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Volumn 14, Issue 11, 2017, Pages 1646-1654

Usual interstitial pneumonia can be detected in transbronchial biopsies using machine learning

Author keywords

Idiopathic pulmonary fibrosis; Interstitial lung diseases; Molecular diagnostics

Indexed keywords

ADULT; AGED; AREA UNDER THE CURVE; ARTICLE; CLASSIFIER; DIAGNOSTIC ACCURACY; EXOME; FEMALE; GENE EXPRESSION; HUMAN; HUMAN TISSUE; INTERSTITIAL PNEUMONIA; LUNG BIOPSY; LUNG PARENCHYMA; MAJOR CLINICAL STUDY; MALE; MOLECULAR DIAGNOSIS; RECEIVER OPERATING CHARACTERISTIC; RNA EXTRACTION; RNA SEQUENCE; SENSITIVITY AND SPECIFICITY; TRANSBRONCHIAL BIOPSY; ADOLESCENT; BIOPSY; COHORT ANALYSIS; DIFFERENTIAL DIAGNOSIS; FIBROSING ALVEOLITIS; LUNG; MACHINE LEARNING; MIDDLE AGED; PATHOLOGY; PROCEDURES; SEQUENCE ANALYSIS; STATISTICAL MODEL; VERY ELDERLY; X-RAY COMPUTED TOMOGRAPHY; YOUNG ADULT;

EID: 85031936279     PISSN: 23256621     EISSN: None     Source Type: Journal    
DOI: 10.1513/AnnalsATS.201612-947OC     Document Type: Article
Times cited : (82)

