-
1
-
-
3142591896
-
A database for management of gene expression data in situ
-
Poustelnikova, E., Pisarev, A., Blagov, M., Samsonova, M., Reinitz, J., A database for management of gene expression data in situ. Bioinformatics 20 (2004), 2212–2221.
-
(2004)
Bioinformatics
, vol.20
, pp. 2212-2221
-
-
Poustelnikova, E.1
Pisarev, A.2
Blagov, M.3
Samsonova, M.4
Reinitz, J.5
-
2
-
-
3142734333
-
Dynamic control of positional information in the early Drosophila embryo
-
Jaeger, J., Surkova, S., Blagov, M., Janssens, H., Kosman, D., Kozlov, K.N., Manu, Myasnikova, E., Vanario-Alonso, C.E., Samsonova, M., et al. Dynamic control of positional information in the early Drosophila embryo. Nature 430 (2004), 368–371.
-
(2004)
Nature
, vol.430
, pp. 368-371
-
-
Jaeger, J.1
Surkova, S.2
Blagov, M.3
Janssens, H.4
Kosman, D.5
Kozlov, K.N.6
Manu7
Myasnikova, E.8
Vanario-Alonso, C.E.9
Samsonova, M.10
-
3
-
-
84873861213
-
Accurate measurements of dynamics and reproducibility in small genetic networks
-
Dubuis, J.O., Samanta, R., Gregor, T., Accurate measurements of dynamics and reproducibility in small genetic networks. Mol. Syst. Biol., 9, 2013, 639.
-
(2013)
Mol. Syst. Biol.
, vol.9
, pp. 639
-
-
Dubuis, J.O.1
Samanta, R.2
Gregor, T.3
-
4
-
-
71649113974
-
Visualization of individual Scr mRNAs during Drosophila embryogenesis yields evidence for transcriptional bursting
-
Paré, A., Lemons, D., Kosman, D., Beaver, W., Freund, Y., McGinnis, W., Visualization of individual Scr mRNAs during Drosophila embryogenesis yields evidence for transcriptional bursting. Curr. Biol. 19 (2009), 2037–2042.
-
(2009)
Curr. Biol.
, vol.19
, pp. 2037-2042
-
-
Paré, A.1
Lemons, D.2
Kosman, D.3
Beaver, W.4
Freund, Y.5
McGinnis, W.6
-
5
-
-
80755189936
-
Gene length may contribute to graded transcriptional responses in the Drosophila embryo
-
McHale, P., Mizutani, C.M., Kosman, D., MacKay, D.L., Belu, M., Hermann, A., McGinnis, W., Bier, E., Hwa, T., Gene length may contribute to graded transcriptional responses in the Drosophila embryo. Dev. Biol. 360 (2011), 230–240.
-
(2011)
Dev. Biol.
, vol.360
, pp. 230-240
-
-
McHale, P.1
Mizutani, C.M.2
Kosman, D.3
MacKay, D.L.4
Belu, M.5
Hermann, A.6
McGinnis, W.7
Bier, E.8
Hwa, T.9
-
6
-
-
80052007879
-
Multiple enhancers ensure precision of gap gene-expression patterns in the Drosophila embryo
-
Perry, M.W., Boettiger, A.N., Levine, M., Multiple enhancers ensure precision of gap gene-expression patterns in the Drosophila embryo. Proc. Natl. Acad. Sci. USA 108 (2011), 13570–13575.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 13570-13575
-
-
Perry, M.W.1
Boettiger, A.N.2
Levine, M.3
-
7
-
-
84878318299
-
Paused Pol II coordinates tissue morphogenesis in the Drosophila embryo
-
Lagha, M., Bothma, J.P., Esposito, E., Ng, S., Stefanik, L., Tsui, C., Johnston, J., Chen, K., Gilmour, D.S., Zeitlinger, J., Levine, M.S., Paused Pol II coordinates tissue morphogenesis in the Drosophila embryo. Cell 153 (2013), 976–987.
-
(2013)
Cell
, vol.153
, pp. 976-987
-
-
Lagha, M.1
Bothma, J.P.2
Esposito, E.3
Ng, S.4
Stefanik, L.5
Tsui, C.6
Johnston, J.7
Chen, K.8
Gilmour, D.S.9
Zeitlinger, J.10
Levine, M.S.11
-
8
-
-
0032185810
-
Localization of ASH1 mRNA particles in living yeast
-
Bertrand, E., Chartrand, P., Schaefer, M., Shenoy, S.M., Singer, R.H., Long, R.M., Localization of ASH1 mRNA particles in living yeast. Mol. Cell 2 (1998), 437–445.
