Development of a high-density linkage map and mapping of the three-pistil gene (Pis1) in wheat using GBS markers

BMC Genomics

Volumn 18, Issue 1, 2017, Pages

  Yang, Zaijun ^a   Chen, Zhenyong ^a   Peng, Zhengsong ^a   Yu, Yan ^a   Liao, Mingli ^a   Wei, Shuhong ^a  

^a CHINA WEST NORMAL UNIVERSITY   (China)

Author keywords

Genotyping by sequencing (GBS); Kompetitive allele specific PCR (KASP); Three pistil mutation; Wheat

Indexed keywords

DNA FLANKING REGION; GENE AMPLIFICATION; GENE FREQUENCY; GENE MAPPING; GENE MUTATION; GENETIC LINKAGE; GENETIC MARKER; GENOTYPE; HUMAN; HUMAN EXPERIMENT; MARKER ASSISTED BREEDING; NONHUMAN; PISTIL; POLYMERASE CHAIN REACTION; SINGLE NUCLEOTIDE POLYMORPHISM; TRITICUM AESTIVUM; CHROMOSOMAL MAPPING; GENETICS; PLANT GENE; PROCEDURES; WHEAT;

CHROMOSOME MAPPING; GENES, PLANT; GENETIC MARKERS; GENOTYPE; POLYMORPHISM, SINGLE NUCLEOTIDE; TRITICUM;

EID: 85026519004     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/s12864-017-3960-7     Document Type: Article

References (28)

1. Dencic S. Designing a wheat ideotype with increased sink capacity. Plant Breed. 1994;112:311-7.
2. Frederic JR, Bauer PJ. Physiological and numerical components of wheat yield. In: Satorre EH, Slafer GA, editors. Wheat ecology and physiologyof yield determination. New York: Food Products Press; 2000. p. 45-65.
3. Peng ZS, Yen C, Yang JL. Chromosomal location of genes for supernumerary spikelet in bread wheat. Euphytica. 1998;103:109-14.
4. Martinek P, Bednar J. Changes of spike morphology (multirowspike-MRS, long glumes-LG) in wheat (Triticum aestivum L.) and their importance for breeding, In: The proceedings of international conference 'genetic collections, isogenic and alloplasmiclines' Novosibirsk, Russia, 2001; 192-4.
5. Peng ZS. A new mutation in wheat producing three pistils in a floret. J Agron Crop Sci. 2003;189:270-2.
6. Peng ZS, Yang J, Wei SH, Zeng JH. Characterization of common wheat (Triticum aestivum L.) mutation line producing three pistils in a floret. Hereditas. 2004;141:15-8.
7. Peng ZS, Martinek P, Kosuge K, Kuboyama T. Genetic mapping of a mutant gene producing three pistils per floret in common wheat. J Appl Genet. 2008;49:135-9.
8. Yang ZJ, Peng ZS, Wei SH, Yu Y. Identification of differentially expressed genes in three-pistil mutation in wheat using annealing control primer system. Gene. 2011;485:81-4.
9. Yang ZJ, Peng ZS, Yang H, Yang J, Wei SH, Cai P. Suppression subtractive hybridization identified differentially expressed genes in pistil mutations in wheat. Plant Mol Bio Rep. 2011;29:431-9.
10. Yang ZJ, Peng ZS, Wei SH, Yan Y. Cloning and characterization of endo-beta-1,4-glucanase genes in the common wheat line three pistils. Genet Mol Biol. 2013;36:400-7.
11. Yang ZJ, Peng ZS, Wei SH, Liao ML, Yu Y, Jang ZY. Pistilldoy mutant reveals key insights into stamen and pistil development in wheat (Triticum aestivum L.). BMC Genomics. 2015;16:211-20.
12. Poland JA, Rife TW. Genotyping-by-sequencing for plant breeding and genetics. Plant Genome. 2012;5:92-102.
13. Poland JA, Brown PJ, Sorrells ME, Jannink JL. Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping by-sequencing approach. PLoS One. 2012;7:251-64.
14. Somers DJ, Isaac P, Edwards K. A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.). Theor Appl Genet. 2004;109:1105-14.
15. He J, Zhao X, Laroche A, Lu Z, Liu H, Li Z. Genotyping by sequencing (GBS), an ultimate marker-assisted selection (MAS) tool to accelerate plant breeding. Front Plant Sci. 2014;5:484-91.
16. Li G, Wang Y, Chen MS, Edae E, Poland J, Akhunov E, Chao S, Bai G, Carver B, Yan L. Precisely mapping a major gene conferring resistance to hessian fly in bread wheat using genotyping-by-sequencing. BMC Genomics. 2015;16:108-17.
17. Li H, Vikram P, Singh RP, Kilian A, Carling J, Song J, Burgueno-Ferreira JA, Bhavani S, Huerta-Espino J, Payne T, Sehgal D, Wenzl P, Singh S. A high density GBS map of bread wheat and its application for dissecting complex disease resistance traits. BMC Genomics. 2015;16:216-30.
18. Cavanagh CR, Chao SM, Wang SC, Huang BE, Stephen S, Kiani S. Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars. Proc Natl Acad Sci U S A. 2013;110:8057-62.
19. Wang SC, Wong D, Forrest K, Allen A, Chao S, Huang BE. Characterization of polyploid wheat genomic diversity using a high-density 90000 single nucleotide polymorphism array. Plant Biotechnol J. 2014;12:787-96.
20. Spindel J, Wright M, Chen C, Joshua Cobb J, Gage J, Harrington S, Lorieux M, Ahmadi N, McCouch S. Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations. Theor Appl Genet. 2013;126:2699-716.
21. Sonah H, Bastien M, Iquira E, Tardivel A, Légaré G, Boyle B. An improved genotyping by sequencing (gbs) approach offering increased versatility and efficiency of snp discovery and genotyping. PLoS One. 2013;8:570.
22. Liu H, Bayer M, Druka A, Russell JR, Hackett CA, Poland J. An evaluation of genotyping by sequencing (GBS) to map the breviaristatum-e (ari-e) locus in cultivated barley. BMC Genomics. 2014;15:1-11.
23. Elshire RJ, Glaubitz JC, Sun Q, Poland JA, Kawamoto K, Buckler ES, Mitchell SE. A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS One. 2011;6:1-10.
24. Lu F, Lipka AE, Glaubitz J, Elshire R, Cherney JH, Casler MD. Switchgrass genomic diversity, ploidy, and evolution: novel insights from a network-based SNP discovery protocol. PLoS Genet. 2013;9:139-47.
25. van Ooijen JW. JoinMap® 4, software for the calculation of genetic linkage maps in experimental populations. Wageningen, Netherlands: Kyazma BV; 2006.
26. Kosambi D. The estimation of map distances from recombination values. Ann Eugenics. 1994;12:172-5.
27. Voorrips R. MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered. 2002;93:77-8.
28. Van Oojjen JW. MapQTL 6, software for the mapping of quantitative trait loci in experimental populations of diploid species. Wageningen, Netherlands: Kyazma BW; 2009.