Wheat Ms2 encodes for an orphan protein that confers male sterility in grass species

Nature Communications

Volumn 8, Issue , 2017, Pages

  Ni, Fei ^a   Qi, Juan ^a   Hao, Qunqun ^a   Lyu, Bo ^a   Luo, Ming Cheng ^b   Wang, Yan ^a   Chen, Fengjuan ^a   Wang, Shuyun ^a   Zhang, Chaozhong ^a   Epstein, Lynn ^b   Zhao, Xiangyu ^a   Wang, Honggang ^a   Zhang, Xiansheng ^a   Chen, Cuixia ^a   Sun, Lanzhen ^a   Fu, Daolin ^a,c  

^a SHANDONG AGRICULTURAL UNIVERSITY   (China)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF IDAHO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTOME; PLANT PROTEIN;

BARLEY; CULTIVAR; GENE; GENE EXPRESSION; GRASS; HYBRID; PLANT BREEDING; PROTEIN; SEED PRODUCTION; STERILITY; WHEAT;

ARTICLE; BARLEY; BRACHYPODIUM; CONTROLLED STUDY; FOOD SECURITY; GENE EXPRESSION; GRASS; HYBRID SEED PRODUCTION; MALE; MALE STERILITY; MOLECULAR CLONING; MS2 GENE; NONHUMAN; PLANT BREEDING; PLANT GENE; PROMOTER REGION; RECURRENT SELECTION; TRANSCRIPTOMICS; TRITICUM AESTIVUM; CATERING SERVICE; FLOWER; GENETICS; HORDEUM; METABOLISM; PLANT INFERTILITY; PROTEIN ANALYSIS; RETROPOSON; WHEAT;

CHINA;

BRACHYPODIUM; HORDEUM; TRITICUM AESTIVUM;

BRACHYPODIUM; CLONING, MOLECULAR; FLOWERS; FOOD SUPPLY; HORDEUM; PLANT BREEDING; PLANT INFERTILITY; PLANT PROTEINS; PROMOTER REGIONS, GENETIC; PROTEIN INTERACTION MAPS; RETROELEMENTS; TRANSCRIPTOME; TRITICUM;

EID: 85031120857     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms15121     Document Type: Article

References (61)

