-
1
-
-
84871726428
-
Review of infectious bronchitis virus around the world
-
Department of Population Health, Poultry Diagnostic and Research Center, College of Veterinary Medicine, 953 College Station Road, University of Georgia, Athens, GA 30602, USA. mjackwoo@uga.edu; PMID: 23397833
-
Jackwood MW. Review of infectious bronchitis virus around the world. Avian Dis. Department of Population Health, Poultry Diagnostic and Research Center, College of Veterinary Medicine, 953 College Station Road, University of Georgia, Athens, GA 30602, USA. mjackwoo@uga.edu; 2012; 56: 634–641. https://doi.org/10.1637/10227-043012-Review.1 PMID: 23397833
-
(2012)
Avian Dis
, vol.56
, pp. 634-641
-
-
Jackwood, M.W.1
-
2
-
-
0014985001
-
Abnormalities in Laying Chickens Following Exposure to Infectious Bronchitis Virus at One Day Old
-
PMID: 5547755
-
Crinion RAP, Ball RA, Hofstad MS. Abnormalities in Laying Chickens Following Exposure to Infectious Bronchitis Virus at One Day Old. Avian Dis. 1971; 15: 42. https://doi.org/10.2307/1588386 PMID: 5547755
-
(1971)
Avian Dis
, vol.15
, pp. 42
-
-
Crinion, R.A.P.1
Ball, R.A.2
Hofstad, M.S.3
-
3
-
-
84861942409
-
Molecular evolution and emergence of avian gammacoronaviruses
-
Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, GA 30602, United States. mjackwoo@uga.edu: Elsevier B.V; PMID: 22609285
-
Jackwood MW, Hall D, Handel A. Molecular evolution and emergence of avian gammacoronaviruses. Infect Genet Evol. Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, GA 30602, United States. mjackwoo@uga.edu: Elsevier B.V; 2012; 12: 1305–1311. https://doi.org/10.1016/j.meegid.2012.05.003 PMID: 22609285
-
(2012)
Infect Genet Evol
, vol.12
, pp. 1305-1311
-
-
Jackwood, M.W.1
Hall, D.2
Handel, A.3
-
4
-
-
79959526711
-
Infectious bronchitis virus variants: A review of the history, current situation and control measures
-
(Sjaak) Taylor & Francis Group; PMID: 21711181
-
(Sjaak) de Wit JJ, Cook JKA, van der Heijden HMJF. Infectious bronchitis virus variants: a review of the history, current situation and control measures. Avian Pathol. Taylor & Francis Group; 2011; 40: 223–235. https://doi.org/10.1080/03079457.2011.566260 PMID: 21711181
-
(2011)
Avian Pathol
, vol.40
, pp. 223-235
-
-
De Wit, J.J.1
Cook, J.K.A.2
Van Der Heijden, H.M.J.F.3
-
6
-
-
79956295589
-
Attenuated live vaccine usage affects accurate measures of virus diversity and mutation rates in avian coronavirus infectious bronchitis virus
-
Department of Population Health, College of Veterinary Medicine, 953 College Station Road, University of Georgia, Athens, GA 30602, USA.: Elsevier B.V; PMID: 21539870
-
McKinley ET, Jackwood MW, Hilt DA, Kissinger JC, Robertson JS, Lemke C, et al. Attenuated live vaccine usage affects accurate measures of virus diversity and mutation rates in avian coronavirus infectious bronchitis virus. Virus Res. Department of Population Health, College of Veterinary Medicine, 953 College Station Road, University of Georgia, Athens, GA 30602, USA.: Elsevier B.V; 2011; 158: 225–234. https://doi.org/10.1016/j.virusres.2011.04.006 PMID: 21539870
-
(2011)
Virus Res
, vol.158
, pp. 225-234
-
-
McKinley, E.T.1
Jackwood, M.W.2
Hilt, D.A.3
Kissinger, J.C.4
Robertson, J.S.5
Lemke, C.6
-
7
-
-
80053299040
-
Recombination in avian gamma-coronavirus infectious bronchitis virus
-
Department of Population Health, Poultry Diagnostic and Research Center, College of Veterinary Medicine, University of Georgia, Athens, GA 30602, USA. sthor@uga.edu; PMID: 21994806
-
Thor SW, Hilt DA, Kissinger JC, Paterson AH, Jackwood MW. Recombination in avian gamma-coronavirus infectious bronchitis virus. Viruses. Department of Population Health, Poultry Diagnostic and Research Center, College of Veterinary Medicine, University of Georgia, Athens, GA 30602, USA. sthor@uga.edu; 2011; 3: 1777–1799. https://doi.org/10.3390/v3091777 PMID: 21994806
-
(2011)
Viruses
, vol.3
, pp. 1777-1799
-
-
Thor, S.W.1
Hilt, D.A.2
Kissinger, J.C.3
Paterson, A.H.4
Jackwood, M.W.5
-
8
-
-
85006975202
-