References (38)
  • 1
    • 84881669432 scopus 로고    scopus 로고
    • ATS/ERS Committee on Idiopathic Interstitial Pneumonias. An official American Thoracic Society/European Respiratory Society statement: Update of the international multidisciplinary classification of the idiopathic interstitial pneumonias
    • TravisWD, Costabel U, Hansell DM, King TE Jr, Lynch DA, Nicholson AG, Ryerson CJ, Ryu JH, Selman M, Wells AU, et al.; ATS/ERS Committee on Idiopathic Interstitial Pneumonias. An official American Thoracic Society/European Respiratory Society statement: update of the international multidisciplinary classification of the idiopathic interstitial pneumonias. Am J Respir Crit Care Med 2013;188: 733-748.
    • (2013) Am J Respir Crit Care Med , vol.188 , pp. 733-748
    • Travis, W.D.1    Costabel, U.2    Hansell, D.M.3    King, T.E.4    Lynch, D.A.5    Nicholson, A.G.6    Ryerson, C.J.7    Ryu, J.H.8    Selman, M.9    Wells, A.U.10
  • 2
    • 84938125365 scopus 로고    scopus 로고
    • American Thoracic Society; European Respiratory society; Japanese Respiratory Society; Latin American Thoracic Association. An official ATS/ERS/JRS/ALAT clinical practice guideline: Treatment of idiopathic pulmonary fibrosis: An update of the 2011 clinical practice guideline
    • [Published erratum appears in Am J Respir Crit Care Med 192:644. ]
    • Raghu G, Rochwerg B, Zhang Y, Garcia CAC, Azuma A, Behr J, Brozek JL, Collard HR, Cunningham W, Homma S, et al.; American Thoracic Society; European Respiratory society; Japanese Respiratory Society; Latin American Thoracic Association. An official ATS/ERS/JRS/ALAT clinical practice guideline: treatment of idiopathic pulmonary fibrosis: an update of the 2011 clinical practice guideline. Am J Respir Crit Care Med 2015;192:e3-e19. [Published erratum appears in Am J Respir Crit Care Med 192:644. ]
    • (2015) Am J Respir Crit Care Med , vol.192 , pp. e3-e19
    • Raghu, G.1    Rochwerg, B.2    Zhang, Y.3    Garcia, C.A.C.4    Azuma, A.5    Behr, J.6    Brozek, J.L.7    Collard, H.R.8    Cunningham, W.9    Homma, S.10
  • 7
    • 48949091397 scopus 로고    scopus 로고
    • Diagnosis of usual interstitial pneumonia and distinction from other fibrosing interstitial lung diseases
    • Katzenstein AL, Mukhopadhyay S, Myers JL. Diagnosis of usual interstitial pneumonia and distinction from other fibrosing interstitial lung diseases. Hum Pathol 2008;39:1275-1294.
    • (2008) Hum Pathol , vol.39 , pp. 1275-1294
    • Katzenstein, A.L.1    Mukhopadhyay, S.2    Myers, J.L.3
  • 8
    • 79952717349 scopus 로고    scopus 로고
    • ATS/ERS/JRS/ALAT Committee on Idiopathic Pulmonary Fibrosis. An official ATS/ERS/ JRS/ALAT statement: Idiopathic pulmonary fibrosis: Evidence-based guidelines for diagnosis and management
    • Raghu G, Collard HR, Egan JJ, Martinez FJ, Behr J, Brown KK, Colby TV, Cordier J-F, Flaherty KR, Lasky JA, et al.; ATS/ERS/JRS/ALAT Committee on Idiopathic Pulmonary Fibrosis. An official ATS/ERS/ JRS/ALAT statement: idiopathic pulmonary fibrosis: evidence-based guidelines for diagnosis and management. Am J Respir Crit Care Med 2011;183:788-824.
    • (2011) Am J Respir Crit Care Med , vol.183 , pp. 788-824
    • Raghu, G.1    Collard, H.R.2    Egan, J.J.3    Martinez, F.J.4    Behr, J.5    Brown, K.K.6    Colby, T.V.7    Cordier, J.-F.8    Flaherty, K.R.9    Lasky, J.A.10
  • 9
    • 0037080547 scopus 로고    scopus 로고
    • American Thoracic Society; European Respiratory Society. This joint statement of the American Thoracic Society (ATS), and the European Respiratory Society (ERS) was adopted by the ATS board of directors, June 2001 and by the ERS executive committee, June 2001. Am J Respir Crit Care Med
    • American Thoracic Society; European Respiratory Society. American Thoracic Society/European Respiratory Society international multidisciplinary consensus classification of the idiopathic interstitial pneumonias. This joint statement of the American Thoracic Society (ATS), and the European Respiratory Society (ERS) was adopted by the ATS board of directors, June 2001 and by the ERS executive committee, June 2001. Am J Respir Crit Care Med 2002;165: 277-304.
