Determination of heterotic groups for tropical Indica hybrid rice germplasm

Theoretical and Applied Genetics

Volumn 127, Issue 2, 2014, Pages 407-417

  Xie, Fangming ^a   He, Zhizhou ^a,b   Esguerra, Manuel Q ^a,c   Qiu, Fulin ^a   Ramanathan, Vairamani ^d  

^a INTERNATIONAL RICE RESEARCH INSTITUTE   (Philippines)

^b INSTITUTE OF TROPICAL BIOSCIENCE AND BIOTECHNOLOGY   (China)

^c LOUISIANA STATE UNIVERSITY   (United States)

^d Pioneer Overseas Corporation   (India)

Author keywords

[No Author keywords available]

Indexed keywords

AGRONOMY; CHROMOSOMES; GENETIC ENGINEERING;

GENETIC DIVERSITY; HIGHER YIELD; HYBRID RICE BREEDINGS; INTRA-GROUP; MOLECULAR MARKER; ON CURRENTS; RESEARCH INSTITUTES; TROPICAL ENVIRONMENTS;

TROPICS;

EID: 85028156263     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-013-2227-1     Document Type: Article

References (33)

1. Ali ML, McClung AM, Jia MH, Kimball JA, McCouch SR, Eizenga GC (2011) A rice diversity panel evaluated for genetic and agromorphological diversity between subpopulations and its geographic distribution. Crop Sci 51:2021-2035
2. Cavalli-Sforza LL, Edwards AWF (1967) Phylogenetic analysis: models and estimation procedures. Am J Human Genet 19:233-257
3. Dudley JW, Saghai Maroof MA, Rufener GK (1991) Molecular markers and grouping of parents in maize breeding programs. Crop Sci 31:718-723
4. Fischer S, Maurer HP, Würschum T, Möhring J, Piepho HP, Schön CC, Thiemt EM, Dhillon BS, Weissmann EA, Melchinger AE, Reif JC (2010) Development of heterotic groups in Triticale. Crop Sci 50:584-590
5. Garris AJ, Tai TH, Coburn JR, Kresovich S, McCouch SR (2005) Genetic structure and diversity in Oryza sativa L. Genetics 169:1631-1638
6. Griffing B (1956) Concept of general and specific combining ability in relation to diallel crossing system. Aust J Biol Sci 9:463-493
7. He ZZ, Xie FM, Chen LY, Dela Paz MA (2012) Genetic diversity of tropical hybrid rice germplasm measured by molecular markers. Rice Sci 19:193-201
8. Lanza LLB, Souza CL, Ottoboni LMM, Vieira MLC, Souza AP (1997) Genetic distance of inbred lines and prediction of maize single-cross performance using RAPD markers. Theor Appl Genet 94:1023-1030
9. Lin SC, Yuan LP (1980) Hybrid rice breeding in China. In: Innovative approaches to rice breeding. IRRI, Philippines, pp 35-51
10. Liu KJ, Muse SV (2005) PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics 21:2128-2129
11. Liu S, Chen H, Wang F, Zhu YG (2002) DNA polymorphism of main restorer lines of hybrid rice in China. Chin J Rice Sci 16:1-5
12. Lu ZM, Xu B (2010) On significance of heterotic group theory in hybrid rice breeding. Rice Sci 17:94-98
13. McNally KL, Childs KL, Bohnert R, Davidsond RM, Zhao K, Ulata VJ, Zeller G, Clark RM, Hoeng DR, Bureaug TE, Stokowski R, Ballinger DG, Frazer KA, Cox DR, Padhukasahasrame B, Bustamante CD, Weigel DW, Mackill DJ, Bruskiewich RM, Ratsch G, Buell RC, Leung H, Leach JE (2009) Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. Proc Natl Acad Sci USA 106:12273-12278
14. Melchinger AE (1999) Genetic diversity and heterosis. In: Coors JG, Pandey S (eds) The genetics and exploitation of heterosis in crops. ASA, CSSA, and SSSA, Madison, pp 99-118
