Cacao

Biotechnology in Agriculture and Forestry

Volumn 60, Issue , 2007, Pages 497-518

  Guiltinan, M J ^a  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85020887997     PISSN: 0934943X     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-3-540-49161-3_21     Document Type: Chapter

References (111)

1. Alemanno L, Berthouly M, Michaux-Ferriere N (1997) A comparison between Theobroma cacao L. zygotic embryogenesis and somatic embryogenesis from floral explants. In Vitro Cell Dev Biol-Plant 33:163-172
2. Alemanno L, Ramos T, Gargadenec A, Andary C, Ferriere N (2003) Localization and identification of phenolic compounds in Theobroma cacao L. somatic embryogenesis. Ann Bot 92:613-623
3. Alverson WS, Whitlock BA, Nyffeler R, Bayer C, Baum DA (1999) Phylogeny of the core Malvales: evidence fromNDHF sequence data. Am J Bot 86:1474-1486
4. Aneja M, Gianfagna T (2001) Induction and accumulation of caffeine in young, actively growing leaves of cocoa (Theobroma cacao L.) by wounding or infection with Crinipellis perniciosa. Physiol Mol Plant Pathol 59:13-16
5. Antunez de Mayolo G, Maximova SN, Pishak S, Guiltinan MJ (2003) Moxalactam as a counterselection antibiotic for Agrobacterium-mediated transformation and its positive effects on Theobroma cacao somatic embryogenesis. Plant Sci 164:607-615
6. Appiah AA, Flood J, Bridge PD, Archer SA (2003) Inter-and intraspecific morphometric variation and characterization of Phytophthora isolates from cocoa. Plant Pathol 52:168-180
7. Appiah AA, Flood J, Archer SA, Bridge PD (2004) Molecular analysis of the major Phytophthora species on cocoa. Plant Pathol 53:209-219
8. Arnold AE, Mejia LC, Kyllo D, Rojas EI, Maynard Z, Robbins N, Herre EA (2003) Fungal endophytes limit pathogen damage in a tropical tree. ProcNatl Acad Sci USA 100:15649-15654
9. Atkinson MD, Withers LA, Simpson MJA (1986) Characterization of cacao germplasm using isoenzyme markers. 1. A preliminary survey of diversity using starch gel electrophoresis and standardisation of the procedure. Euphytica 35:741-750
10. Bailey B, Bae H, Strem MD, Antunez de Mayolo G, Guiltinan MJ (2005a) Gene expression in leaves of Theobroma cacao in response to mechanical wounding, ethylene, or methyl jasmonate. Plant Sci 128:1247-1258
11. Bailey B, Bae H, Strem MD, Mayolo GA, Guiltinan M, Verica JA, Maximova S, Bowers JH (2005b) Developmental expression of stress response genes in Theobroma cacao leaves and their response to Nep1 treatment and a compatible infection by Phytophthora megakarya. Plant Physiol Biochem 43:611-622
12. Bartley BGD (2005) The genetic diversity of cacao and its utilization. CAB International, Wallingford
13. Bayer C, Fay MF, De Bruijn AY, Savolainen V, Morton CM, Kubitzki K, Alverson WS, Chase MW (1999) Support for an expanded family concept of Malvaceae within a recircumscribed order Malvales: a combined analysis of plastid atpB and rbcL DNA sequences. Bot J Linn Soc 129:267-303
14. Bennett AB (2003) Out of the Amazon: Theobroma cacao enters the genomic era. Trends Plant Sci 8:561-563
15. Borrone JW, Kuhn DN, Schnell RJ (2004) Isolation, characterization, and development of WRKY genes as useful genetic markers in Theobroma cacao. Theor Appl Genet 109:495-507
16. Bowers JH, Bailey BA, Hebbar PK, Sanogo S, Lumsden RD (2001) The impact of plant diseases on worldwide chocolate production. http://www.plantmanagementnetwork.org/pub/php/ review/cacao/