    • (2002) American Thoracic Society/European Respiratory Society International Multidisciplinary Consensus Classification of the Idiopathic Interstitial Pneumonias , vol.165 , pp. 277-304
  • 10
    • 0031965748 scopus 로고    scopus 로고
    • Idiopathic pulmonary fibrosis: Clinical relevance of pathologic classification
    • Katzenstein A-LA, Myers JL. Idiopathic pulmonary fibrosis: clinical relevance of pathologic classification. Am J Respir Crit Care Med 1998;157:1301-1315.
    • (1998) Am J Respir Crit Care Med , vol.157 , pp. 1301-1315
    • Katzenstein, A.-L.A.1    Myers, J.L.2
  • 13
    • 77951918393 scopus 로고    scopus 로고
    • Histopathologic findings of transbronchial biopsy in usual interstitial pneumonia
    • Shim HS, Park MS, Park IK. Histopathologic findings of transbronchial biopsy in usual interstitial pneumonia. Pathol Int 2010;60:373-377.
    • (2010) Pathol Int , vol.60 , pp. 373-377
    • Shim, H.S.1    Park, M.S.2    Park, I.K.3
  • 15
    • 84974623487 scopus 로고    scopus 로고
    • Diagnostic yield and safety of cryoprobe transbronchial lung biopsy in diffuse parenchymal lung diseases: Systematic review and meta-analysis
    • Dhooria S, Sehgal IS, Aggarwal AN, Behera D, Agarwal R. Diagnostic yield and safety of cryoprobe transbronchial lung biopsy in diffuse parenchymal lung diseases: systematic review and meta-analysis. Respir Care 2016;61:700-712.
    • (2016) Respir Care , vol.61 , pp. 700-712
    • Dhooria, S.1    Sehgal, I.S.2    Aggarwal, A.N.3    Behera, D.4    Agarwal, R.5
  • 17
    • 85032804121 scopus 로고    scopus 로고
    • Bridging the gap between HRCT and final IPF diagnosis: Classifying the usual interstitial pneumonia pattern in transbronchial biopsies using machine learning on high dimensional genomic data [abstract]
    • Kennedy GC, Pankratz DG, Choi Y, Colby T, Myers JL, Brown KK, Flaherty K, Lynch DA, Steele MP, Imtiaz U, et al. Bridging the gap between HRCT and final IPF diagnosis: classifying the usual interstitial pneumonia pattern in transbronchial biopsies using machine learning on high dimensional genomic data [abstract]. Am J Respir Crit Care Med 2016;193:A2380.
    • (2016) Am J Respir Crit Care Med , vol.193 , pp. A2380
    • Kennedy, G.C.1    Pankratz, D.G.2    Choi, Y.3    Colby, T.4    Myers, J.L.5    Brown, K.K.6    Flaherty, K.7    Lynch, D.A.8    Steele, M.P.9    Imtiaz, U.10
  • 18
    • 85032811519 scopus 로고    scopus 로고
    • Diagnosis of idiopathic pulmonary fibrosis: Accurate molecular detection of usual interstitital pneumonia pattern in transbronchial biopsies using RNA sequencing [abstract]
    • Martinez FJ, Flaherty KR, Brown KK, Colby TV, Groshong SD, Myers JL, Lynch DA, Steele MP, Huang J, Choi Y, et al. Diagnosis of idiopathic pulmonary fibrosis: accurate molecular detection of usual interstitital pneumonia pattern in transbronchial biopsies using RNA sequencing [abstract]. QJM 2016:109(suppl-1):S8.
    • (2016) QJM , vol.109 , pp. S8
    • Martinez, F.J.1    Flaherty, K.R.2    Brown, K.K.3    Colby, T.V.4    Groshong, S.D.5    Myers, J.L.6    Lynch, D.A.7    Steele, M.P.8    Huang, J.9    Choi, Y.10
  • 19
    • 84930871576 scopus 로고    scopus 로고
    • Classification of usual interstitial pneumonia in patients with interstitial lung disease: Assessment of a machine learning approach using high-dimensional transcriptional data
    • Kim SY, Diggans J, Pankratz D, Huang J, Pagan M, Sindy N, Tom E, Anderson J, Choi Y, Lynch DA, et al. Classification of usual interstitial pneumonia in patients with interstitial lung disease: assessment of a machine learning approach using high-dimensional transcriptional data. Lancet Respir Med 2015;3:473-482.
    • (2015) Lancet Respir Med , vol.3 , pp. 473-482
    • Kim, S.Y.1    Diggans, J.2    Pankratz, D.3    Huang, J.4    Pagan, M.5    Sindy, N.6    Tom, E.7    Anderson, J.8    Choi, Y.9    Lynch, D.A.10
  • 20
    • 77950537175 scopus 로고    scopus 로고
    • Regularization paths for generalized linear models via coordinate descent
    • Friedman J, Hastie T, Tibshirani R. Regularization paths for generalized linear models via coordinate descent. J Stat Softw 2010;33:1-22.
    • (2010) J Stat Softw , vol.33 , pp. 1-22
    • Friedman, J.1    Hastie, T.2    Tibshirani, R.3
  • 21
