PESI - A taxonomic backbone for Europe

Biodiversity Data Journal

Volumn 3, Issue 1, 2015, Pages

  de Jong, Yde ^a,b,c,d   Kouwenberg, Juliana ^a   Boumans, Louis ^e   Hussey, Charles ^f   Hyam, Roger ^g   Nicolson, Nicola ^h   Kirk, Paul ^h   Paton, Alan ^h   Michel, Ellinor ^f   Guiry, Michael D ⁱ   Boegh, Phillip S ^j   Pedersen, Henrik Arenlund ^k   Enghoff, Henrik ^k   von Raab Straube, Eckhard ^l   Güntsch, Anton ^l   Geoffroy, Marc ^l   Müller, Andreas ^l   Kohlbecker, Andreas ^l   Berendsohn, Walter ^l   Appeltans, Ward ^m   Arvanitidis, Christos ⁿ   Vanhoorne, Bart ^o   Declerck, Joram ^o   Vandepitte, Leen ^o   Hernandez, Francisco ^o   Nash, Róisín ^p,q   Costello, Mark John ^q,r   Ouvrard, David ^f   Bezard Falgas, Pascale ^s   Bourgoin, Thierry ^s   Wetzel, Florian Tobias ^d   Glöckler, Falko ^d   Korb, Günther ^d   Ring, Caroline ^d   Hagedorn, Gregor ^d   Häuser, Christoph ^d   Aktaç, Nihat ^t   Asan, Ahmet ^t   Ardelean, Adorian ^u   Borges, Paulo Alexandre Vieira ^v   Dhora, Dhimiter ^w   Khachatryan, Hasmik ^x   Malicky, Michael ^y   Ibrahimov, Shaig ^z   Tuzikov, Alexander ^aa   De Wever, Aaike ^c   Moncheva, Snejana ^ab   Spassov, Nikolai ^ac   Chobot, Karel ^ad   Popov, Alexi ^ac   Boršic, Igor ^ae   Sfenthourakis, Spyros ^af   Kõljalg, Urmas ^ag   Uotila, Pertti ^ah   Olivier, Gargominy ^s   Dauvin, Jean Claude ^ai   Tarkhnishvili, David ^aj   Chaladze, Giorgi ^aj   Tuerkay, Michael ^ak   Legakis, Anastasios ^al   Peregovits, László ^am   Gudmundsson, Gudmundur ^an   ólafsson, Erling ^an   Lysaght, Liam ^ao   Galil, Bella Sarah ^ap   Raimondo, Francesco M ^aq   Domina, Gianniantonio ^aq   Stoch, Fabio ^ar   Minelli, Alessandro ^as   Spungis, Voldermars ^at   Budrys, Eduardas ^au   Olenin, Sergej ^av   Turpel, Armand ^aw   Walisch, Tania ^aw   Krpach, Vladimir ^ax   Gambin, Marie Therese ^ay   Ungureanu, Laurentia ^az   Karaman, Gordan ^ba   Kleukers, Roy M J C ^bb   Stur, Elisabeth ^bc   Aagaard, Kaare ^bc   Valland, Nils ^bd   Moen, Toril Loennechen ^bd   Bogdanowicz, Wieslaw ^be   Tykarski, Piotr ^bf   Weslawski, Jan Marcin ^bg   Kedra, Monika ^bg   Martins, Antonio M de Frias ^v   Abreu, António Domingos ^bh   Silva, Ricardo ^bi   Medvedev, Sergei ^bj   Ryss, Alexander ^bj   Šimic, Smiljka ^bk   Marhold, Karol ^bl,bm   Stloukal, Eduard ^bn   Tome, Davorin ^bo   Ramos, Marian A ^bp   Valdés, Benito ^bq   Pina, Francisco ^bq   Kullander, Sven ^br   Telenius, Anders ^br   Gonseth, Yves ^bs   Tschudin, Pascal ^bs   Sergeyeva, Oleksandra ^bt   Vladymyrov, Volodymyr ^bt   Rizun, Volodymyr Bohdanovych ^bu   Raper, Chris ^f   Lear, Dan ^bv   Stoev, Pavel ^ac,bw   Penev, Lyubomir ^bw,bx   Rubio, Ana Casino ^c   Backeljau, Thierry ^c   Saarenmaa, Hannu ^b   Ulenberg, Sandrine ^bb   more..