17. Brown JS, Kuhn DN, Lopez U, Schnell RJ (2005) Resistance gene mapping for witches’ broom disease in Theobroma cacao L. in an F2 population using SSR markers and candidate genes. J Am Soc Hortic Sci 130:366-373
18. Charters YM, Wilkinson MJ (2000) The use of self-pollinated progenies as “in-groups” for the genetic characterization of cocoa germplasm. Theor Appl Genet 100:160-166
19. Chowdappa P, Brayford D, Smith J, Flood J (2003) Molecular discrimination of Phytophthora isolates on cocoa and their relationship with coconut, black pepper and bell pepper isolates based on rDNA repeat and AFLP fingerprints. Curr Sci 84:1235-1237
20. Clement D, Risterucci AM, Motamayor JC, N’Goran J, Lanaud C (2003a) Mapping QTL for yield components, vigor, and resistance to Phytophthorapalmivora in Theobroma cacao L. Genome 46:204-212
21. Clement D, Risterucci AM, Motamayor JC, Ngoran J, Lanaud C (2003b) Mapping quantitative trait loci for bean traits and ovule number in Theobroma cacao L. Genome 46:103-111
22. Clement D, Lanaud C, Sabau X, Fouet O, Le Cunff L, Ruiz E, Risterucci AM, Glaszmann JC, Piffanelli P (2004) Creation of BAC genomic resources for cocoa (Theobroma cacao L.) for physical mapping of RGA containing BAC clones. Theor Appl Genet 108:1627-1634
23. Coe SD, Coe MD (1996) The true history of chocolate. Thames and Hudson, New York
24. Couch JA, Zintel HA, Fritz PJ (1993) The genome of the tropical tree Theobroma cacao L. Mol Gen Genet 237:123-128
25. Crouzillat D, Phillips W, Fritz PJ, Petiard V (2000) Quantitative trait loci analysis in Theobroma cacao using molecular markers. Inheritance of polygenic resistance to Phytophthorapalmivora in two related cacao populations. Euphytica 114:25-36
26. Cruz M, Whitkus R, Gomez-Pompa A, Monta-Bravo L (1995) Origins of cacao cultivation. Nature 375:542-543
27. Cryer NC, Fenn MGE, Turnbull CJ, Wilkinson MJ (2006) Allelic size standards and reference genotypes to unify international cocoa (Theobroma cacao L.) microsatellite data. Genetic Resour Crop Evol, http://dx.doi.org/10.1007/s10722-005-1286-9
28. Day RK (1984) Population dynamics of cocoa pod borer Acrocercops cramerella: importance of host plant cropping cycle. In: Proc Int Conf on Cocoa and Coconuts, Kuala Lumpur, pp 1-9
29. de Arruda MC, Ferreira MA, Miller RN, Resende ML, Felipe MS (2003a) Nuclear and mitochondrial rDNA variability in Crinipellis perniciosa from different geographic origins and hosts. Mycol Res 107:25-37
30. de Arruda MC, Miller RN, Ferreira MASV, Felipe MS (2003b) Comparison of Crinipellis perniciosa isolates from Brazil by ERIC repetitive element sequence-based PCR genomic fingerprinting. Plant Pathol 52:236-244
31. Dias LAS (2001) Genetic improvement of cacao. http://ecoport.org/ep?searchtype=earticleview& earticleid=197
32. Dublin MP (1973) Phytogénétique-haploidie chez Theobroma cacao. CR Acad Sci Fr 276:757-759
33. Efombagn MIB, Marelli JP, Ducamp M, Cilas C, Nyasse S, Vefonge D (2004) Effects of fruiting traits on the field resistance of cocoa (Theobroma cacao L.) clonesto Phytophthora megakarya. Phytopathology 152:557-562
34. Emch M (2003) The human ecology of Mayan cacao farming in Belize. Human Ecol 31:111-132
35. Evans HC, Holmes KA, Reid AP (2003) Phylogeny of the frosty pod rot pathogen of cocoa. Plant Pathol 52:476-485
36. Faleiro FG, Pires JL, Monteiro WR, Lopes UV, Yamada MM, Piedra AG, Moura AD, Arevalo-Gardini EA, Marques J, Gramacho K, Faleiro A, Santos M (2004) Variability in cacao accessions from the Brazilian, Ecuadorian, and Peruvian Amazons based on molecular markers. Crop Breed Appl Biotechnol 4:227-233