1. United-Nations. World Population Prospects: The 2015 Revision, Key Findings and Advance Tables (Department of Economic and Social Affairs-Population Division, United Nations, 2015).
2. Pingali, P. L. Green revolution: Impacts, limits, and the path ahead. Proc. Natl Acad. Sci. USA 109, 12302-12308 (2012).
3. Fu, D. et al. Utilization of crop heterosis: a review. Euphytica 197, 161-173 (2014).
4. FAOSTAT. FAO Statistical Pocketbook 2015: World Food and Agriculture (Food and Agriculture Organization of the United Nations, 2015).
5. Kaul, M. L. H. (ed.) Male Sterility in Higher Plants 1005 (Springer-Verlag, 1988).
6. Chen, L. & Liu, Y.-G. Male sterility and fertility restoration in crops. Annu. Rev. Plant Biol. 65, 579-606 (2014).
7. Ma, G.H. & Yuan, L.P. Hybrid rice achievements, development and prospect in China. J. Integr. Agric 14, 197-205 (2015).
8. Chang, Z. et al. Construction of a male sterility system for hybrid rice breeding and seed production using a nuclear male sterility gene. Proc. Natl Acad. Sci. USA 113, 14145-14150 (2016).
9. Wu, Y. et al. Development of a novel recessive genetic male sterility system for hybrid seed production in maize and other cross-pollinating crops. Plant Biotechnol. J. 14, 1046-1054 (2016).
10. Longin, C. et al. Hybrid breeding in autogamous cereals. Theor. Appl. Genet. 125, 1087-1096 (2012).
11. Singh, S. P., Srivastava, R. & Kumar, J. Male sterility systems in wheat and opportunities for hybrid wheat development. Acta Physiol. Plant. 37, 1713 (2015).
12. Adugna, A., Nanda, G. S., Singh, K. & Bains, N. S. A comparison of cytoplasmic and chemically-induced male sterility systems for hybrid seed production in wheat (Triticum aestivum L.). Euphytica 135, 297-304 (2004).
13. McIntosh, R. A. et al. in The 12th International Wheat Genetics Symposium (Yokohama, 2013).
14. Liu, B. & Deng, J. A dominant gene for male sterility in wheat. Plant Breed. 97, 204-209 (1986).
15. Deng, J. & Gao, Z. The use of a dominant male-sterile gene in wheat breeding. Acta Agron. Sin. 6, 85-98 (1980).
16. Zhang, Y., Deng, J. & Ji, F. A study for stability of male sterility of Taigu genic male sterile wheat. Shanxi Agric. Sci. 6, 5-8 (1987).
17. Deng, J. & Gao, Z. Discovery and determination of a dominant male-sterile gene and its importance in genetics and wheat breeding. Sci. Sin. (Ser. B) 25, 508-516 (1982).
18. Ji, F. et al. A report on the breeding of dominant male-sterile durum (T. durum) and bearded wheat (T. dicoccum). Sci. Agric. Sin. 29, 23-27 (1996).
19. Ji, F. & Deng, J. Further study on the inheritance of the genic male-sterile wheat of taigu and the production of the dominant male-sterile octoploid triticale. Sci. China Chem. 28, 608-617 (1985).
20. Ji, F. & Deng, J. Utilization of the dominant male-sterile gene Ta1 in Triticale breeding program II. Production and utilization of dominant male-sterile octoploid Triticale. Hereditas 8, 15-18 (1986).
21. Ji, F., Deng, J., Li, S. & Cheng, C. A primary report on breeding of dominant male-sterile hexaploid Triticale. Hereditas 11, 1-4 (1989).
22. Sorrells, M. E. & Fritz, S. E. Application of a dominant male-sterile allele to the improvement of self-pollinated crops. Crop Sci. 22, 1033-1035 (1982).
23. Liu, B. & Yang, L. Breeding of dwarfing-sterile wheat and its potential values in wheat breeding. Chin. Sci. Bull. 36, 1562-1564 (1991).
24. Luo, M.-C. et al. A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor. Proc. Natl Acad. Sci. USA 110, 7940-7945 (2013).
25. Solovyev, V., Kosarev, P., Seledsov, I. & Vorobyev, D. Automatic annotation of eukaryotic genes, pseudogenes and promoters. Genome Biol. 7, S10-S10 (2006).
26. Middleton, C. P. et al. Sequencing of chloroplast genomes from wheat, barley, rye and their relatives provides a detailed insight into the evolution of the Triticeae tribe. PLoS ONE 9, e85761 (2014).
27. IWGSC. A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome. Science 345, 1251788 (2014).
28. Li, Y. et al. A tandem segmental duplication (TSD) in green revolution gene Rht-D1b region underlies plant height variation. New Phytol. 196, 282-291 (2012).
29. Qi, L. L. & Gill, B. S. High-density physical maps reveal that the dominant male-sterile gene Ms3 is located in a genomic region of low recombination in wheat and is not amenable to map-based cloning. Theor. Appl. Genet. 103, 998-1006 (2001).
30. Havecker, E. R., Gao, X. & Voytas, D. F. The diversity of LTR retrotransposons. Genome Biol. 5, 1-6 (2004).
31. Wicker, T., Matthews, D. E. & Keller, B. TREP: a database for Triticeae repetitive elements. Trends Plant Sci. 7, 561-562 (2002).
