system for clinical text. In Proceedings of the 43rd Annual Meeting of the Association for Computational Linguistics (ACL'05), interactive poster and demonstration sessions, pages 25-28, Ann Arbor, MI, USA.
14. J. Park and J. Kim. 2006. Named entity recognition. In S. Ananiadou and J. McNaught, editors, Text Mining for Biology and Biomedicine, chapter 6, pages 121-142. Artech House.
15. D. Proux, F. Rechenmann, L. Julliard, V. Pillet, and B. Jacq. 1998. Detecting gene symbols and names in biological texts: a first step toward pertinent information extraction. Genome Informatics, 9:72-80.
16. A. Rector, J. Rogers, A. Taweel, D. Ingram, D. Kalra, J. Milan, P. Singleton, R. Gaizauskas, M. Hepple, D. Scott, and R. Power. 2003. CLEF - Joining up Healthcare with Clinical and Post-Genomic Research. In Proceedings of UK e-Science All Hands Meeting 2003, pages 264-267, Nottingham, UK.
17. A. Roberts, R. Gaizauskas, M. Hepple, N. Davis, G. Demetriou, Y. Guo, J. Kola, I. Roberts, A. Setzer, A. Tapuria, and B. Wheeldin. 2007. The CLEF Corpus: Semantic Annotation of Clinical Text. In Proceedings of the 2007 American Medical Informatics Association Annual Symposium, pages 625-629, Chicago, IL, USA.
18. M. Schuemie, J. Kors, and B. Mons. 2005. Word sense disambiguation in the biomedical domain: An overview. Journal of Computational Biology, 12(5):554-565.
19. M. Stevenson and R. Gaizauskas. 2000. Using Corpusderived Name Lists for Named Entity Recognition. In Proceedings of the Sixth Conference on Applied Natural Language Processing (ANLP-2000), pages 84-89, Seattle, Washington, USA.
20. L. Tanabe and W. Wilbur. 2002. Tagging gene and protein names in biomedical text. Bioinformatics, 18(8):1124-1132.
21. K. Yamamoto, T. Kudo, A. Konagaya, and Y. Matsumoto. 2003. Protein name tagging for biomedical annotation in text. In Proceedings of the ACL 2003 Workshop on Natural Language Processing in Biomedicine, pages 65-72, Sapporo, Japan.