Complete genome sequence of Veillonella atypica OK5, the first transformable strain in the species

Genome Announcements

Volumn 5, Issue 22, 2017, Pages

  Zhou, Peng ^a   Xie, Gary ^c   Li, Xiaoli ^a   Liu, Jinman ^a,d   Qi, Fengxia ^a,b  

^a UNIVERSITY OF OKLAHOMA COLLEGE OF MEDICINE   (United States)

^b UNIVERSITY OF OKLAHOMA HEALTH SCIENCES CENTER   (United States)

^c LOS ALAMOS NATIONAL LABORATORY   (United States)

^d PROCTER AND GAMBLE COMPANY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85020379997     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00391-17     Document Type: Article

References (14)

1. Kolenbrander PE, Palmer RJ, Jr, Rickard AH, Jakubovics NS, Chalmers NI, Diaz PI. 2006. Bacterial interactions and successions during plaque development. Periodontol 2000 42:47-79. https://doi.org/10.1111/j.1600-0757.2006.00187.x
2. Periasamy S, Kolenbrander PE. 2010. Central role of the early colonizer Veillonella sp. in establishing multispecies biofilm communities with initial, middle, and late colonizers of enamel. J Bacteriol 192:2965-2972. https://doi.org/10.1128/JB.01631-09
3. Zhou P, Liu J, Merritt J, Qi F. 2015. A YadA-like autotransporter, Hag1 in Veillonella atypica is a multivalent hemagglutinin involved in adherence to oral streptococci, Porphyromonas gingivalis, and human oral buccal cells. Mol Oral Microbiol 30:269-279. https://doi.org/10.1111/omi.12091
4. Zhou P, Liu J, Li X, Takahashi Y, Qi F. 2015. The sialic acid binding protein, Hsa, in Streptococcus gordonii DL1 also mediates intergeneric coaggregation with Veillonella species. PLoS One 10:e0143898. https://doi.org/10.1371/journal.pone.0143898
5. Liu J, Merritt J, Qi F. 2011. Genetic transformation of Veillonella parvula. FEMS Microbiol Lett 322:138-144. https://doi.org/10.1111/j.1574-6968.2011.02344.x
6. Liu J, Xie Z, Merritt J, Qi F. 2012. Establishment of a tractable genetic transformation system in Veillonella spp. Appl Environ Microbiol 78: 3488-3491. https://doi.org/10.1128/AEM.00196-12
7. Zhou P, Li X, Qi F. 2015. Establishment of a counter-selectable markerless mutagenesis system in Veillonella atypica. J Microbiol Methods 112: 70-72. https://doi.org/10.1016/j.mimet.2015.03.010
8. Tettelin H, Radune D, Kasif S, Khouri H, Salzberg SL. 1999. Optimized multiplex PCR: efficiently closing a whole-genome shotgun sequencing project. Genomics 62:500-507. https://doi.org/10.1006/geno.1999.6048
9. Markowitz VM, Chen IM, Palaniappan K, Chu K, Szeto E, Grechkin Y, Ratner A, Jacob B, Huang J, Williams P, Huntemann M, Anderson I, Mavromatis K, Ivanova NN, Kyrpides NC. 2012. IMG: the integrated microbial genomes database and comparative analysis system. Nucleic Acids Res 40:D115-D122. https://doi.org/10.1093/nar/gkr1044
10. Chen T, Yu WH, Izard J, Baranova OV, Lakshmanan A, Dewhirst FE. 2010. The human oral microbiome database: a web accessible resource for investigating oral microbe taxonomic and genomic information. Database (Oxford) 2010:baq013. https://doi.org/10.1093/database/baq013
11. Ogata H, Goto S, Sato K, Fujibuchi W, Bono H, Kanehisa M. 1999. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res 27:29-34. https://doi.org/10.1093/nar/27.1.29
12. Zhou P, Li X, Qi F. 2016. Identification and characterization of a heme biosynthesis locus in Veillonella. Microbiology 162:1735-1743. https://doi.org/10.1099/mic.0.000366
13. Rice PA, Baker TA. 2001. Comparative architecture of transposase and integrase complexes. Nat Struct Biol 8:302-307. https://doi.org/10.1038/86166
14. Aziz RK, Breitbart M, Edwards RA. 2010. Transposases are the most abundant, most ubiquitous genes in nature. Nucleic Acids Res 38: 4207-4217. https://doi.org/10.1093/nar/gkq140