^a UNIVERSITY OF AMSTERDAM   (Netherlands)

^b UNIVERSITY OF EASTERN FINLAND   (Finland)

^c ROYAL BELGIAN INSTITUTE OF NATURAL SCIENCES   (Belgium)

^d LEIBNIZ INSTITUTE FOR EVOLUTION AND BIODIVERSITY SCIENCE   (Germany)

^e UNIVERSITY OF OSLO   (Norway)

^f DEPARTMENT OF LIFE SCIENCES   (United Kingdom)

^g ROYAL BOTANIC GARDEN EDINBURGH   (United Kingdom)

^h ROYAL BOTANIC GARDENS   (United Kingdom)

ⁱ NATIONAL UNIVERSITY OF IRELAND   (Ireland)

^j DANISH METEOROLOGICAL INSTITUTE   (Denmark)

^k UNIVERSITY OF COPENHAGEN   (Denmark)

^l FREIE UNIVERSITÄT BERLIN   (Germany)

^m OBIS   (Belgium)

ⁿ INSTITUTE OF OCEANOGRAPHY   (Greece)

^o FLANDERS MARINE INSTITUTE VLIZ   (Belgium)

^p Atlantic Technological University   (Ireland)

^q Ecological Consultancy Services Ltd   (Ireland)

^r UNIVERSITY OF AUCKLAND   (New Zealand)

^s MUSÉUM NATIONAL D'HISTOIRE NATURELLE   (France)

^t TRAKYA UNIVERSITY   (Turkey)

^u MyNature Association   (Romania)

^v UNIVERSITY OF THE AZORES   (Portugal)

^w University of Shkodra   (Albania)

^x INSTITUTE OF ORGANIC CHEMISTRY   (Armenia)

^y Oberosterreichisches Landesmuseum   (Austria)

^z Ministry of Science and Education Republic of Azerbaijan   (Azerbaijan)

^aa UNITED INSTITUTE OF INFORMATICS PROBLEMS   (Belarus)

^ab INSTITUTE OF OCEANOLOGY   (Bulgaria)

^ac BULGARIAN ACADEMY OF SCIENCES   (Bulgaria)

^ad Nature Conservation Agency of the Czech Republic   (Czech Republic)

^ae State Institute for Nature Protection   (Croatia)

^af UNIVERSITY OF CYPRUS   (Cyprus)

^ag UNIVERSITY OF TARTU   (Estonia)

^ah UNIVERSITY OF HELSINKI   (Finland)

^ai UNIV LILLE   (France)

^aj ILIA STATE UNIVERSITY   (Georgia)

^ak SENCKENBERG RESEARCH INSTITUTE   (Germany)

^al UNIVERSITY OF ATHENS   (Greece)

^am DEPARTMENT OF ZOOLOGY   (Hungary)

^an ICELANDIC INSTITUTE OF NATURAL HISTORY   (Iceland)

^ao National Biodiversity Data Centre   (Ireland)

^ap NATIONAL INSTITUTE OF OCEANOGRAPHY   (Israel)

^aq UNIVERSITY OF PALERMO   (Italy)

^ar UNIVERSITY OF L'AQUILA   (Italy)

^as UNIVERSITY OF PADOVA   (Italy)

^at UNIVERSITY OF LATVIA   (Latvia)

^au VILNIUS UNIVERSITY   (Lithuania)

^av KLAIPEDA UNIVERSITY   (Lithuania)

^aw MUSÉE NATIONAL D HISTOIRE NATURELLE   (Luxembourg)

^ax Macedonian Museum of Natural History   (Macedonia)

^ay Malta Environment and Planning Authority   (Malta)