A novel variant of the infectious bronchitis virus resulting from recombination events in Italy and Spain
-
Taylor & Francis; PMID: 27329854
-
Moreno A, Franzo G, Massi P, Tosi G, Blanco A, Antilles N, et al. A novel variant of the infectious bronchitis virus resulting from recombination events in Italy and Spain. Avian Pathol. Taylor & Francis; 2016; 1–28. https://doi.org/10.1080/03079457.2016.1200011 PMID: 27329854
-
(2016)
Avian Pathol
, pp. 1-28
-
-
Moreno, A.1
Franzo, G.2
Massi, P.3
Tosi, G.4
Blanco, A.5
Antilles, N.6
-
9
-
-
84960121026
-
S1 gene-based phylogeny of infectious bronchitis virus: An attempt to harmonize virus classification
-
PMID: 26883378
-
Valastro V, Holmes EC, Britton P, Fusaro A, Jackwood MW, Cattoli G, et al. S1 gene-based phylogeny of infectious bronchitis virus: An attempt to harmonize virus classification. Infect Genet Evol. Elsevier; 2016; 39: 349–364. https://doi.org/10.1016/j.meegid.2016.02.015 PMID: 26883378
-
(2016)
Infect Genet Evol. Elsevier
, vol.39
, pp. 349-364
-
-
Valastro, V.1
Holmes, E.C.2
Britton, P.3
Fusaro, A.4
Jackwood, M.W.5
Cattoli, G.6
-
10
-
-
84867375181
-
The long view: 40 years of infectious bronchitis research
-
Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, 30602, USA. mjackwoo@uga.edu; PMID: 22702451
-
Cook JKA, Jackwood M, Jones RC. The long view: 40 years of infectious bronchitis research. Avian Pathol. Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, 30602, USA. mjackwoo@uga.edu; 2012; 41: 239–250. https://doi.org/10.1080/03079457.2012. 680432 PMID: 22702451
-
(2012)
Avian Pathol
, vol.41
, pp. 239-250
-
-
Cook, J.K.A.1
Jackwood, M.2
Jones, R.C.3
-
11
-
-
0034975154
-
Characterization of three infectious bronchitis virus isolates from China associated with proventriculus in vaccinated chickens. Avian Dis
-
Yu L, Jiang Y, Low S, Wang Z, Nam SJ, Liu W, et al. Characterization of three infectious bronchitis virus isolates from China associated with proventriculus in vaccinated chickens. Avian Dis. JSTOR; 2001; 45: 416–424. https://doi.org/10.2307/1592981
-
(2001)
JSTOR
, vol.45
, pp. 416-424
-
-
Yu, L.1
Jiang, Y.2
Low, S.3
Wang, Z.4
Nam, S.J.5
Liu, W.6
-
12
-
-
0001825048
-
Isolation and identification of glandular stomach type IBV (QX IBV) in chickens
-
Yudong W, YongLin W, Zichun Z, GenChe F, Yihai J, Xiange L, et al. Isolation and identification of glandular stomach type IBV (QX IBV) in chickens. Chinese J Anim Quar. 1998; 15: 1–3.
-
(1998)
Chinese J Anim Quar
, vol.15
, pp. 1-3
-
-
Yudong, W.1
YongLin, W.2
Zichun, Z.3
GenChe, F.4
Yihai, J.5
Xiange, L.6
-
13
-
-
33748997062
-
Molecular epizootiology of avian infectious bronchitis in Russia
-
Taylor & Francis Group; PMID: 16990148
-
Bochkov YA, Batchenko G V., Shcherbakova LO, Borisov A V., Drygin V V. Molecular epizootiology of avian infectious bronchitis in Russia. Avian Pathol. Taylor & Francis Group; 2006; 35: 379–393. https://doi.org/10.1080/03079450600921008 PMID: 16990148
-
(2006)
Avian Pathol
, vol.35
, pp. 379-393
-
-
Bochkov, Y.A.1
Batchenko, G.V.2
Shcherbakova, L.O.3
Borisov, A.V.4
Drygin, V.V.5
-
14
-
-
80053276373
-
Molecular characterization of infectious bronchitis virus isolates from Russia and neighbouring countries: Identification of intertypic recombination in the S1 gene
-
PMID: 21854179
-
Ovchinnikova E V, Bochkov YA, Shcherbakova LO, Nikonova ZB, Zinyakov NG, Elatkin NP, et al. Molecular characterization of infectious bronchitis virus isolates from Russia and neighbouring countries: identification of intertypic recombination in the S1 gene. Avian Pathol. 2011; 40: 507–514. https://doi.org/10.1080/03079457.2011.605782 PMID: 21854179
-
(2011)
Avian Pathol
, vol.40
, pp. 507-514
-
-
Ovchinnikova, E.V.1
Bochkov, Y.A.2
Shcherbakova, L.O.3
Nikonova, Z.B.4
Zinyakov, N.G.5
Elatkin, N.P.6
-
16
-
-
84952861261
-
Detection of the Chinese Genotype of Infectious Bronchitis Virus (QX-type) in Iran
-
B-F Mh, C S, Hosseini H. Detection of the Chinese Genotype of Infectious Bronchitis Virus (QX-type) in Iran. Iran J Virol Iran Soc Virol Iran J Virol. 2013; 7: 57–60.