37. Fang JY, Wetten A, Hadley P (2004) Cryopreservation of cocoa (Theobroma cacao L.) somatic embryos for long-term germplasm storage. Plant Sci 166:669-675
38. Figueira A, Alemanno L (2005) Theobroma cacao (cacao). In: Litz RE (ed) Biotechnology of fruit and nut crops. CAB International Biosciences, Wallingford, Oxon, pp 639-669
39. Figueira A, Janick J (1995) Somatic embryogenesis in cacao (Theobroma cacao L.). In: Newton R (ed) Somatic embryogenesis in woody plants, vol 2. Kluwer, Dordrecht, pp 291-310
40. Figueira A, Janick J, Goldsbrough P (1992) Genome size and DNA polymorphism in Theobroma cacao. J Am Hortic Sci 117:673-677
41. Figueira A, Janick J, Levy M, Goldsbrough P (1994) Reexamining the classification of Theobroma cacao L. using molecular markers. J Am Hortic Sci 119:1073-1082
42. Flament MH, Kebe I, Clement D, Pieretti I, Risterucci AM, N’Goran JA, Cilas C, Despreaux D, Lanaud C (2001) Genetic mapping of resistance factors to Phytophthora palmivora in cocoa. Genome 44:79-85
43. Florin B, Brulard E, Pétiard V (2000) In vitro cryopreservation of cacao genetic resources. In: Engelman F, Tagaki H (eds) Cryopreservation of tropical plant germplasm. Japanese International Research Centre for Agricultural Sciences and IPGRI, Rome, pp 344-347
44. Fritz PJ, Osei JK, Goodin MM, Furtek DB (1991) Molecular and biochemical markers for genetic analysis of Theobroma cacao. In: Proc Int Cocoa Res Conf, Kuala Lumpur, pp 391-400
45. Gomes LMC, Melo GRP, Faleiro FG, Silva SDM, Araujo RC, Bahia RC, Morales MG, Ahnert D (2000) Genetic diversity of Crinipellis perniciosa from the south region of Bahia-Brazil using RAPD molecular markers. Fitopatola Brasil 25:377
46. Guyton B, Lumsden R, Matlick BK (2003) Strategic plan for sustainable cocoa production. Man-ufact Confect 83:55-60
47. Hanna AD (1954) Application of a systemic insecticide by trunk implantation to control a mealybug vector of the cacao swollen shoot virus. Nature 173:730-731
48. Hervé L, Djiekpor E, Jacquemond M (1991) Characterization of the genome of cacao swollen shoot virus. J Gen Virol 72:1735-1739
49. Iwaro AD, Bekele FL, Butler DR (2003) Evaluation and utilisation of cacao (Theobroma cacao L.) germplasm at the International Cocoa Genebank, Trinidad. Euphytica 130:207-221
50. Johnson L (2003) INGENIC Workshop, cocoa genomics group. Gro Cocoa 4:4-5 (http://www.cabicommodities.org/acc/accrc/pdffiles/groc/groc.htm)
51. Jones PG, Allaway D, Gilmour DM, Harris C, Rankin D, Retzel ER, Jones CA (2002) Gene discovery and microarray analysis of cacao (Theobroma cacao L.) varieties. Planta 216:255-264
52. Keane PJ (1992) Diseases and pests of cocoa: an overview. Cocoa pest and disease management in Southeast Asia and Australasia. FAO Plant Prod Prot Pap 112:1-12
53. Kuhn DN, Schnell RJ (2005) Use of capillary array electrophoresis single strand conformational polymorphism analysis to estimate genetic diversity of candidate genes in germplasm collections. Meth Enzymol 395:238-258
54. Kuhn DN, Heath M, Wisser RJ, Meerow A, Brown JS, Lopes U, Schnell RJ (2003) Resistance gene homologues in Theobroma cacao as useful genetic markers. Theor Appl Genet 107:191-202
55. Kuhn DN, Borrone J, Meerow AW, Motamayor JC, Brown JS, Schnell RJ (2005) Single-strand conformation polymorphism analysis of candidate genes for reliable identification of alleles by capillary array electrophoresis. Electrophoresis 26:112-125