^az INSTITUTE OF CHEMISTRY   (Moldova)

^ba Montenegrin Academy of Sciences and Arts   (Montenegro)

^bb NATURALIS BIODIVERSITY CENTER   (Netherlands)

^bc NORWEGIAN UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Norway)

^bd Norwegian Biodiversity Information Centre   (Norway)

^be MUSEUM AND INSTITUTE OF ZOOLOGY   (Poland)

^bf UNIVERSITY OF WARSAW   (Poland)

^bg INSTITUTE OF OCEANOLOGY   (Poland)

^bh Estação de Biologia Marinha do Funchal Cais do Carvão   (Portugal)

^bi Naturdata   (Portugal)

^bj ZOOLOGICAL INSTITUTE   (Russian Federation)

^bk Centre for the Balkan Biodiversity Conservation   (Serbia)

^bl INSTITUTE OF BOTANY   (Slovakia)

^bm CHARLES UNIVERSITY   (Czech Republic)

^bn Faculty of Natural Sciences   (Slovakia)

^bo NATIONAL INSTITUTE OF BIOLOGY   (Slovenia)

^bp MUSEO NACIONAL DE CIENCIAS NATURALES   (Spain)

^bq UNIVERSITY OF SEVILLE   (Spain)

^br SWEDISH MUSEUM OF NATURAL HISTORY   (Sweden)

^bs Centre Suisse de Cartographie de la Faune   (Switzerland)

^bt A O KOVALEVSKY INSTITUTE OF BIOLOGY OF THE SOUTHERN SEAS OF RAS   (Russian Federation)

^bu INSTITUTE OF HYDROBIOLOGY   (Ukraine)

^bv THE LABORATORY   (United Kingdom)

^bw PENSOFT Publishers   (Bulgaria)

^bx INSTITUTE OF BIODIVERSITY AND ECOSYSTEM RESEARCH   (Bulgaria)

more..

Author keywords

AlgaeBase; Authority file; EU nomen; EUBON; Euro+Med PlantBase; European register of marine species; European taxonomic backbone; Fauna Europaea; Global names architecture; Index fungorum; INSPIRE; International Plant Names Index (IPNI); LifeWatch; Nomenclature; PESI; Taxonomic indexing; Taxonomy; ZooBank

Indexed keywords

EID: 85018594265     PISSN: None     EISSN: 13142828     Source Type: Journal    
DOI: 10.3897/BDJ.3.e5848     Document Type: Article

References (41)