-
(2013)
Iran J Virol Iran Soc Virol Iran J Virol
, vol.7
, pp. 57-60
-
-
Mh, B.-F.1
C, S.2
Hosseini, H.3
-
17
-
-
84964286015
-
Genotyping of infectious bronchitis viruses from broiler farms in Iraq during 2014–2015
-
Springer Vienna; PMID: 26887967
-
Seger W, GhalyanchiLangeroudi A, Karimi V, Madadgar O, Marandi MV, Hashemzadeh M. Genotyping of infectious bronchitis viruses from broiler farms in Iraq during 2014–2015. Arch Virol. Springer Vienna; 2016; 161: 1229–37. https://doi.org/10.1007/s00705-016-2790-2 PMID: 26887967
-
(2016)
Arch Virol
, vol.161
, pp. 1229-1237
-
-
Seger, W.1
GhalyanchiLangeroudi, A.2
Karimi, V.3
Madadgar, O.4
Marandi, M.V.5
Hashemzadeh, M.6
-
18
-
-
84857039762
-
Emergence of novel strains of avian infectious bronchitis virus in Sweden
-
PMID: 22005179
-
Abro SH, Renström LHM, Ullman K, Isaksson M, Zohari S, Jansson DS, et al. Emergence of novel strains of avian infectious bronchitis virus in Sweden. Vet Microbiol. 2012; 155: 237–246. https://doi.org/10.1016/j.vetmic.2011.09.022 PMID: 22005179
-
(2012)
Vet Microbiol
, vol.155
, pp. 237-246
-
-
Abro, S.H.1
Renström, L.H.M.2
Ullman, K.3
Isaksson, M.4
Zohari, S.5
Jansson, D.S.6
-
19
-
-
20444401864
-
Evidence of circulation of a Chinese strain of infectious bronchitis virus (QXIBV) in Italy
-
PMID: 15923564
-
Beato MS, De Battisti C, Terregino C, Drago A, Capua I, Ortali G. Evidence of circulation of a Chinese strain of infectious bronchitis virus (QXIBV) in Italy. Vet Rec. 2005; 156: 720. PMID: 15923564
-
(2005)
Vet Rec
, vol.156
, pp. 720
-
-
Beato, M.S.1
De Battisti, C.2
Terregino, C.3
Drago, A.4
Capua, I.5
Ortali, G.6
-
21
-
-
84992391539
-
Effect of different vaccination strategies on IBV QX population dynamics and clinical outbreaks
-
PMID: 27670071
-
Franzo G, Tucciarone CM, Blanco A, Nofrarías M, Biarnés M, Cortey M, et al. Effect of different vaccination strategies on IBV QX population dynamics and clinical outbreaks. Vaccine. 2016; https://doi.org/10.1016/j.vaccine.2016.09.014 PMID: 27670071
-
(2016)
Vaccine
-
-
Franzo, G.1
Tucciarone, C.M.2
Blanco, A.3
Nofrarías, M.4
Biarnés, M.5
Cortey, M.6
-
22
-
-
79952259463
-
Detection of IBV QX in commercial broiler flocks in the UK
-
PMID: 21262658
-
Irvine RM, Cox WJ, Ceeraz V, Reid SM, Ellis RJ, Jones RM, et al. Detection of IBV QX in commercial broiler flocks in the UK. Vet Rec. 2010; 167: 877–879. https://doi.org/10.1136/vr.c6692 PMID: 21262658
-
(2010)
Vet Rec
, vol.167
, pp. 877-879
-
-
Irvine, R.M.1
Cox, W.J.2
Ceeraz, V.3
Reid, S.M.4
Ellis, R.J.5
Jones, R.M.6
-
23
-
-
84946025294
-
Survey indicates circulation of 4/91 and QX-type infectious bronchitis viruses in Hungary in 2014—Short communication
-
PMID: 26551428
-
Kiss I, Mató T, Homonnay ZG, Kojer J, Farsang A, Bálint Á, et al. Survey indicates circulation of 4/91 and QX-type infectious bronchitis viruses in Hungary in 2014—Short communication. Acta Vet Hung. Akadémiai Kiadó; 2015; 63: 382–388. https://doi.org/10.1556/004.2015.036 PMID: 26551428
-
(2015)
Acta Vet Hung. Akadémiai Kiadó
, vol.63
, pp. 382-388
-
-
Kiss, I.1
Mató, T.2
Homonnay, Z.G.3
Kojer, J.4
Farsang, A.5
Bálint, Á.6
-
24
-
-
78449254672
-
Molecular analysis of infectious bronchitis viruses isolated in Slovenia between 1990 and 2005: A retrospective study
-
Springer US; PMID: 20844944
-
Krapež U, Slavec B, Barlič-Maganja D, Rojs OZ. Molecular analysis of infectious bronchitis viruses isolated in Slovenia between 1990 and 2005: a retrospective study. Virus Genes. Springer US; 2010; 41: 414–416. https://doi.org/10.1007/s11262-010-0528-x PMID: 20844944
-
(2010)
Virus Genes
, vol.41
, pp. 414-416
-
-
Krapež, U.1
Slavec, B.2
Barlič-Maganja, D.3
Rojs, O.Z.4
-
25
-
-
45849130234
-
A reverse transcriptase-polymerase chain reaction survey of infectious bronchitis virus genotypes in Western Europe from 2002 to 2006
-
Taylor & Francis Group; PMID: 18568650
-
Worthington KJ, Currie RJW, Jones RC. A reverse transcriptase-polymerase chain reaction survey of infectious bronchitis virus genotypes in Western Europe from 2002 to 2006. Avian Pathol. Taylor & Francis Group; 2008; 37: 247–257. https://doi.org/10.1080/03079450801986529 PMID: 18568650