    • 84924629414 scopus 로고    scopus 로고
    • Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
    • Love MI, Huber W, Anders S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol 2014;15: 550.
    • (2014) Genome Biol , vol.15 , pp. 550
    • Love, M.I.1    Huber, W.2    Anders, S.3
  • 24
    • 47549092809 scopus 로고    scopus 로고
    • Role of surgical lung biopsy in separating chronic hypersensitivity pneumonia from usual interstitial pneumonia/idiopathic pulmonary fibrosis: Analysis of 31 biopsies from 15 patients
    • Trahan S, Hanak V, Ryu JH, Myers JL. Role of surgical lung biopsy in separating chronic hypersensitivity pneumonia from usual interstitial pneumonia/idiopathic pulmonary fibrosis: analysis of 31 biopsies from 15 patients. Chest 2008;134:126-132.
    • (2008) Chest , vol.134 , pp. 126-132
    • Trahan, S.1    Hanak, V.2    Ryu, J.H.3    Myers, J.L.4
  • 25
    • 62449233510 scopus 로고    scopus 로고
    • Histopathologic analysis of sixteen autopsy cases of chronic hypersensitivity pneumonitis and comparison with idiopathic pulmonary fibrosis/usual interstitial pneumonia
    • Akashi T, Takemura T, Ando N, Eishi Y, Kitagawa M, Takizawa T, Koike M, Ohtani Y, Miyazaki Y, Inase N, et al. Histopathologic analysis of sixteen autopsy cases of chronic hypersensitivity pneumonitis and comparison with idiopathic pulmonary fibrosis/usual interstitial pneumonia. Am J Clin Pathol 2009;131:405-415.
    • (2009) Am J Clin Pathol , vol.131 , pp. 405-415
    • Akashi, T.1    Takemura, T.2    Ando, N.3    Eishi, Y.4    Kitagawa, M.5    Takizawa, T.6    Koike, M.7    Ohtani, Y.8    Miyazaki, Y.9    Inase, N.10
  • 28
    • 84901022861 scopus 로고    scopus 로고
    • Revealing the pathogenic and aging-related mechanisms of the enigmatic idiopathic pulmonary fibrosis: An integral model
    • Selman M, Pardo A. Revealing the pathogenic and aging-related mechanisms of the enigmatic idiopathic pulmonary fibrosis: an integral model. Am J Respir Crit Care Med 2014;189:1161-1172.
    • (2014) Am J Respir Crit Care Med , vol.189 , pp. 1161-1172
    • Selman, M.1    Pardo, A.2
  • 32
    • 84998814253 scopus 로고    scopus 로고
    • Plasma surfactant protein-D, matrix metalloproteinase-7, and osteopontin index distinguishes idiopathic pulmonary fibrosis from other idiopathic interstitial pneumonias
    • White ES, Xia M, Murray S, Dyal R, Flaherty CM, Flaherty KR, Moore BB, Cheng L, Doyle TJ, Villalba J, et al. Plasma surfactant protein-D, matrix metalloproteinase-7, and osteopontin index distinguishes idiopathic pulmonary fibrosis from other idiopathic interstitial pneumonias. Am J Respir Crit Care Med 2016;194:1242-1251.
    • (2016) Am J Respir Crit Care Med , vol.194 , pp. 1242-1251
    • White, E.S.1    Xia, M.2    Murray, S.3    Dyal, R.4    Flaherty, C.M.5    Flaherty, K.R.6    Moore, B.B.7    Cheng, L.8    Doyle, T.J.9    Villalba, J.10
  • 35
    • 0032725125 scopus 로고    scopus 로고
    • The accuracy of the clinical diagnosis of new-onset idiopathic pulmonary fibrosis and other interstitial lung disease: A prospective study
    • Raghu G, Mageto YN, Lockhart D, Schmidt RA, Wood DE, Godwin JD. The accuracy of the clinical diagnosis of new-onset idiopathic pulmonary fibrosis and other interstitial lung disease: a prospective study. Chest 1999;116:1168-1174.
    • (1999) Chest , vol.116 , pp. 1168-1174
    • Raghu, G.1    Mageto, Y.N.2    Lockhart, D.3    Schmidt, R.A.4    Wood, D.E.5    Godwin, J.D.6
  • 38
    • 84951570581 scopus 로고    scopus 로고
    • Diagnostic certainty of idiopathic pulmonary fibrosis/usual interstitial pneumonia: The effect of the integrated clinico-radiological assessment
    • Tominaga J, Sakai F, Johkoh T, Noma S, Akira M, Fujimoto K, Colby TV, Ogura T, Inoue Y, Taniguchi H, et al. Diagnostic certainty of idiopathic pulmonary fibrosis/usual interstitial pneumonia: the effect of the integrated clinico-radiological assessment. Eur J Radiol 2015;84: 2640-2645.
    • (2015) Eur J Radiol , vol.84 , pp. 2640-2645
    • Tominaga, J.1    Sakai, F.2    Johkoh, T.3    Noma, S.4    Akira, M.5    Fujimoto, K.6    Colby, T.V.7    Ogura, T.8    Inoue, Y.9    Taniguchi, H.10


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