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Volumn 32, Issue 24, 2016, Pages 3815-3822

Stams: STRING-assisted module search for genome wide association studies and application to autism

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; AUTISM; BIOLOGY; GENE REGULATORY NETWORK; GENETICS; GENOME-WIDE ASSOCIATION STUDY; HUMAN; PHENOTYPE; PROCEDURES;

EID: 85027524547     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btw530     Document Type: Article
Times cited : (21)

References (29)
  • 1
    • 0034069495 scopus 로고    scopus 로고
    • Gene Ontology: Tool for the unification of biology
    • Ashburner,M. et al. (2000) Gene Ontology: tool for the unification of biology. Nat. Genet., 25, 25-29.
    • (2000) Nat. Genet. , vol.25 , pp. 25-29
    • Ashburner, M.1
  • 2
    • 3142665525 scopus 로고    scopus 로고
    • Gostat: Find statistically overrepresented Gene Ontologies within a group of genes
    • Beissbarth,T. and Speed,T.P. (2004) GOstat: find statistically overrepresented Gene Ontologies within a group of genes. Bioinformatics, 20, 1464-1465.
    • (2004) Bioinformatics , vol.20 , pp. 1464-1465
    • Beissbarth, T.1    Speed, T.P.2
  • 3
    • 13244253770 scopus 로고    scopus 로고
    • Graph-based iterative Group Analysis enhances microarray interpretation
    • Breitling,R. et al. (2004) Graph-based iterative Group Analysis enhances microarray interpretation. BMC Bioinformatics, 5, 100.
    • (2004) BMC Bioinformatics , vol.5 , pp. 100
    • Breitling, R.1
  • 4
    • 84969213492 scopus 로고    scopus 로고
    • Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
    • Burton,P.R. et al. (2007) Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature, 447, 661-678.
    • (2007) Nature , vol.447 , pp. 661-678
    • Burton, P.R.1
  • 5
    • 84869231859 scopus 로고    scopus 로고
    • CTTNBP2, but not CTTNBP2NL, regulates dendritic spinogenesis and synaptic distribution of the striatin-PP2A complex
    • Chen,Y.K. et al. (2012) CTTNBP2, but not CTTNBP2NL, regulates dendritic spinogenesis and synaptic distribution of the striatin-PP2A complex. Mol. Biol. Cell, 23, 4383-4392.
    • (2012) Mol. Biol. Cell , vol.23 , pp. 4383-4392
    • Chen, Y.K.1
  • 6
    • 0034766845 scopus 로고    scopus 로고
    • Identification of the human cortactin-binding protein-2 gene from the autism candidate region at 7q31
    • Cheung,J. et al. (2001) Identification of the human cortactin-binding protein-2 gene from the autism candidate region at 7q31. Genomics, 78, 7-11.
    • (2001) Genomics , vol.78 , pp. 7-11
    • Cheung, J.1
  • 7
    • 35348891430 scopus 로고    scopus 로고
    • Network-based classification of breast cancer metastasis
    • Chuang,H.Y. et al. (2007) Network-based classification of breast cancer metastasis. Mol Syst Biol, 3, 140.
    • (2007) Mol Syst Biol , vol.3 , pp. 140
    • Chuang, H.Y.1
  • 8
    • 78651275182 scopus 로고    scopus 로고
    • Reactome: A database of reactions, pathways and biological processes
    • Croft,D. et al. (2010) Reactome: a database of reactions, pathways and biological processes. Nucleic Acids Res., 39, D691-D697.
    • (2010) Nucleic Acids Res , vol.39 , pp. D691-D697
    • Croft, D.1
  • 9
    • 84907683752 scopus 로고    scopus 로고
    • Genetic variant in folate homeostasis is associated with lower warfarin dose in African Americans
    • Daneshjou,R. et al. (2014) Genetic variant in folate homeostasis is associated with lower warfarin dose in African Americans. Blood, 124, 2298-2305.
