Systematic analysis of protein identity between Zika virus and other arthropod-borne viruses;Analyse systématique des similarités protéiques entre le virus Zika et d’autres virus transmis par des arthropodes;Análisis sistemático de la identidad proteica entre el virus de Zika y otros virus trasmitidos por artrópodos

Bulletin of the World Health Organization

Volumn 95, Issue 7, 2017, Pages 517-525

  Chang, Hsiao Han ^a   Huber, Roland G ^b   Bond, Peter J ^b   Grad, Yonatan H ^a   Camerini, David ^c   Maurer Stroh, Sebastian ^b   Lipsitch, Marc ^a  

^a HARVARD SCHOOL OF PUBLIC HEALTH   (United States)

^b BIOINFORMATICS INSTITUTE   (Singapore)

^c Antigen Discovery Inc   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

NONSTRUCTURAL PROTEIN 1; VIRAL PROTEIN;

AMINO ACID; CHIKUNGUNYA; DATABASE; DENGUE FEVER; FRAGMENTATION; MOSQUITO; POLYMORPHISM; PROTEIN; SOLVENT; VIRAL DISEASE; VIRUS; YELLOW FEVER;

ARBOVIRUS; ARTICLE; BIOINFORMATICS; CHIKUNGUNYA VIRUS; COMPARATIVE STUDY; DENGUE VIRUS; GENETIC POLYMORPHISM; IDENTITY RECOGNITION; JAPANESE ENCEPHALITIS VIRUS; NONHUMAN; PROTEIN ANALYSIS; PROTEIN STRUCTURE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; WEST NILE VIRUS; YELLOW FEVER VIRUS; ZIKA VIRUS; ANIMAL; FLAVIVIRUS; HUMAN; INSECT VECTOR; PROTEIN DATABASE; ULTRASTRUCTURE;

ARBOVIRUS; CHIKUNGUNYA VIRUS; JAPANESE ENCEPHALITIS VIRUS; ZIKA VIRUS;

ANIMALS; CHIKUNGUNYA VIRUS; DATABASES, PROTEIN; DENGUE VIRUS; ENCEPHALITIS VIRUS, JAPANESE; FLAVIVIRUS; HUMANS; INSECT VECTORS; POLYMORPHISM, GENETIC; WEST NILE VIRUS; YELLOW FEVER VIRUS; ZIKA VIRUS;

EID: 85021791285     PISSN: 00429686     EISSN: 15640604     Source Type: Journal    
DOI: 10.2471/BLT.16.182105     Document Type: Article

References (29)