56. Lanaud C (1987a) Doubled haploids of cocoa (Theobroma cacao L.). I. Observations of fertility. Plant Breed 99:187-195
57. Lanaud C (1987b) Doubled haploids of cocoa (Theobroma cacao L.). II. Observations of monogenic and polygenic characters. Plant Breed 99:196-202
58. Lanaud C (1988a) Behavior in crossing of the haploids of cacao-trees (Theobroma cocoa). Can J Bot 66:1986-1992
59. Lanaud C (1988b) Origin of haploids and semigamyin Theobroma cacao L. Euphytica 38:221-228
60. Lanaud C, Kebe I, Risterucci AM, Clement D, N’Goran JKA, Grivet L, Tahi M, Cilas C, Pieretti I, Eskes AB, Despreaux D (1996) Mapping quantitative trait loci (QTL) for resistance to Phytophthora palmivora in T cacao. In: Proc 12th Int Cocoa Res Conf, Salvador, Bahia, pp 99-105
61. Lanaud C, Risterucci AM, Pieretti I, Falque M, Bouet A, Lagoda PJ (1999) Isolation and characterization of microsatellites in Theobroma cacao L. Mol Ecol 8:2141-2152
62. Lanaud C, Risterucci AM, Pieretti I, N’goran JAK, Fargeas D (2004) Characterisation and genetic mapping of resistance and defence gene analogs in cocoa (Theobroma cacao L.). Mol Breed 13:211-227
63. Lerceteau E, Robert T, Petiard V, Crouzillat D (1997) Evaluation of the extent of genetic variability among Theobroma cacao accessions using RAPD and RFLP markers. Theor Appl Genet 95:10-19
64. Li Z, Traore A, Maximova S, Guiltinan MJ (1998) Somatic embryogenesis and plant regeneration from floral explants of cacao (Theobroma cacao L.) using thidiazuron. In Vitro Cell Dev Biol-Plant 34:293-299
65. Marita JM, Nienhuuis J, Pires JL, Aitken WM (2001) Analysis of genetic diversity in Theobroma cacao with emphasis on witches’ broom disease resistance. Crop Sci 41:1305-1316
66. Maximova SN, Alemanno L, Young A, Ferriere N, Traore A, Guiltinan MJ (2002) Efficiency, genotypic variability, and cellular origin of primary and secondary somatic embryogenesis of Theobroma cacao L. In Vitro Cell Dev Biol-Plant 38:252-259
67. Maximova SN, Miller C, Antunez de Mayolo G, Pishak S, Young A, Guiltinan MJ (2003) Stable transformation of Theobroma cacao L. and influence of matrix attachment regions on GFP expression. Plant Cell Rep 21:872-883
68. Maximova SN, Marelli J-P, Young A, Pishak S, Verica JA, Guiltinan MJ (2006) Over-expression of a cacao class I chitinase gene in Theobroma cacao L. enhances resistance against the pathogen, Colletotrichum gloeosporioides. Planta 224(4):740-749
69. Morais R (2005) The Gnomes of cocoa. Forbes Magazine, New York, 14 March, pp 110-112
70. Motamayor JC, Risterucci AM, Lopez PA, Ortiz CF, Moreno A, Lanaud C (2002) Cacao domestication I: the origin of the cacao cultivated by the Mayas. Heredity 89:380-386
71. Motamayor JC, Risterucci AM, Heath M, Lanaud C (2003) Cacao domestication II: progenitor germplasm ofthe Trinitario cacao cultivar. Heredity 91:322-330
72. Motilal LA, Sounigo O, Thevenin JM, Howell MH, Pieretti I, Risterucci AM, Noyer JL, Lanaud C (2000) Theobroma cacao L.: genome map and QTLs for Phytophthora palmivora resistance. In: Proc 13th Annu Cocoa Res Conf, Kota Kinabalu
73. Muller E, Sackey S (2005) Molecular variability analysis of five new complete cacao swollen shoot virus genomic sequences. Arch Virol 150:53-66
74. Muller E, Jacquot E, Yot P (2001) Early detection of cacao swollen shoot virus using the polymerase chain reaction. J Virol Meth 93:15-22