-
(2008)
Avian Pathol
, vol.37
, pp. 247-257
-
-
Worthington, K.J.1
Currie, R.J.W.2
Jones, R.C.3
-
26
-
-
84909590170
-
Continued use of IBV 793B vaccine needs reassessment after its withdrawal led to the genotype’s disappearance
-
PMID: 25446828
-
Franzo G, Naylor CJ, Lupini C, Drigo M, Catelli E, Listorti V, et al. Continued use of IBV 793B vaccine needs reassessment after its withdrawal led to the genotype’s disappearance. Vaccine. 2014; 32. https://doi.org/10.1016/j.vaccine.2014.10.006 PMID: 25446828
-
(2014)
Vaccine
, vol.32
-
-
Franzo, G.1
Naylor, C.J.2
Lupini, C.3
Drigo, M.4
Catelli, E.5
Listorti, V.6
-
27
-
-
75649120425
-
Comparison of the pathogenicity of QX-like, M41 and 793/B infectious bronchitis strains from different pathological conditions
-
Taylor & Francis Group; PMID: 19937534
-
Benyeda Z, Mató T, Süveges T, Szabó É, Kardi V, Abonyi-Tóth Z, et al. Comparison of the pathogenicity of QX-like, M41 and 793/B infectious bronchitis strains from different pathological conditions. Avian Pathol. Taylor & Francis Group; 2009; 38: 449–456. https://doi.org/10.1080/03079450903349196PMID: 19937534
-
(2009)
Avian Pathol
, vol.38
, pp. 449-456
-
-
Benyeda, Z.1
Mató, T.2
Süveges, T.3
Szabó, É.4
Kardi, V.5
Abonyi-Tóth, Z.6
-
28
-
-
80053241216
-
Induction of cystic oviducts and protection against early challenge with infectious bronchitis virus sero-type D388 (genotype QX) by maternally derived antibodies and by early vaccination
-
PMID: 21834621
-
De Wit JJ, Nieuwenhuisen-Van Wilgen J, Hoogkamer A, Van De Sande H, Zuidam GJ, Fabri THF. Induction of cystic oviducts and protection against early challenge with infectious bronchitis virus sero-type D388 (genotype QX) by maternally derived antibodies and by early vaccination Avian Pathology. 2017; https://doi.org/10.1080/03079457.2011.599060 PMID: 21834621
-
(2017)
Avian Pathology
-
-
De Wit, J.J.1
Nieuwenhuisen-Van Wilgen, J.2
Hoogkamer, A.3
Van De Sande, H.4
Zuidam, G.J.5
Fabri, T.H.F.6
-
29
-
-
51849097414
-
Pathogenicity of a QX strain of infectious bronchitis virus in specific pathogen free and commercial broiler chickens, and evaluation of protection induced by a vaccination programme based on the Ma5 and 4/91 serotypes
-
Taylor & Francis; PMID: 18798022
-
Terregino C, Toffan A, Serena Beato M, De Nardi R, Vascellari M, Meini A, et al. Pathogenicity of a QX strain of infectious bronchitis virus in specific pathogen free and commercial broiler chickens, and evaluation of protection induced by a vaccination programme based on the Ma5 and 4/91 serotypes. Avian Pathol. Taylor & Francis; 2008; 37: 487–493. https://doi.org/10.1080/03079450802356938 PMID: 18798022
-
(2008)
Avian Pathol
, vol.37
, pp. 487-493
-
-
Terregino, C.1
Toffan, A.2
Serena Beato, M.3
De Nardi, R.4
Vascellari, M.5
Meini, A.6
-
30
-
-
0033213887
-
Breadth of protection of the respiratory tract provided by different live-attenuated infectious bronchitis vaccines against challenge with infectious bronchitis viruses of heterologous serotypes
-
Taylor & Francis; PMID: 26911602
-
Cook JKA, Orbell SJ, Woods MA, Huggins MB. Breadth of protection of the respiratory tract provided by different live-attenuated infectious bronchitis vaccines against challenge with infectious bronchitis viruses of heterologous serotypes. Avian Pathol. Taylor & Francis; 1999; 28: 477–485. https://doi.org/10.1080/03079459994506 PMID: 26911602
-
(1999)
Avian Pathol
, vol.28
, pp. 477-485
-
-
Cook, J.K.A.1
Orbell, S.J.2
Woods, M.A.3
Huggins, M.B.4
-
31
-
-
79951684472
-
Efficacy and safety of an attenuated live QX-like infectious bronchitis virus strain as a vaccine for chickens
-
Taylor & Francis
-
Geerligs HJ, Boelm G-J, Meinders CAM, Stuurman BGE, Symons J, Tarres-Call J, et al. Efficacy and safety of an attenuated live QX-like infectious bronchitis virus strain as a vaccine for chickens. Avian Pathol. Taylor & Francis; 2011; 40: 93–102.