15. Melchinger AE, Gumber RK (1998) Overview of heterosis and heterotic groups in agronomic crops. In: Lamkey KR, Staub JE (eds) Concepts and breeding of heterosis in crop plants. CSSA, Madison, pp 29-44
16. Menz MA, Klein RR, Unruh NC, Rooney WL, Klein PE, Mullet JE (2004) Genetic diversity of public inbreds of Sorghum determined by mapped AFLP and SSR markers. Crop Sci 44:1236-1244
17. Perrier X, Jacquemoud-Collet JP (2006) DARwin software. http://darwin.cirad.fr/darwin
18. Reif JC, Hallauer AR, Melchinger AE (2005) Heterosis and heterotic patterns in maize. Maydica 50:215-223
19. Reif JC, Hao YS, Wurschum T, Gowda M, Hahn V (2013) Genomic prediction of sunflower hybrid performance. Plant Breed 132:107-114
20. R Development Core Team (2011) R: A Language and Environment for Statistical Computing. Vienna, Austria (http://www.R-project.org/)
21. Saghai Maroof MA, Yang GP, Zhang QF, Gravois KA (1997) Correlation between molecular marker distance and hybrid performance in U.S. southern long grain rice. Crop Sci 37:145-150
22. SAS Institute Inc (2012) SAS OnlineDoc® 9.3. SAS Institute Inc, Cary
23. Thomson MJ, Zhao K, Wright M, McNally KL, Rey J, Tung CW, Reynolds A, Scheffler B, Eizenga G, McClung A, Kim H, Ismail AM, Ocampo M, Mojica C, Reveche MY, Dilla-Ermita CJ, Mauleon R, Leung H, Bustamante C, McCouch SR (2012) High-throughput single nucleotide polymorphism genotyping for breeding applications in rice using the BeadXpress platform. Mol Breed 29:875-886
24. Troyer AF (2006) Adaptedness and heterosis in corn and mule hybrids. Crop Sci 46:528-543
25. Wang SJ, Lu ZM (2006a) Genetic diversity among parental lines of Indica hybrid rice (Oryza sativa L.) in China based on coefficient of parentage. Plant Breed 125:606-612
26. Wang SJ, Lu ZM (2006b) Evolvement and analysis of genetic diversity in indica hybrid rice (Oryza sativa L.) in China. Jiangsu J Agric Sci 22:192-198
27. Wang SJ, Lu ZM (2007) Study on heterosis groups of key parental lines in indica hybrid rice (Oryza sative L.) in China. J Nanjing Agric Univ 30:14-18
28. Xie FM (1993) Hybrid performance and genetic diversity as revealed by RFLPs in rice (Oryza sativa L.). Dissertation, Texas A&M University
29. Xie FM, Guo LB, Ren GJ, Hu PS, Wang F, Xu JL, Li XQ, Qiu FL, dela Paz MA (2012) Genetic diversity and structure of indica rice varieties from two heterotic pools of southern China and IRRI. Plant Genet Resour Charact Util 10:186-193
30. Xu WJ, Virmani SS, Hernandez JE, Sebastian LS, Redoña ED, Li ZK (2002) Genetic diversity in the parental lines and heterosis of the tropical rice hybrids. Euphytica 127:139-148
31. Yuan LP (1977) Practice and theory of breeding hybrid rice. Sci Agric Sin 10(1):27-31
32. Zhang Q, Gao YJ, Saghai Maroof MA, Yang SH, Li JX (1995) Molecular divergence and hybrid performance in rice. Mol Breed 1:133-142
33. Zhao K, Wright M, Kimball J, Eizenga G, McClung A, Kovach M, Tyagi W, Ali ML, Tung CW, Reynolds A, Bustamante CD, McCouch SR (2010) Genomic diversity and introgression in O. sativa reveal impact of domestication and breeding on the rice genome. PLoS One 5. doi:10.1371/journal.pone.0010780