75. Niella GR, Resende MLV, De Castro HA, Figueira AR, Silva SDM, Araujo IS, Gomes LMC, Faleiro FG (2000) Genetic diversity ofthe monosporic isolates of Crinipellis perniciosa from different Brazilian states, using RAPD markers. Fitopatol Brasil 25:400
76. Nyasse S, Despreaux D, Cilas C (2002) Validity of a leaf inoculation test to assess the resistance to Phytophthora megakarya in a cocoa (Theobroma cacao L.) diallel mating design. Euphytica 123:395-399
77. Opoku IY, Akrofi AY, Appiah AA (2002) Shade trees are alternative hosts of the cocoa pathogen Phytophthora megakarya. Crop Prot 21:629-634
78. Pereira JL, Ram A, Defigueiredo JM, Dealmeida LCC (1990) First occurrence of witches’ broom disease in the principal cocoa-growing region of Brazil. Trop Agric 67:188-189
79. Perry M, Power J, Lowe K, MR D (2000) Biolistic transformation of cacao (Theobroma cacao L.). Trop Agric 77:64-66
80. Phillips W (2003) Origin, biogeography, genetic diversity and taxonomic affinities of the cacao fungus Moniliophthora roreri as determined using molecular, phytopathological and morpho-physiological evidence. Ph D thesis, University of Reading.
81. Piasentin F, Klare-Repnik L (2004) Biodiversity conservation and cocoa agroforests. Gro Cocoa 5:7-8 (http://www.cabi-commodities.org/acc/accrc/pdffiles/groc/groc.htm)
82. Ploetz RC, Schnell RJ, Ying Z, Zheng Q, Olano CT, Johnson E, Motamayor JC (2005) Molecular diversity in Crinipellis perniciosa with AFLPs. Eur J Plant Pathol 111:317-326
83. Pound FJ (1940) Witches’ broom resistance in cacao. Trop Agric 17:6-8
84. Pugh T, Fouet O, Risterucci AM, Brottier P, Abouladze M, Deletrez C, Courtois B, Clement D, Larmande P, Ngoran JAK (2004) A new cacao linkage map based on codominant markers: development and integration of 201 new microsatellite markers. Theor Appl Genet 108:1151-1161
85. Purdy LH, Dickstein ER (1989) Theobroma cacao, a host for Agrobacterium tumefaciens. Plant Dis 73:638-639
86. Queiroz VT, Guimaraes CT, Anhert D, Schuster I, Daher RT, Pereira MG, Miranda VRM, Loguer-cio LL, Barros EG, Moreira MA (2003) Identification of a major QTL in cocoa (Theobroma cacao L.) associated with resistance to witches’ broom disease. Plant Breed 122:268-272
87. Rice RA, Greenberg R (2003) The chocolate tree: growing cacao in the forest. Nat His 112:36-43
88. Risterucci AM, Grivet L, Ngoran JA, Pieretti I, Flament MH, Lanaud C (2000) A high-density linkage map of Theobroma cacao L. Theor Appl Genet 101:948-955
89. Risterucci AM, Paulin D, Ducamp M, N’Goran JAK, Lanaud C (2003) Identification of QTLs related to cocoa resistance to three species of Phytophthora. Theor Appl Genet 108:168-174
90. Rodriguez Lopez CM, Wetten AC, Wilkinson MJ (2004) Detection and quantification of in vitro-culture induced chimerism using simple sequence repeat (SSR) analysis in Theobroma cacao (L.). Theor Appl Genet 110:157-166
91. Ronning CM, Schnell RJ, Kuhn DN (1995) Inheritance of random amplified polymorphic DNA (RAPD) markers in Theobroma cacao L. J Am Soc Hortic Sci 120:681-686
92. Ruf F, Zadi H (2003) Cocoa: from deforestation to reforestation. http://nationalzoo.si.edu/con-servationandscience/migratorybirds/research/cacao/ruf.cfm
93. Sain SL, Oduro KK, Furtek DB (1994) Genetic transformation of cocoa leaf cells using Agrobacterium tumefaciens. Plant Cell Tissue Organ Cult 37:342-351