-
(2011)
Avian Pathol
, vol.40
, pp. 93-102
-
-
Geerligs, H.J.1
Boelm, G.-J.2
Meinders, C.A.M.3
Stuurman, B.G.E.4
Symons, J.5
Tarres-Call, J.6
-
32
-
-
0033451505
-
Longitudinal field studies of infectious bronchitis virus and avian pneumovirus in broilers using type-specific polymerase chain reactions
-
Taylor & Francis
-
Cavanagh D, Mawditt K, Britton P, Naylor CJ. Longitudinal field studies of infectious bronchitis virus and avian pneumovirus in broilers using type-specific polymerase chain reactions. Avian Pathol. Taylor & Francis; 1999; 28: 593–605. https://doi.org/10.1080/03079459994399
-
(1999)
Avian Pathol
, vol.28
, pp. 593-605
-
-
Cavanagh, D.1
Mawditt, K.2
Britton, P.3
Naylor, C.J.4
-
33
-
-
84875619226
-
MAFFT multiple sequence alignment software version 7: Improvements in performance and usability
-
Immunology Frontier Research Center, Osaka University, Suita, Osaka, Japan. kazutaka.katoh@aist.go.jp; PMID: 23329690
-
Katoh K, Standley DM. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. Immunology Frontier Research Center, Osaka University, Suita, Osaka, Japan. kazutaka.katoh@aist.go.jp; 2013; 30: 772–780. https://doi.org/10.1093/molbev/mst010PMID: 23329690
-
(2013)
Mol Biol Evol
, vol.30
, pp. 772-780
-
-
Katoh, K.1
Standley, D.M.2
-
34
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
-
PMID: 20525638
-
Guindon S, Dufayard J-FF, Lefort V, Anisimova M, Hordijk W, Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0. Syst Biol. 2010; 59: 307–321. https://doi.org/10.1093/sysbio/syq010 PMID: 20525638
-
(2010)
Syst Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.-F.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
35
-
-
84864453108
-
JModelTest 2: More models, new heuristics and parallel computing
-
Darriba D, Taboada GL, Doallo R, Posada D. JModelTest 2: More models, new heuristics and parallel computing. Nat Methods. 2012; 9: 772. Available: http://www.scopus.com/inward/record.url?partnerID=yv4JPVwI&eid=2-s2.0-84864453108&md5=7a17d1357c732351ca532d037615b0d0
-
(2012)
Nat Methods
, vol.9
, pp. 772
-
-
Darriba, D.1
Taboada, G.L.2
Doallo, R.3
Posada, D.4
-
36
-
-
85013750548
-
RDP4: Detection and analysis of recombination patterns in virus genomes
-
PMID: 27774277
-
Martin DP, Murrell B, Golden M, Khoosal A, Muhire B. RDP4: Detection and analysis of recombination patterns in virus genomes. Virus Evol. 2015; 1: vev003. https://doi.org/10.1093/ve/vev003 PMID: 27774277
-
(2015)
Virus Evol
, vol.1
, pp. vev003
-
-
Martin, D.P.1
Murrell, B.2
Golden, M.3
Khoosal, A.4
Muhire, B.5
-
37
-
-
33748770095
-
Automated phylogenetic detection of recombination using a genetic algorithm
-
Oxford University Press; PMID: 16818476
-
Pond SLK, Posada D, Gravenor MB, Woelk CH, Frost SDW. Automated phylogenetic detection of recombination using a genetic algorithm. Mol Biol Evol. Oxford University Press; 2006; 23: 1891–1901. https://doi.org/10.1093/molbev/msl051 PMID: 16818476
-
(2006)
Mol Biol Evol
, vol.23
, pp. 1891-1901
-
-
Pond, S.L.K.1
Posada, D.2
Gravenor, M.B.3
Woelk, C.H.4
Frost, S.D.W.5
-
38
-
-
15844406550
-
HyPhy: Hypothesis testing using phylogenies
-
Frost SDW, Muse S V, editors. PMID: 15509596
-
Pond SLK. HyPhy: hypothesis testing using phylogenies. Frost SDW, Muse S V, editors. Bioinformatics. 2005; 21: 676. https://doi.org/10.1093/bioinformatics/bti079 PMID: 15509596
-
(2005)
Bioinformatics
, vol.21
, pp. 676
-
-
Pond, S.L.K.1
-
39
-
-
85084326730
-
Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen)
-
PMID: 27774300
-
Rambaut A, Lam TT, Max Carvalho L, Pybus OG. Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen). Virus Evol. 2016; 2: vew007. https://doi.org/10.1093/ve/vew007 PMID: 27774300
-
(2016)
Virus Evol
, vol.2
, pp. vew007
-
-
Rambaut, A.1
Lam, T.T.2
Max Carvalho, L.3
Pybus, O.G.4
-
40
-
-
85029867920
-
The effects of sampling strategy on the quality of reconstruction of viral population dynamics using Bayesian skyline family coalescent methods: A simulation study
-
PMID: 27774296
-
Hall MD, Woolhouse MEJ, Rambaut A. The effects of sampling strategy on the quality of reconstruction of viral population dynamics using Bayesian skyline family coalescent methods: A simulation study. Virus Evol. 2016; 2. https://doi.org/10.1093/ve/vew003 PMID: 27774296
-
(2016)
Virus Evol.