32. Butelli, E. et al. Retrotransposons control fruit-specific, cold-dependent accumulation of anthocyanins in blood oranges. Plant Cell 24, 1242-1255 (2012).
33. Hayashi, K. & Yoshida, H. Refunctionalization of the ancient rice blast disease resistance gene Pit by the recruitment of a retrotransposon as a promoter. Plant J. 57, 413-425 (2009).
34. Grandbastien, M.-A. LTR retrotransposons, handy hitchhikers of plant regulation and stress response. Biochim. Biophys. Acta Gene Regul. Mech. 1849, 403-416 (2015).
35. Yang, L. et al. in Induced Plant Mutations in The Genomics Era (ed. Shu, Q. Y.) 370-372 (Food and Agriculture Organization of the United Nations, 2009).
36. Papini, A., Mosti, S. & Brighigna, L. Programmed-cell-death events during tapetum development of angiosperms. Protoplasma 207, 213-221 (1999).
37. Zadoks, J. C., Chang, T. T. & Konzak, C. F. A decimal code for the growth stages of cereals. Weed Res. 14, 415-421 (1974).
38. Alexander, M. P. Differential staining of aborted and nonaborted pollen. Biotech. Histochem. 44, 117-122 (1969).
39. Chang, F., Zhang, Z., Jin, Y. & Ma, H. in Flower Development, Vol. 1110 (eds Riechmann, J. L. & Wellmer, F.) 203-216 (Springer, 2014).
40. Wang, S. et al. Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array. Plant Biotechnol. J. 12, 787-796 (2014).
41. Friesen, T. L., Xu, S. S. & Harris, M. O. Stem rust, tan spot, stagonospora nodorum blotch, and hessian fly resistance in Langdon durum-Aegilops tauschii synthetic hexaploid wheat lines. Crop Sci. 48, 1062-1070 (2008).
42. Luo, M. & Wing, R. An improved method for plant BAC library construction. in Plant Functional Genomics, Vol. 236 (ed. Grotewold, E.) 3-19 (Humana Press, 2003).
43. Shi, X., Zeng, H., Xue, Y. & Luo, M. A pair of new BAC and BIBAC vectors that facilitate BAC/BIBAC library construction and intact large genomic DNA insert exchange. Plant Methods 7, 33 (2011).
44. Ewing, B., Hillier, L., Wendl, M.C.& Green, P. Base-calling of automated sequencer traces using Phred. I. Accuracy assessment. Genome Res. 8, 175-185 (1998).
45. Simpson, J. T. et al. ABySS: a parallel assembler for short read sequence data. Genome Res. 19, 1117-1123 (2009).
46. Yuan, C. et al. Distribution, frequency and variation of stripe rust resistance loci Yr10, Lr34/Yr18 and Yr36 in Chinese wheat cultivars. J. Genet. Genomics 39, 587-592 (2012).
47. Uauy, C. et al. A modified TILLING approach to detect induced mutations in tetraploid and hexaploid wheat. BMC Plant Biol. 9, 115 (2009).
48. Till, B. J., Zerr, T., Comai, L. & Henikoff, S. A protocol for tilling and ecotilling in plants and animals. Nat. Protoc. 1, 2465-2477 (2006).
49. Weeks, J. T., Anderson, O. D. & Blechl, A. E. Rapid production of multiple independent lines of fertile transgenic wheat (Triticum aestivum). Plant Physiol. 102, 1077-1084 (1993).
50. Lv, B. et al. Characterization of FLOWERING LOCUS T1 (FT1) gene in Brachypodium and wheat. PLoS ONE 9, e94171 (2014).
51. Harwood, W. A. et al. in Transgenic Wheat, Barley and Oats: Production and Characterization Protocols, Vol. 478 (eds Jones, D. H. & Shewry, R. P.) 137-147 (Humana Press, 2009).
52. Bragg, J. N. et al. Generation and characterization of the Western Regional Research Center Brachypodium T-DNA insertional mutant collection. PLoS ONE 7, e41916 (2012).
53. Boivin, E. B., Lepage, É., Matton, D. P., De Crescenzo, G. & Jolicoeur, M. Transient expression of antibodies in suspension plant cell suspension cultures is enhanced when co-transformed with the tomato bushy stunt virus p19 viral suppressor of gene silencing. Biotechnol. Prog. 26, 1534-1543 (2010).
54. Bolger, A. M., Lohse, M. & Usadel, B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30, 2114-2120 (2014).
55. Dobin, A. et al. STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29, 15-21 (2013).
56. Anders, S., Pyl, P. T. & Huber, W. HTSeq - a Python framework to work with high-throughput sequencing data. Bioinformatics 31, 166-169 (2014).
57. Anders, S. & Huber, W. Differential expression analysis for sequence count data. Genome Biol. 11, R106 (2010).
58. Du, Z., Zhou, X., Ling, Y., Zhang, Z. & Su, Z. agriGO: a GO analysis toolkit for the agricultural community. Nucleic Acids Res. 38, W64-W70 (2010).
59. Cantu, D. et al. Comparative analysis of protein-protein interactions in the defense response of rice and wheat. BMC Genomics 14, 166 (2013).
60. Pei, H. et al. The HSP90-RAR1-SGT1 based protein interactome in barley and stripe rust. Physiol. Mol. Plant Pathol. 91, 11-19 (2015).
61. Zhao, X. Y., Cheng, Z. J. & Zhang, X. S. Overexpression of TaMADS1, a SEPALLATA-like gene in wheat, causes early flowering and the abnormal development of floral organs in Arabidopsis. Planta 223, 698-707 (2006).