94. Santos M, Albuquerque de Barros E, Tinoco M, Brasileiro A, Aragao F (2002) Repetitive somatic embryogenesis in cacao and optimisation of gene expression by particle bombardment. J Plant Biotechnol 4:71-76
95. Santos MO, Romano E, Yotoko K, Tinoco M, Dias B, Aragao F (2005) Characterisation of the cacao somatic embryogenesis receptor-like kinase (SERK) gene expressed during somatic embryogenesis. Plant Sci 168:723-729
96. Santoso D, Chaidamsari T, Wiryadiputra S, de Maagd RA (2004) Activity of Bacillus thuringiensis toxins against cocoa pod borer larvae. Pest Manag Sci 60:735-738
97. Saunders JA, Mischke S, Leamy EA, Hemeida AA (2004) Selection of international molecular standards for DNA fingerprinting of Theobroma cacao. Theor Appl Genet 110:41-47
98. Scarpari LM, Meinhardt LW, Mazzafera P, Pomella AWV, Schiavinato MA, Cascardo JCM, Pereira GAG (2005) Biochemical changes during the development of witches’ broom: the most important disease of cocoa in Brazil caused by Crinipellis perniciosa. J Exp Bot 56:865-877
99. Schnell RJ, Olano CT, Brown JS, Meerow AW, Cervantes-Martinez C, Nagai C, Motamayor JC (2005) Retrospective determination ofthe parental population of superior cacao (Theobroma cacao L.) seedlings and association of microsatellite alleles with productivity. J Am Soc Hortic Sci 130:181-190
100. Sereno M, Albuquerque P, Vencovsky R, Figueira A (2006) Genetic diversity and natural population structure of cacao (Theobroma cacao L.) from the Brazilian Amazon evaluated by microsatellite markers. Conser Genet 7(1):13-24
101. Soltis DE, Soltis PS, Albert VA, Oppenheimer DG, DePamphilis CW, Ma H, Frohlich MW, Theis-sen G (2002) Missing links: the genetic architecture of flower and floral diversification. Trends Plant Sci 7:22-31
102. Sondahl MR, Liu S, Bellato C, Bragin A (1993) Cacao somatic embryogenesis. Acta Hort 336:245-248
103. Sounigo O, Lachenaud P, Bastide P, Cilas C, N’Goran J, Lanaud C (2003) Assessment of the value of doubled haploids as progenitors in cocoa (Theobroma cacao L.) breeding. J Appl Genet 44:339-353
104. Sousa Silva CRS, Figueira A (2005) Phylogenetic analysis of Theobroma (Sterculiaceae) based on Kunitz-like trypsin inhibitor sequences. Plant Syst Evol 250:93-104
105. Swanson JD (2005) Flower development in Theobroma cacao L.: an assessment of morphological and molecular conservation of floral development between Arabidopsis thaliana and Theobroma cacao. Ph D Diss, Pennsylvania State University
106. Traore A (2000) Somatic embryogenesis, embryo conversion, micropropagation and factors affecting genetic transformation of Theobroma cacao L. Ph D thesis, Pennsylvania State University
107. Verica JA, Maximova SN, Strem MD, Carlson JE, Bailey BA, Guiltinan MJ (2004) Isolation of ESTs from cacao (Theobroma cacao L.) leaves treated with inducers of the defense response. Plant Cell Rep 23:404-413
108. Whitkus R, Delacruz M, Motabravo L, Gomezpompa A (1998) Genetic diversity and relationships of cacao (Theobroma cacao L.) in southern Mexico. Theor Appl Genet 96:621-627
109. Whitlock BA, Bayer C, Baum DA (2001) Phylogenetic relationships and floral evolution of the Byttnerioideae (“Sterculiaceae” or Malvaceae s.l.) based on sequences of the chloroplast gene, ndhF. Syst Bot 26:420-437
110. Wilde J, Waugh R, Powell W (1991) Genetic fingerprinting of Theobroma clones using randomly amplified polymorphic DNA markers. Theor Appl Genet 83:871-877
111. Wood GAR, Lass RA (1985) Cocoa, 4th edn. Longman Scientific and Technical, New York