, vol.2
-
-
Hall, M.D.1
Woolhouse, M.E.J.2
Rambaut, A.3
-
41
-
-
84864530626
-
Bayesian phylogenetics with BEAUti and the BEAST 1.7
-
PMID: 22367748
-
Drummond AJ, Suchard MA, Xie D, Rambaut A. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol. 2012; 29: 1969. https://doi.org/10.1093/molbev/mss075 PMID: 22367748
-
(2012)
Mol Biol Evol
, vol.29
, pp. 1969
-
-
Drummond, A.J.1
Suchard, M.A.2
Xie, D.3
Rambaut, A.4
-
42
-
-
84865475040
-
Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty
-
JID—8501455 Department of Microbiology and Immunology, KU Leuven, Leuven, Belgium. FAU—Baele, Guy; PMID: 22403239
-
Baele GFAU, Lemey PFAU, Bedford TFAU, Rambaut A, Suchard MA, Alekseyenko A V., et al. Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty. Molecular biology and evolution JID—8501455 Department of Microbiology and Immunology, KU Leuven, Leuven, Belgium. FAU—Baele, Guy; 2012. https://doi.org/10.1093/molbev/ mss084 PMID: 22403239
-
(2012)
Molecular Biology and Evolution
-
-
Baele, G.F.A.U.1
Lemey, P.F.A.U.2
Bedford, T.F.A.U.3
Rambaut, A.4
Suchard, M.A.5
Alekseyenko, A.V.6
-
43
-
-
84873576867
-
Improving Bayesian population dynamics inference: A coalescent-based model for multiple loci
-
Department of Biostatis-tics, Jonathan and Karin Fielding School of Public Health, University of California, Los Angeles, USA.; PMID: 23180580
-
Gill MS, Lemey P, Faria NR, Rambaut A, Shapiro B, Suchard MA. Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci. Mol Biol Evol. Department of Biostatis-tics, Jonathan and Karin Fielding School of Public Health, University of California, Los Angeles, USA.; 2013; 30: 713–724. https://doi.org/10.1093/molbev/mss265 PMID: 23180580
-
(2013)
Mol Biol Evol
, vol.30
, pp. 713-724
-
-
Gill, M.S.1
Lemey, P.2
Faria, N.R.3
Rambaut, A.4
Shapiro, B.5
Suchard, M.A.6
-
44
-
-
79954569160
-
Skyline-plot methods for estimating demographic history from nucleotide sequences
-
Centre for Macroevolution and Macroecology, Research School of Biology, Australian National University, ACT 0200, Australia. simon.ho@sydney.edu.au: Blackwell Publishing Ltd; PMID: 21481200
-
Ho SYW, Shapiro B. Skyline-plot methods for estimating demographic history from nucleotide sequences. Mol Ecol Resour. Centre for Macroevolution and Macroecology, Research School of Biology, Australian National University, ACT 0200, Australia. simon.ho@sydney.edu.au: Blackwell Publishing Ltd; 2011; 11: 423–434. https://doi.org/10.1111/j.1755-0998.2011.02988.x PMID: 21481200
-
(2011)
Mol Ecol Resour
, vol.11
, pp. 423-434
-
-
Ho, S.Y.W.1
Shapiro, B.2
-
45
-
-
70349675664
-
Bayesian phylogeography finds its roots
-
Department of Microbiology and Immunology, Katholieke Universiteit Leuven, Leuven, Belgium. philippe.lemey@uz.kuleuven.be; PMID: 19779555
-
Lemey P, Rambaut A, Drummond AJ, Suchard MA. Bayesian phylogeography finds its roots. PLoS Comput Biol. Department of Microbiology and Immunology, Katholieke Universiteit Leuven, Leuven, Belgium. philippe.lemey@uz.kuleuven.be; 2009; 5: e1000520. https://doi.org/10.1371/journal.pcbi. 1000520 PMID: 19779555
-
(2009)
Plos Comput Biol
, vol.5
, pp. e1000520
-
-
Lemey, P.1
Rambaut, A.2
Drummond, A.J.3
Suchard, M.A.4
-
47
-
-
84982994393
-
SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes
-
Oxford University Press; PMID: 27189542
-
Bielejec F, Baele G, Vrancken B, Suchard MA, Rambaut A, Lemey P, et al. SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes. Mol Biol Evol. Oxford University Press; 2016; 33: 2167–2169. https://doi.org/10.1093/molbev/msw082 PMID: 27189542
-
(2016)
Mol Biol Evol
, vol.33
, pp. 2167-2169
-
-
Bielejec, F.1
Baele, G.2
Vrancken, B.3
Suchard, M.A.4
Rambaut, A.5
Lemey, P.6
-
48
-
-
84907095419
-
R: A language and environment for statistical computing
-
Team RC. R: A language and environment for statistical computing. R Foundation for Statistical Computing; 2016.
