Population structure of peronospora effusa in the southwestern United States

PLoS ONE

Volumn 11, Issue 2, 2016, Pages

  Lyon, Rebecca ^a   Correll, James ^b   Feng, Chunda ^b   Bluhm, Burt ^b   Shrestha, Sandesh ^a   Shi, Ainong ^b   Lamour, Kurt ^a  

^a UNIVERSITY OF TENNESSEE   (United States)

^b UNIVERSITY OF ARKANSAS   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA;

ARTICLE; ASEXUAL REPRODUCTION; CONTROLLED STUDY; CROP PRODUCTION; DNA EXTRACTION; DOWNY MILDEW; FUNGAL COMMUNITY; FUNGUS ISOLATION; GENE CLUSTER; GENETIC RECOMBINATION; GENETIC VARIABILITY; GENOTYPE; NONHUMAN; PERONOSPORA; PERONOSPORA EFFUSA; PLANT TISSUE; POPULATION STRUCTURE; SEQUENCE ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; UNITED STATES; GENETICS; PHYSIOLOGY; PRINCIPAL COMPONENT ANALYSIS; PROBABILITY; REPRODUCIBILITY;

GENOTYPE; PERONOSPORA; PRINCIPAL COMPONENT ANALYSIS; PROBABILITY; REPRODUCIBILITY OF RESULTS; SOUTHWESTERN UNITED STATES;

EID: 85031964543     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0148402     Document Type: Article

References (27)

1. Brandenberger LP, Morelock TE, Correll JC (1992) Evaluation of spinach germplasm for resistance to a new race (Race 4) of Peronospora farinosa f. sp. spinaciae. Hortscience 27: 1118-1119.
2. Correll JC, Morelock TE, Black MC, Koike ST, Brandenberger LP, Dainello FJ (1994) Economically important diseases of spinach. Plant Disease 78: 653-660.
3. Choi YJ, Hong SB, Shin HD (2007) Re-consideration of Peronospora farinosa infecting Spinacia oleracea as distinct species, Peronospora effusa. Mycological Research 111: 381-391. PMID: 17509849 4. (2014) Food and Agriculture Organization of the United Nations: FAOSTAT
4. Irish BM, Correll JC, Koike ST, Morelock TE (2007) Three new races of the spinach downy mildew pathogen identified by a modified set of spinach differentials. Plant Disease 91: 1392-1396.
5. Feng C, Mansouri S, Bluhm BH, du Toit LJ, Correll JC (2014) Multiplex real- time PCR assays for detection of four seedborne spinach pathogens. Journal of Applied Microbiology.
6. Lucier G (2004) Factors affecting spinach consumption in the United States. In: United States. Dept. of Agriculture. Economic Research S, United States. Dept. of Agriculture. Office of Economics. Economic Research S, E.R.S, editors. Electronic outlook report from the Economic Research Service. Washington, D.C.]: Washington, D.C.: U.S. Dept. of Agriculture.
7. Correll JC, Bluhm BH, Feng C, Lamour K, du Toit LJ, Koike ST. (2011) Spinach: better management of downy mildew and white rust through genomics. Eur J Plant Pathol 129: 193-205.
8. Foss CRJ, L.J (2005) Crop profile for spinach seed in Washington.
9. Inaba T (1983) Seed transmission of spinach downy mildew. Plant Disease 67: 1139.
10. Correll JC, Koike ST, Brandenberger LP, Black MC, Morelock TE (1990) A new race of downy mildew threatens spinach. California Agriculture 44: 14-15.
11. Irish BM, Correll JC, Koike ST, Schafer J, Morelock TE (2003) Identification and cultivar reaction to three new races of the spinach downy mildew pathogen from the United States and Europe. Plant Disease 87: 567-572.
12. Feng C, Correll JC, Kammeijer KE, Koike ST (2014) Identification of new races and deviating strains of the spinach downy mildew pathogen Peronospora farinosa f. sp. spinaciae. Plant Disease 98: 145-152.
13. Eenink A (1976) Linkage in Spinacia oleracea L. of two race- specific genes for resistance to downy mildew Peronospora farinosa f. sp. spinaciae. International Journal of Plant Breeding 25: 713-715.
14. Brandenberger LP, Correll JC, Morelock TE (1991) Identification of and cultivar reactions to a new race (Race- 4) of Peronospora farinosa f. sp. spinaciae on spinach in the United States. Plant Disease 75: 630-634.
15. Satou M, Nishi K, Kubota M, Fukami M, Tsuji H, Ettekoven KV (2006) Appearance of race Pfs: 5 of spinach downy mildew fungus, Peronospora farinosa f. sp. spinaciae, in Japan. J Gen Pl Path 72: 193-194.
16. Choi YJ, Thines M, Han JG, Shin HD (2011) Mitochondrial phylogeny reveals intraspecific variation in Peronospora effusa, the spinach downy mildew pathogen. J Microbiol 49: 1039-1043. doi: 10.1007/ s12275-011-1069-2 PMID: 22203571
17. Lamour K, Finley L (2006) A strategy for recovering high quality genomic DNA from a large number of Phytophthora isolates. Mycologia 98: 514-517. PMID: 17040080
18. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959. PMID: 10835412
19. Rosenberg NA (2004) DISTRUCT: a program for the graphical display of population structure. Mol Ecol Notes 4: 137-138.
20. Earl DA, vonHoldt BM (2012) STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conservation Genetics Resources 4: 359-361.
21. Excoffier L, Lischer HEL (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10: 564-567. doi: 10.1111/j.1755-0998.2010.02847.x PMID: 21565059
22. Peakall R, Smouse PE (2012) GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research-an update. Bioinformatics 28: 2537-2539. PMID: 22820204
23. Peakall R, Smouse PE (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6: 288-295.
24. Liu K, Muse SV (2005) PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics 21: 2128-2129. PMID: 15705655
25. Yeh FC, Boyle TJB (1997) Population genetic analysis of co-dominant and dominant markers and quantitative traits. Belgian Journal of Botany 129: 157.
26. Hu J, Diao Y, Zhou Y, Lin D, Bi Y, Pang Z, et al. (2013) Loss of heterozygosity drives clonal diversity of Phytophthora capsici in China. Plos One 8.
27. Lamour K, Mudge J, Gobena D, Hurtado-Gonzalez O, Shmutz J, Kuo A, et al. (2012) Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen Phytophthora capsici. Molecular Plant Microbe Interactions 25: 1350-1360. doi: 10. 1094/MPMI-02-12-0028-R PMID: 22712506