-
(1998)
Mol. Cell
, vol.2
, pp. 437-445
-
-
Bertrand, E.1
Chartrand, P.2
Schaefer, M.3
Shenoy, S.M.4
Singer, R.H.5
Long, R.M.6
-
9
-
-
28944434119
-
Real-time kinetics of gene activity in individual bacteria
-
Golding, I., Paulsson, J., Zawilski, S.M., Cox, E.C., Real-time kinetics of gene activity in individual bacteria. Cell 123 (2005), 1025–1036.
-
(2005)
Cell
, vol.123
, pp. 1025-1036
-
-
Golding, I.1
Paulsson, J.2
Zawilski, S.M.3
Cox, E.C.4
-
10
-
-
77955174763
-
Single-allele analysis of transcription kinetics in living mammalian cells
-
Yunger, S., Rosenfeld, L., Garini, Y., Shav-Tal, Y., Single-allele analysis of transcription kinetics in living mammalian cells. Nat. Methods 7 (2010), 631–633.
-
(2010)
Nat. Methods
, vol.7
, pp. 631-633
-
-
Yunger, S.1
Rosenfeld, L.2
Garini, Y.3
Shav-Tal, Y.4
-
11
-
-
79955407832
-
Real-time observation of transcription initiation and elongation on an endogenous yeast gene
-
Larson, D.R., Zenklusen, D., Wu, B., Chao, J.A., Singer, R.H., Real-time observation of transcription initiation and elongation on an endogenous yeast gene. Science 332 (2011), 475–478.
-
(2011)
Science
, vol.332
, pp. 475-478
-
-
Larson, D.R.1
Zenklusen, D.2
Wu, B.3
Chao, J.A.4
Singer, R.H.5
-
12
-
-
79551537838
-
A transgenic mouse for in vivo detection of endogenous labeled mRNA
-
Lionnet, T., Czaplinski, K., Darzacq, X., Shav-Tal, Y., Wells, A.L., Chao, J.A., Park, H.Y., de Turris, V., Lopez-Jones, M., Singer, R.H., A transgenic mouse for in vivo detection of endogenous labeled mRNA. Nat. Methods 8 (2011), 165–170.
-
(2011)
Nat. Methods
, vol.8
, pp. 165-170
-
-
Lionnet, T.1
Czaplinski, K.2
Darzacq, X.3
Shav-Tal, Y.4
Wells, A.L.5
Chao, J.A.6
Park, H.Y.7
de Turris, V.8
Lopez-Jones, M.9
Singer, R.H.10
-
13
-
-
0038376482
-
Live imaging of endogenous RNA reveals a diffusion and entrapment mechanism for nanos mRNA localization in Drosophila
-
Forrest, K.M., Gavis, E.R., Live imaging of endogenous RNA reveals a diffusion and entrapment mechanism for nanos mRNA localization in Drosophila. Curr. Biol. 13 (2003), 1159–1168.
-
(2003)
Curr. Biol.
, vol.13
, pp. 1159-1168
-
-
Forrest, K.M.1
Gavis, E.R.2
-
14
-
-
0024569785
-
The bicoid protein is a positive regulator of hunchback transcription in the early Drosophila embryo
-
Driever, W., Nüsslein-Volhard, C., The bicoid protein is a positive regulator of hunchback transcription in the early Drosophila embryo. Nature 337 (1989), 138–143.
-
(1989)
Nature
, vol.337
, pp. 138-143
-
-
Driever, W.1
Nüsslein-Volhard, C.2
-
15
-
-
0029160137
-
Posterior stripe expression of hunchback is driven from two promoters by a common enhancer element
-
Margolis, J.S., Borowsky, M.L., Steingrímsson, E., Shim, C.W., Lengyel, J.A., Posakony, J.W., Posterior stripe expression of hunchback is driven from two promoters by a common enhancer element. Development 121 (1995), 3067–3077.
-
(1995)
Development
, vol.121
, pp. 3067-3077
-
-
Margolis, J.S.1
Borowsky, M.L.2
Steingrímsson, E.3
Shim, C.W.4
Lengyel, J.A.5
Posakony, J.W.6
-
16
-
-
84870503729
-
Precision of hunchback expression in the Drosophila embryo
-
Perry, M.W., Bothma, J.P., Luu, R.D., Levine, M., Precision of hunchback expression in the Drosophila embryo. Curr. Biol. 22 (2012), 2247–2252.