-
(2016)
R Foundation for Statistical Computing
-
-
-
49
-
-
84862167820
-
ViPR: An open bioinformatics database and analysis resource for virology research
-
Department of Pathology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.; PMID: 22006842
-
Pickett BE, Sadat EL, Zhang Y, Noronha JM, Squires RB, Hunt V, et al. ViPR: an open bioinformatics database and analysis resource for virology research. Nucleic Acids Res. Department of Pathology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.; 2012; 40: D593–8. https://doi.org/10.1093/nar/gkr859 PMID: 22006842
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D593-D598
-
-
Pickett, B.E.1
Sadat, E.L.2
Zhang, Y.3
Noronha, J.M.4
Squires, R.B.5
Hunt, V.6
-
50
-
-
84879265191
-
Risk factors for infectious diseases in backyard poultry farms in the Poyang Lake area, China
-
Public Library of Science; PMID: 23840680
-
Wang Y, Jiang Z, Jin Z, Tan H, Xu B. Risk factors for infectious diseases in backyard poultry farms in the Poyang Lake area, China. PLoS One. Public Library of Science; 2013; 8: e67366. https://doi.org/10.1371/journal.pone.0067366 PMID: 23840680
-
(2013)
Plos One
, vol.8
-
-
Wang, Y.1
Jiang, Z.2
Jin, Z.3
Tan, H.4
Xu, B.5
-
51
-
-
34447104395
-
An overview of the epidemiology of avian influenza
-
PMID: 17126960
-
Alexander DJ. An overview of the epidemiology of avian influenza. Vaccine. 2007; 25: 5637–5644. https://doi.org/10.1016/j.vaccine.2006.10.051 PMID: 17126960
-
(2007)
Vaccine
, vol.25
, pp. 5637-5644
-
-
Alexander, D.J.1
-
52
-
-
0035020424
-
Changes in the haemagglutinin and the neuraminidase genes prior to the emergence of highly pathogenic H7N1 avian influenza viruses in Italy
-
PMID: 11448033
-
Banks J, Speidel ES, Moore E, Plowright L, Piccirillo A, Capua I, et al. Changes in the haemagglutinin and the neuraminidase genes prior to the emergence of highly pathogenic H7N1 avian influenza viruses in Italy. Arch Virol. 2001; 146: 963–73. Available: http://www.ncbi.nlm.nih.gov/pubmed/11448033PMID: 11448033
-
(2001)
Arch Virol
, vol.146
, pp. 963-973
-
-
Banks, J.1
Speidel, E.S.2
Moore, E.3
Plowright, L.4
Piccirillo, A.5
Capua, I.6
-
53
-
-
84964478783
-
Phylodynamic analysis of porcine circovirus type 2 reveals global waves of emerging genotypes and the circulation of recombinant forms
-
PMID: 27114187
-
Franzo G, Cortey M, Segalés J, Hughes J, Drigo M. Phylodynamic analysis of porcine circovirus type 2 reveals global waves of emerging genotypes and the circulation of recombinant forms. Mol Phylogenet Evol. 2016; 100. https://doi.org/10.1016/j.ympev.2016.04.028 PMID: 27114187
-
(2016)
Mol Phylogenet Evol
, vol.100
-
-
Franzo, G.1
Cortey, M.2
Segalés, J.3
Hughes, J.4
Drigo, M.5
-
54
-
-
24644465004
-
Adaptive value of high mutation rates of RNA viruses: Separating causes from consequences
-
stituto de Biologia Molecular y Celular de Plantas, Consejo Superior de Inves-tigaciones Cientificas-UPV, Avenida de los Naranjos s/n, 46022 Valencia, Spain. sfelena@ibmcp.upv.es; PMID: 16140732
-
Elena SF, Sanjuan R. Adaptive value of high mutation rates of RNA viruses: separating causes from consequences. J Virol. Instituto de Biologia Molecular y Celular de Plantas, Consejo Superior de Inves-tigaciones Cientificas-UPV, Avenida de los Naranjos s/n, 46022 Valencia, Spain. sfelena@ibmcp.upv. es; 2005; 79: 11555–11558. https://doi.org/10.1128/JVI.79.18.11555-11558.2005 PMID: 16140732
-
(2005)
J Virol
, vol.79
, pp. 11555-11558
-
-
Elena, S.F.1
Sanjuan, R.2
-
55
-
-
77951692453
-
The Evolutionary Genetics of Emerging Viruses
-
Annual Reviews
-
Holmes EC. The Evolutionary Genetics of Emerging Viruses. Annu Rev Ecol Evol Syst. Annual Reviews; 2009; 40: 353–372. https://doi.org/10.1146/annurev.ecolsys.110308.120248
-
(2009)
Annu Rev Ecol Evol Syst
, vol.40
, pp. 353-372
-
-
Holmes, E.C.1
-
56
-
-
0023666317
-
Re-excretion of an enterotropic infectious bronchitis virus by hens at point of lay after experimental infection at day old
-
PMID: 2820108
-
Jones RC, Ambali AG. Re-excretion of an enterotropic infectious bronchitis virus by hens at point of lay after experimental infection at day old. Vet Rec. 1987; 120: 617–618. PMID: 2820108