1. Target product profiles for better diagnostic tests for Zika virus infection. Geneva: World Health Organization; 2016. Available from: http://www.who. int/csr/research-and-development/zika-tpp.pdf [cited 2017 Feb 7].
2. Ioos S, Mallet HP, Leparc Goffart I, Gauthier V, Cardoso T, Herida M. Current Zika virus epidemiology and recent epidemics. Med Mal Infect. 2014 Jul;44(7):302-7. doi: http://dx.doi.org/10.1016/j.medmal.2014.04.008 PMID:25001879
3. Strauss JH, Strauss EG. Virus evolution: how does an enveloped virus make a regular structure? Cell. 2001 Apr 6;105(1):5-8. doi: http://dx.doi. org/10.1016/S0092-8674(01)00291-4 PMID: 11300997
4. Pardee K, Green AA, Takahashi MK, Braff D, Lambert G, Lee JW, et al. Rapid, low-cost detection of Zika virus using programmable biomolecular components. Cell. 2016 May 19;165(5):1255-66. doi: http://dx.doi. org/10.1016/j.cell.2016.04.059 PMID: 27160350
5. Charrel RN, Leparc-Goffart I, Pas S, de Lamballerie X, Koopmans M, Reusken C. Background review for diagnostic test development for Zika virus infection. Bull World Health Organ. 2016 Aug 1;94(8):574-584D. doi: http:// dx.doi.org/10.2471/BLT.16.171207 PMID: 27516635
6. Allwinn R, Doerr HW, Emmerich P, Schmitz H, Preiser W. Cross-reactivity in flavivirus serology: new implications of an old finding? Med Microbiol Immunol. 2002 Mar;190(4):199-202. doi: http://dx.doi.org/10.1007/s00430-001-0107-9 PMID: 12005333
7. Koraka P, Zeller H, Niedrig M, Osterhaus AD, Groen J. Reactivity of serum samples from patients with a flavivirus infection measured by immunofluorescence assay and ELISA. Microbes Infect. 2002 Oct;4(12):1209-15. doi: http://dx.doi.org/10.1016/S1286-4579(02)01647-7 PMID: 12467761
8. Lanciotti RS, Kosoy OL, Laven JJ, Velez JO, Lambert AJ, Johnson AJ, et al. Genetic and serologic properties of Zika virus associated with an epidemic, Yap State, Micronesia, 2007. Emerg Infect Dis. 2008 Aug;14(8):1232-9. doi:http://dx.doi.org/10.3201/eid1408.080287 PMID: 18680646
9. Tappe D, Rissland J, Gabriel M, Emmerich P, Gunther S, Held G, et al. First case of laboratory-confirmed Zika virus infection imported into Europe, November 2013. Euro Surveill. 2014 01 30;19(4):20685.doi: http://dx.doi. org/10.2807/1560-7917.ES2014.19.4.20685 PMID: 24507467
10. Vorou R. Letter to the editor: diagnostic challenges to be considered regarding Zika virus in the context of the presence of the vector Aedes albopictus in Europe. Euro Surveill. 2016;21(10):30161. doi: http://dx.doi. org/10.2807/1560-7917.ES.2016.21.10.30161 PMID: 26988027
11. Zammarchi L, Stella G, Mantella A, Bartolozzi D, Tappe D, Günther S, et al. Zika virus infections imported to Italy: clinical, immunological and virological findings, and public health implications. J Clin Virol. 2015 Feb;63:32-5. doi: http://dx.doi.org/10.1016/j.jcv.2014.12.005 PMID:25600600
12. Barba-Spaeth G, Dejnirattisai W, Rouvinski A, Vaney MC, Medits I, Sharma A, et al. Structural basis of potent Zika-dengue virus antibody crossneutralization. Nature. 2016 Aug 4;536(7614):48-53. doi: http://dx.doi. org/10.1038/nature18938 PMID: 27338953
13. Revised diagnostic testing for Zika, chikungunya, and dengue viruses in US public health laboratories. Atlanta: Centers for Disease Control and Prevention; 2016. Available from: https://www.cdc.gov/zika/pdfs/ denvchikvzikv-testing-algorithm.pdf [cited 2016 Jun 21].
14. Haug CJ, Kieny MP, Murgue B. The Zika challenge. N Engl J Med. 2016 May 12;374(19):1801-3. doi: http://dx.doi.org/10.1056/NEJMp1603734 PMID:27028782
