Next-generation sequencing identification of pathogenic bacterial genes and their relationship with fecal indicator bacteria in different water sources in the Kathmandu Valley, Nepal

Science of the Total Environment

Volumn 601-602, Issue , 2017, Pages 278-284

  Ghaju Shrestha, Rajani ^a   Tanaka, Yasuhiro ^a   Malla, Bikash ^a   Bhandari, Dinesh ^b   Tandukar, Sarmila ^a,b   Inoue, Daisuke ^c,d   Sei, Kazunari ^c   Sherchand, Jeevan B ^b   Haramoto, Eiji ^a  

^a UNIVERSITY OF YAMANASHI   (Japan)

^b TRIBHUVAN UNIVERSITY   (Nepal)

^c KITASATO UNIVERSITY   (Japan)

^d OSAKA UNIVERSITY   (Japan)

Author keywords

16S rRNA gene; Acinetobacter; blaOXA23 like gene; Fecal indicator bacteria; Next generation sequencing

Indexed keywords

BACTERIA; ESCHERICHIA COLI; GENES; LANDFORMS; POLYMERASE CHAIN REACTION; POTABLE WATER; RNA; WATER;

16S RRNA GENE; ABUNDANCE RATIOS; ACINETOBACTERS; BACTERIAL CONTAMINATION; BACTERIAL DIVERSITY; FECAL INDICATOR BACTERIA; NEXT-GENERATION SEQUENCING; PATHOGENIC BACTERIUM;

WATER POLLUTION;

RNA 16S; DRINKING WATER;

DRINKING WATER; FECAL COLIFORM; GENE; PATHOGEN; POLYMERASE CHAIN REACTION; RNA; WATER POLLUTION; WATER RESOURCE;

16S RRNA GENE; ACINETOBACTER; ARCOBACTER; ARTICLE; BACTERIAL GENE; BACTERIUM CONTAMINATION; BACTERIUM IDENTIFICATION; BLAOXA23 GENE; CLOSTRIDIUM; CONTROLLED STUDY; ESCHERICHIA COLI; GENE AMPLIFICATION; GENE IDENTIFICATION; GENE SEQUENCE; GENETIC ASSOCIATION; LEACHING; MICROBIAL DIVERSITY; NEPAL; NEXT GENERATION SEQUENCING; NONHUMAN; POPULATION ABUNDANCE; PRIORITY JOURNAL; WATER CONTAMINATION; WATER SUPPLY; BACTERIUM; CLASSIFICATION; ENVIRONMENTAL MONITORING; FECES; HIGH THROUGHPUT SEQUENCING; MICROBIOLOGY; WATER QUALITY;

KATHMANDU VALLEY; NEPAL;

ACINETOBACTER; ARCOBACTER; BACTERIA (MICROORGANISMS); CLOSTRIDIUM; ESCHERICHIA COLI;

BACTERIA; DRINKING WATER; ENVIRONMENTAL MONITORING; FECES; GENES, BACTERIAL; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; NEPAL; RNA, RIBOSOMAL, 16S; WATER MICROBIOLOGY; WATER QUALITY;

EID: 85019940337     PISSN: 00489697     EISSN: 18791026     Source Type: Journal    
DOI: 10.1016/j.scitotenv.2017.05.105     Document Type: Article

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