    • (2014) Blood , vol.124 , pp. 2298-2305
    • Daneshjou, R.1
  • 10
    • 84912144889 scopus 로고    scopus 로고
    • Synaptic, transcriptional and chromatingenes disrupted in autism
    • De Rubeis,S. et al. (2014) Synaptic, transcriptional and chromatingenes disrupted in autism. Nature, 515(7526), 209-215.
    • (2014) Nature , vol.515 , Issue.7526 , pp. 209-215
    • De Rubeis, S.1
  • 11
    • 84857439237 scopus 로고    scopus 로고
    • Comparison of pathway analysis approaches using lung cancer GWAS data sets
    • Fehringer,G. et al. (2012) Comparison of Pathway Analysis Approaches Using Lung Cancer GWAS Data Sets. PLoS One, 7, e31816.
    • (2012) PLoS One , vol.7
    • Fehringer, G.1
  • 12
    • 84876515907 scopus 로고    scopus 로고
    • String v9.1: Protein-protein interaction networks, with increased coverage and integration
    • Franceschini,A. et al. (2012) STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res., 41, D808-D815.
    • (2012) Nucleic Acids Res , vol.41 , pp. D808-D815
    • Franceschini, A.1
  • 13
    • 0034916325 scopus 로고    scopus 로고
    • The autism genetic resource exchange: A resource for the study of autism and related neuropsychiatric conditions
    • Geschwind,D.H. et al. (2001) The autism genetic resource exchange: a resource for the study of autism and related neuropsychiatric conditions. Am. J. Hum. Genet., 69, 463-466.
    • (2001) Am. J. Hum. Genet. , vol.69 , pp. 463-466
    • Geschwind, D.H.1
  • 14
    • 79958035893 scopus 로고    scopus 로고
    • Rare de novo variants associated with autism implicate a large functional network of genes involved in formation and function of synapses
    • Gilman,S.R. et al. (2011) Rare de novo variants associated with autism implicate a large functional network of genes involved in formation and function of synapses. Neuron, 70, 898-907.
    • (2011) Neuron , vol.70 , pp. 898-907
    • Gilman, S.R.1
  • 15
    • 59149096171 scopus 로고    scopus 로고
    • A PP2A phosphatase high density interaction network identifies a novel striatin-interacting phosphatase and kinase complex linked to the cerebral cavernous malformation 3 (CCM3) protein*
    • Goudreault,M. et al. (2009) A PP2A phosphatase high density interaction network identifies a novel striatin-interacting phosphatase and kinase complex linked to the cerebral cavernous malformation 3 (CCM3) protein*. Mol. Cell. Proteomics, 8, 157-171.
    • (2009) Mol. Cell. Proteomics , vol.8 , pp. 157-171
    • Goudreault, M.1
  • 16
    • 77954205450 scopus 로고    scopus 로고
    • Next-generation VariationHunter: Combinatorial algorithms for transposon insertion discovery
    • Hormozdiari,F. et al. (2010) Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery. Bioinformatics, 26, i350-i357.
    • (2010) Bioinformatics , vol.26 , pp. i350-i357
    • Hormozdiari, F.1
  • 17
    • 0000801240 scopus 로고    scopus 로고
    • Discovering regulatory and signalling circuits in molecular interaction networks
    • Ideker,T. et al. (2002) Discovering regulatory and signalling circuits in molecular interaction networks. Bioinformatics, 18, S233-S240.
    • (2002) Bioinformatics , vol.18 , pp. S233-S240
    • Ideker, T.1
  • 18
    • 78650562728 scopus 로고    scopus 로고
    • DMGWAs: Dense module searching for genome-wide association studies in protein-protein interaction networks
    • Jia,P. et al. (2011) dmGWAS: dense module searching for genome-wide association studies in protein-protein interaction networks. Bioinformatics, 27: 95-102.
    • (2011) Bioinformatics , vol.27 , pp. 95-102
    • Jia, P.1
  • 19
    • 84864590971 scopus 로고    scopus 로고
    • Network-assisted investigation of combined causal signals from genome-wide association studies in schizophrenia
    • Jia,P. et al. (2012) Network-assisted investigation of combined causal signals from genome-wide association studies in schizophrenia. PLoS Comput. Biol., 8, e1002587.