-
(1987)
Vet Rec
, vol.120
, pp. 617-618
-
-
Jones, R.C.1
Ambali, A.G.2
-
57
-
-
0141683613
-
Establishment of Persistent Avian Infectious Bronchitis Virus Infection in Antibody-Free and Antibody-Positive Chickens
-
PMID: 14562886
-
Naqi S, Gay K, Patalla P, Mondal S, Liu R. Establishment of Persistent Avian Infectious Bronchitis Virus Infection in Antibody-Free and Antibody-Positive Chickens. Avian Dis. 2003; 47: 594–601. https://doi.org/10.1637/6087 PMID: 14562886
-
(2003)
Avian Dis
, vol.47
, pp. 594-601
-
-
Naqi, S.1
Gay, K.2
Patalla, P.3
Mondal, S.4
Liu, R.5
-
58
-
-
39449115971
-
Chinese QX strain of infectious bronchitis virus isolated in the UK
-
British Medical Journal Publishing Group
-
Gough RE, Cox WJ, de B Welchman D, Worthington KJ, Jones RC. Chinese QX strain of infectious bronchitis virus isolated in the UK. Vet Rec. British Medical Journal Publishing Group; 2008; 162: 99–100. https://doi.org/10.1136/VR.162.3.99
-
(2008)
Vet Rec
, vol.162
, pp. 99-100
-
-
Gough, R.E.1
Cox, W.J.2
De B Welchman, D.3
Worthington, K.J.4
Jones, R.C.5
-
59
-
-
48249132214
-
The evolution of internet-based map server applications in the United States Department of Agriculture, Veterinary Services
-
PMID: 20422551
-
Maroney SA, McCool MJ, Geter KD, James AM. The evolution of internet-based map server applications in the United States Department of Agriculture, Veterinary Services. Vet Ital. 2007; 43: 723–730. Available: http://www.ncbi.nlm.nih.gov/pubmed/20422551 PMID: 20422551
-
(2007)
Vet Ital
, vol.43
, pp. 723-730
-
-
Maroney, S.A.1
McCool, M.J.2
Geter, K.D.3
James, A.M.4
-
60
-
-
81255163654
-
Avian coronavirus in wild aquatic birds
-
American Society for Microbiology; PMID: 21957308
-
Chu DKW, Leung CYH, Gilbert M, Joyner PH, Ng EM, Tse TM, et al. Avian coronavirus in wild aquatic birds. J Virol. American Society for Microbiology; 2011; 85: 12815–20. https://doi.org/10.1128/JVI. 05838-11 PMID: 21957308
-
(2011)
J Virol
, vol.85
, pp. 12815-12820
-
-
Chu, D.K.W.1
Leung, C.Y.H.2
Gilbert, M.3
Joyner, P.H.4
Ng, E.M.5
Tse, T.M.6
-
61
-
-
84908063185
-
Detection and molecular characterization of infectious bronchitis-like viruses in wild bird populations
-
PMID: 25133705
-
Domanska-Blicharz K, Jacukowicz A, Lisowska A, Wyrostek K, Minta Z. Detection and molecular characterization of infectious bronchitis-like viruses in wild bird populations. Avian Pathol. 2014; 43: 406–13. https://doi.org/10.1080/03079457.2014.949619 PMID: 25133705
-
(2014)
Avian Pathol
, vol.43
, pp. 406-413
-
-
Domanska-Blicharz, K.1
Jacukowicz, A.2
Lisowska, A.3
Wyrostek, K.4
Minta, Z.5
-
62
-
-
78149454326
-
Prevalence and Phylogeny of Coronaviruses in Wild Birds from the Bering Strait Area (Beringia)
-
Liu DX, editor. Public Library of Science; PMID: 21060827
-
Muradrasoli S, Bálint Á, Wahlgren J, Waldenström J, Belák S, Blomberg J, et al. Prevalence and Phylogeny of Coronaviruses in Wild Birds from the Bering Strait Area (Beringia). Liu DX, editor. PLoS One. Public Library of Science; 2010; 5: e13640. https://doi.org/10.1371/journal.pone.0013640 PMID: 21060827
-
(2010)
Plos One
, vol.5
-
-
Muradrasoli, S.1
Bálint, Á.2
Wahlgren, J.3
Waldenström, J.4
Belák, S.5
Blomberg, J.6
-
63
-
-
33646033777
-
Global Patterns of Influenza A Virus in Wild Birds
-
(NY). PMID: 16627734
-
Munster VJ, Wallensten A, Waldenstro J. Global Patterns of Influenza A Virus in Wild Birds. America (NY). 2006; 312: 384–388. https://doi.org/10.1126/science.1122438 PMID: 16627734
-
(2006)
America
, vol.312
, pp. 384-388
-
-
Munster, V.J.1
Wallensten, A.2
Waldenstro, J.3
-
64
-
-
85010754995
-
Comparative genomics of QX-like infectious bronchitis viruses in Korea
-
Springer Vienna; PMID: 28116527
-
Hong S-M, Kwon H-J, Choi K-S, Kim J-H. Comparative genomics of QX-like infectious bronchitis viruses in Korea. Arch Virol. Springer Vienna; 2017; https://doi.org/10.1007/s00705-016-3208-x PMID: 28116527
-
(2017)
Arch Virol
-
-
Hong, S.-M.1
Kwon, H.-J.2
Choi, K.-S.3
Kim, J.-H.4
|