-
(2012)
Curr. Biol.
, vol.22
, pp. 2247-2252
-
-
Perry, M.W.1
Bothma, J.P.2
Luu, R.D.3
Levine, M.4
-
17
-
-
84882796113
-
Precise developmental gene expression arises from globally stochastic transcriptional activity
-
Little, S.C., Tikhonov, M., Gregor, T., Precise developmental gene expression arises from globally stochastic transcriptional activity. Cell 154 (2013), 789–800.
-
(2013)
Cell
, vol.154
, pp. 789-800
-
-
Little, S.C.1
Tikhonov, M.2
Gregor, T.3
-
18
-
-
70350783881
-
Tracking rates of transcription and splicing in vivo
-
Ardehali, M.B., Lis, J.T., Tracking rates of transcription and splicing in vivo. Nat. Struct. Mol. Biol. 16 (2009), 1123–1124.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 1123-1124
-
-
Ardehali, M.B.1
Lis, J.T.2
-
19
-
-
77956672588
-
Genome-wide analysis of mRNA decay patterns during early Drosophila development
-
Thomsen, S., Anders, S., Janga, S.C., Huber, W., Alonso, C.R., Genome-wide analysis of mRNA decay patterns during early Drosophila development. Genome Biol., 11, 2010, R93.
-
(2010)
Genome Biol.
, vol.11
, pp. R93
-
-
Thomsen, S.1
Anders, S.2
Janga, S.C.3
Huber, W.4
Alonso, C.R.5
-
20
-
-
78650132334
-
Developmental control of late replication and S phase length
-
Shermoen, A.W., McCleland, M.L., O'Farrell, P.H., Developmental control of late replication and S phase length. Curr. Biol. 20 (2010), 2067–2077.
-
(2010)
Curr. Biol.
, vol.20
, pp. 2067-2077
-
-
Shermoen, A.W.1
McCleland, M.L.2
O'Farrell, P.H.3
-
21
-
-
0026049391
-
RNA polymerase II pauses at the 5′ end of the transcriptionally induced Drosophila hsp70 gene
-
O'Brien, T., Lis, J.T., RNA polymerase II pauses at the 5′ end of the transcriptionally induced Drosophila hsp70 gene. Mol. Cell. Biol. 11 (1991), 5285–5290.
-
(1991)
Mol. Cell. Biol.
, vol.11
, pp. 5285-5290
-
-
O'Brien, T.1
Lis, J.T.2
-
22
-
-
27644547453
-
Bicoid determines sharp and precise target gene expression in the Drosophila embryo
-
Crauk, O., Dostatni, N., Bicoid determines sharp and precise target gene expression in the Drosophila embryo. Curr. Biol. 15 (2005), 1888–1898.
-
(2005)
Curr. Biol.
, vol.15
, pp. 1888-1898
-
-
Crauk, O.1
Dostatni, N.2
-
23
-
-
34447099234
-
Probing the limits to positional information
-
Gregor, T., Tank, D.W., Wieschaus, E.F., Bialek, W., Probing the limits to positional information. Cell 130 (2007), 153–164.
-
(2007)
Cell
, vol.130
, pp. 153-164
-
-
Gregor, T.1
Tank, D.W.2
Wieschaus, E.F.3
Bialek, W.4
-
24
-
-
45449087493
-
Precise registration of gene expression boundaries by a repressive morphogen in Drosophila
-
Yu, D., Small, S., Precise registration of gene expression boundaries by a repressive morphogen in Drosophila. Curr. Biol. 18 (2008), 868–876.
-
(2008)
Curr. Biol.
, vol.18
, pp. 868-876
-
-
Yu, D.1
Small, S.2
-
25
-
-
15544371346
-
Gene regulation at the single-cell level
-
Rosenfeld, N., Young, J.W., Alon, U., Swain, P.S., Elowitz, M.B., Gene regulation at the single-cell level. Science 307 (2005), 1962–1965.
-
(2005)
Science
, vol.307
, pp. 1962-1965
-
-
Rosenfeld, N.1
Young, J.W.2
Alon, U.3
Swain, P.S.4
Elowitz, M.B.5
-
26
-
-
84876840287
-
Dynamic interpretation of maternal inputs by the Drosophila segmentation gene network
-
Liu, F., Morrison, A.H., Gregor, T., Dynamic interpretation of maternal inputs by the Drosophila segmentation gene network. Proc. Natl. Acad. Sci. USA 110 (2013), 6724–6729.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 6724-6729
-
-
Liu, F.1
Morrison, A.H.2
Gregor, T.3
-
27
-
-
34447104600
-
Stability and nuclear dynamics of the bicoid morphogen gradient
-
Gregor, T., Wieschaus, E.F., McGregor, A.P., Bialek, W., Tank, D.W., Stability and nuclear dynamics of the bicoid morphogen gradient. Cell 130 (2007), 141–152.