    • (2012) PLoS Comput. Biol. , vol.8
    • Jia, P.1
  • 20
    • 0032919364 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • Kanehisa,M. and Goto,S. (1999) KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res., 27, 29-34.
    • (1999) Nucleic Acids Res , vol.27 , pp. 29-34
    • Kanehisa, M.1    Goto, S.2
  • 21
    • 77955064853 scopus 로고    scopus 로고
    • A versatile gene-based test for genome-wide association studies
    • Liu,J.Z. et al. (2010) A versatile gene-based test for genome-wide association studies. Am. J. Hum. Genet., 87, 139-145.
    • (2010) Am. J. Hum. Genet. , vol.87 , pp. 139-145
    • Liu, J.Z.1
  • 22
    • 34248593385 scopus 로고    scopus 로고
    • Gene expression network analysis and applications to immunology
    • Nacu,S. et al. (2007) Gene expression network analysis and applications to immunology. Bioinformatics, 23, 850-858.
    • (2007) Bioinformatics , vol.23 , pp. 850-858
    • Nacu, S.1
  • 23
    • 20144387067 scopus 로고    scopus 로고
    • The MIPS mammalian protein-protein interaction database
    • Pagel,P. et al. (2005) The MIPS mammalian protein-protein interaction database. Bioinformatics, 21, 832-834.
    • (2005) Bioinformatics , vol.21 , pp. 832-834
    • Pagel, P.1
  • 24
    • 84889561601 scopus 로고    scopus 로고
    • Integrative functional genomic analyses implicate specific molecular pathways and circuits in autism
    • Parikshak,N.N. et al. (2013) Integrative functional genomic analyses implicate specific molecular pathways and circuits in autism. Cell, 155, 1008-1021.
    • (2013) Cell , vol.155 , pp. 1008-1021
    • Parikshak, N.N.1
  • 25
    • 34548292504 scopus 로고    scopus 로고
    • Plink: A tool set for whole-genome association and population-based linkage analyses
    • Purcell,S. et al. (2007) PLINK: a tool set for whole-genome association and population-based linkage analyses. Am. J. Hum. Genet., 81, 559-575.
    • (2007) Am. J. Hum. Genet. , vol.81 , pp. 559-575
    • Purcell, S.1
  • 26
    • 84942113437 scopus 로고    scopus 로고
    • Insights into autism spectrum disorder genomic architecture and biology from 71 risk loci
    • Sanders,S.J. et al. (2015) Insights into autism spectrum disorder genomic architecture and biology from 71 risk loci. Neuron, 87, 1215-1233.
    • (2015) Neuron , vol.87 , pp. 1215-1233
    • Sanders, S.J.1
  • 27
    • 27344435774 scopus 로고    scopus 로고
    • Gene set enrichment analysis: A knowledge-basedapproach for interpreting genome-wideexpression profiles
    • Subramanian,A. et al. (2005) Gene set enrichment analysis: a knowledge-basedapproach for interpreting genome-wideexpression profiles. Proc. Natl. Acad. Sci. USA, 102, 15545-15550.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 15545-15550
    • Subramanian, A.1
  • 28
    • 36249029788 scopus 로고    scopus 로고
    • Pathway-based approaches for analysis of genomewide association studies
    • Wang,K. et al. (2007) Pathway-based approaches for analysis of genomewide association studies. Am. J. Hum. Genet., 81, 1278-1283.
    • (2007) Am. J. Hum. Genet. , vol.81 , pp. 1278-1283
    • Wang, K.1
  • 29
    • 84943591576 scopus 로고    scopus 로고
    • EW_DMGWAS: Edge-weighted dense module search for genome-wide association studies and gene expression profiles
    • Wang,Q. et al. (2015) EW_dmGWAS: edge-weighted dense module search for genome-wide association studies and gene expression profiles. Bioinformatics, 31, 2591-2594.
    • (2015) Bioinformatics , vol.31 , pp. 2591-2594
    • Wang, Q.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.