15. Megret F, Hugnot JP, Falconar A, Gentry MK, Morens DM, Murray JM, et al. Use of recombinant fusion proteins and monoclonal antibodies to define linear and discontinuous antigenic sites on the dengue virus envelope glycoprotein. Virology. 1992 Apr;187(2):480-91. doi: http://dx.doi. org/10.1016/0042-6822(92)90450-4 PMID: 1372140
16. Felgner PL, Kayala MA, Vigil A, Burk C, Nakajima-Sasaki R, Pablo J, et al. A Burkholderia pseudomallei protein microarray reveals serodiagnostic and cross-reactive antigens. Proc Natl Acad Sci U S A. 2009 Aug 11;106(32):13499-504. doi: http://dx.doi.org/10.1073/pnas.0812080106 PMID: 19666533
17. Faria NR, Azevedo RdoS, Kraemer MU, Souza R, Cunha MS, Hill SC, et al. Zika virus in the Americas: Early epidemiological and genetic findings. Science. 2016 Apr 15;352(6283):345-9. doi: http://dx.doi.org/10.1126/science. aaf5036 PMID: 27013429
18. Brister JR, Bao Y, Zhdanov SA, Ostapchuck Y, Chetvernin V, Kiryutin B, et al. Virus Variation Resource-recent updates and future directions. Nucleic Acids Res. 2014 Jan;42(Database issue):D660-5. doi: http://dx.doi.org/10.1093/ nar/gkt1268 PMID: 24304891
19. Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, et al. BLAST+: architecture and applications. BMC Bioinformatics. 2009 12 15;10(1):421. doi: http://dx.doi.org/10.1186/1471-2105-10-421 PMID:20003500
20. Van Regenmortel MH, Pellequer JL. Predicting antigenic determinants in proteins: looking for unidimensional solutions to a three-dimensional problem? Pept Res. 1994 Jul-Aug;7(4):224-8. PMID: 7535133
21. Xu X, Song H, Qi J, Liu Y, Wang H, Su C, et al. Contribution of intertwined loop to membrane association revealed by Zika virus full-length NS1 structure. EMBO J. 2016 Oct 17;35(20):2170-8. doi: http://dx.doi. org/10.15252/embj.201695290 PMID: 27578809
22. Sirohi D, Chen Z, Sun L, Klose T, Pierson TC, Rossmann MG, et al. The 3.8 Å resolution cryo-EM structure of Zika virus. Science. 2016 Apr 22;352(6284):467-70. doi: http://dx.doi.org/10.1126/science.aaf5316 PMID:27033547
23. Weiser J, Shenkin PS, Still WC. Approximate atomic surfaces from linear combinations of pairwise overlaps (LCPO). J Comput Chem. 1999 20(2):217-30. doi: http://dx.doi.org/10.1002/(SICI)1096-987X(19990130)20:2<217::AID-JCC4>3.0.CO;2-A
24. Marzinek JK, Holdbrook DA, Huber RG, Verma C, Bond PJ. Pushing the envelope: dengue viral membrane coaxed into shape by molecular simulations. Structure. 2016 Aug 2;24(8):1410-20. doi: http://dx.doi. org/10.1016/j.str.2016.05.014 PMID: 27396828
25. Pickett BE, Sadat EL, Zhang Y, Noronha JM, Squires RB, Hunt V, et al. ViPR: an open bioinformatics database and analysis resource for virology research. Nucleic Acids Res. 2012 Jan;40(Database issue):D593-8. doi: http://dx.doi. org/10.1093/nar/gkr859 PMID: 22006842
26. Liu J, Zhang Y, Lei X, Zhang Z. Natural selection of protein structural and functional properties: a single nucleotide polymorphism perspective. Genome Biol. 2008 04 8;9(4):R69. doi: http://dx.doi.org/10.1186/gb-2008-9-4-r69 PMID: 18397526
27. Xu GJ, Kula T, Xu Q, Li MZ, Vernon SD, Ndung’u T, et al. Viral immunology. Comprehensive serological profiling of human populations using a synthetic human virome. Science. 2015 Jun 5;348(6239):aaa0698. doi:http://dx.doi.org/10.1126/science.aaa0698 PMID: 26045439
28. Press release. Lübeck: EUROIMMUN; 2016. Available from: https://www. euroimmun.com/index.php?eID=dumpFile&t=f&f=3013&token=6cc0bb2e b7c10f484ae50ad91e69cd6424088529 [cited 2017 Mar 17].
29. Huzly D, Hanselmann I, Schmidt-Chanasit J, Panning M. High specificity of a novel Zika virus ELISA in European patients after exposure to different flaviviruses. Euro Surveill. 2016 Apr 21;21(16):30203. doi: http://dx.doi. org/10.2807/1560-7917.ES.2016.21.16.30203 PMID: 27126052