-
(2007)
Cell
, vol.130
, pp. 141-152
-
-
Gregor, T.1
Wieschaus, E.F.2
McGregor, A.P.3
Bialek, W.4
Tank, D.W.5
-
28
-
-
0026006495
-
Progression of the cell cycle through mitosis leads to abortion of nascent transcripts
-
Shermoen, A.W., O'Farrell, P.H., Progression of the cell cycle through mitosis leads to abortion of nascent transcripts. Cell 67 (1991), 303–310.
-
(1991)
Cell
, vol.67
, pp. 303-310
-
-
Shermoen, A.W.1
O'Farrell, P.H.2
-
29
-
-
78651369529
-
The gap gene network
-
Jaeger, J., The gap gene network. Cell. Mol. Life Sci. 68 (2011), 243–274.
-
(2011)
Cell. Mol. Life Sci.
, vol.68
, pp. 243-274
-
-
Jaeger, J.1
-
30
-
-
84876966607
-
Uncovering a dynamic feature of the transcriptional regulatory network for anterior-posterior patterning in the Drosophila embryo
-
Liu, J., Ma, J., Uncovering a dynamic feature of the transcriptional regulatory network for anterior-posterior patterning in the Drosophila embryo. PLoS ONE, 8, 2013, e62641.
-
(2013)
PLoS ONE
, vol.8
, pp. e62641
-
-
Liu, J.1
Ma, J.2
-
31
-
-
85143470848
-
The Regulatory Genome: Gene Regulatory Networks in Development and Evolution
-
Academic Press Burlington
-
Davidson, E.H., The Regulatory Genome: Gene Regulatory Networks in Development and Evolution. 2006, Academic Press, Burlington.
-
(2006)
-
-
Davidson, E.H.1
-
32
-
-
54249105943
-
From signals to patterns: space, time, and mathematics in developmental biology
-
Lewis, J., From signals to patterns: space, time, and mathematics in developmental biology. Science 322 (2008), 399–403.
-
(2008)
Science
, vol.322
, pp. 399-403
-
-
Lewis, J.1
-
33
-
-
84874179119
-
How cells know where they are
-
Lander, A.D., How cells know where they are. Science 339 (2013), 923–927.
-
(2013)
Science
, vol.339
, pp. 923-927
-
-
Lander, A.D.1
-
34
-
-
70350023619
-
The maternal-to-zygotic transition: a play in two acts
-
Tadros, W., Lipshitz, H.D., The maternal-to-zygotic transition: a play in two acts. Development 136 (2009), 3033–3042.
-
(2009)
Development
, vol.136
, pp. 3033-3042
-
-
Tadros, W.1
Lipshitz, H.D.2
-
35
-
-
0035937417
-
Modulation of a transcription factor counteracts heterochromatic gene silencing in Drosophila
-
Ahmad, K., Henikoff, S., Modulation of a transcription factor counteracts heterochromatic gene silencing in Drosophila. Cell 104 (2001), 839–847.
-
(2001)
Cell
, vol.104
, pp. 839-847
-
-
Ahmad, K.1
Henikoff, S.2
-
36
-
-
79955950854
-
Multiple sequence-specific factors generate the nucleosome-depleted region on CLN2 promoter
-
Bai, L., Ondracka, A., Cross, F.R., Multiple sequence-specific factors generate the nucleosome-depleted region on CLN2 promoter. Mol. Cell 42 (2011), 465–476.
-
(2011)
Mol. Cell
, vol.42
, pp. 465-476
-
-
Bai, L.1
Ondracka, A.2
Cross, F.R.3
-
37
-
-
84860350869
-
A system of repressor gradients spatially organizes the boundaries of Bicoid-dependent target genes
-
Chen, H., Xu, Z., Mei, C., Yu, D., Small, S., A system of repressor gradients spatially organizes the boundaries of Bicoid-dependent target genes. Cell 149 (2012), 618–629.
-
(2012)
Cell
, vol.149
, pp. 618-629
-
-
Chen, H.1
Xu, Z.2
Mei, C.3
Yu, D.4
Small, S.5
|