1. Bénichou L, Martens K, Higley G, Gérard I, Dessein S, Duin D, Costello MJ (2012) European Journal of Taxonomy: A public collaborative project in Open Access scholarly communication. Scholarly and Research Communication 4 (1): 1-16
2. Berendsohn W (2010) Devising the EDIT Platform for Cybertaxonomy. Nimis P.L. & Vignes-Lebbe R. (ed.): Tools for identifying Biodiversity: Progress and Problems. [ISBN 978-88-8303-295-0]
3. Berendsohn W, Güntsch A (2012) OpenUp! Creating a cross-domain pipeline for natural history data. ZooKeys 209: 47-54. DOI: 10.3897/zookeys.209.3179
4. Borges PA, Gabriel R, Arroz A, Costa A, Cunha R, Silva L, Mendonça E, Martins AF, Reis F, Cardoso P (2010) The Azorean Biodiversity Portal: An internet database for regional biodiversity outreach. Systematics and Biodiversity 8 (4): 423-434. DOI: 10.108 0/14772000.2010.514306
5. Boumans L, Jong Yd (2009) ESF proposal: "Citizens Monitoring Biodiversity" recommended for funding. EDIT Newsletter 16: 15-16. [In English]. URL: http://www.etaxonomy. eu/files/newsletter16webhires.pdf
6. Catapano T (2010) TaxPub: An Extension of the NLM / NCBI Journal Publishing DTD for Taxonomic Descriptions. Proceedings of the Journal Article Tag Suite Conference 2010, 10 pp
7. CETAF (2004) Support for European Directory of Species Names (Memorandum of Understanding). CETAF Policy and Position Papers, 4 pp. URL: http://www.cetaf.org/ sites/default/files/documents/ cetaf_2004._support_for_european_directory_of_species_names_1.pdf
8. CETAF (2008) Position Paper on Biodiversity and Europe: the Contribution of Taxonomy and the European Taxonomic Facilities. CETAF Policy and Position Papers, 7 pp. URL: http://www.cetaf.org/sites/default/files/cetaf_position_paper_2008.pdf
9. Chavan V, Penev L (2011) The data paper: a mechanism to incentivize data publishing in biodiversity science. BMC Bioinformatics 12: S2. DOI: 10.1186/1471-2105-12-s15-s2
10. Ciardelli P, Kelbert P, Kohlbecker A, Hoffmann N, Güntsch A, Berendsohn WG (2009) The EDIT Platform for Cybertaxonomy and the taxonomic workflow: selected Components. Lecture Notes in Informatics (LNI) 154: 625-638
11. Costello M (2000) Developing Species Information Systems: The European Register of Marine Species (ERMS). Oceanography 13 (3): 48-55. DOI: 10.5670/oceanog.2000.09
12. Costello M (2009) Motivation of online data publication. BioScience 59 (5): 418-427. DOI: 10.1525/bio.2009.59.5.9
13. Costello M, Michener W, Gahegan M, Zhang Z, Bourne P (2013) Biodiversity data should be published, cited, and peer reviewed. Trends in Ecology & Evolution 28 (8): 454-461. DOI: 10.1016/j.tree.2013.05.002
14. Costello M, Appeltans W, Bailly N, Berendsohn W, Jong Yd, Edwards M, Froese R, Huettmann F, Los W, Mees J, Segers H, Bisby F (2014) Strategies for the sustainability of online open-access biodiversity databases. Biological Conservation 173: 155-165. DOI: 10.1016/j.biocon.2013.07.042
15. Costello M, Bouchet P, Boxshall G, Fauchald K, Gordon D, Hoeksema B, Poore GB, van Soest RM, Stöhr S, Walter TC, Vanhoorne B, Decock W, Appeltans W (2013) Global Coordination and Standardisation in Marine Biodiversity through the World Register of Marine Species (WoRMS) and Related Databases. PLoS ONE 8 (1): e51629. DOI: 10.1371/journal.pone.0051629
16. Costello MJ (2004) A new infrastructure for marine biology in Europe: marine biodiversity informatics. MarBEF Newsletter 1: 22-24. [In English]. URL: http:// www.marbef.org/modules.php?name=Downloads&d_op=getit&lid=368&cid=120
17. Costello MJ, Emblow CS, White RJ (Eds) (2001) European register of marine species: a check-list of the marine species in Europe and a bibliography of guides to their identification. Muséum national d'histoire naturelle, Paris, 463 pp. [In English]. URL: http s://researchspace.auckland.ac.nz/bitstream/handle/2292/19517/costelloERMS.pdf? sequence=2 [ISBN 2-85653-538-0]
18. Cuvelier D, Claus S, Appeltans W, Vanhoorne B, Vanden Berghe E, Costello MJ (2006) European Register of Marine Species (ERMS)-plans turning into reality ! MarBEF Newsletter 4: 14-15. URL: http://www.vliz.be/imisdocs/publications/99199.pdf
19. Dekeyzer S, Vandepitte L, Claus S, Deneudt K, Hernandez F (2014) The LifeWatch taxonomic backbone: supporting the marine biodiversity and ecosystem functioning research community. In: Naumov A, Sukhotin A, Martynova D, Berezina N, Berger N, Khalaman V (Eds) A variety of interactions in marine environment. 49th European Marine Biology Symposium, Zoological Institute Russian Academy of Sciences:, September 8-12, 2014. St. Petersburg, 115 pp. URL: http://www.vliz.be/imisdocs/ publications/265148.pdf
20. Eilers S, Raabe T (2015) Developing a concept for the cumulative assessment of anthropogenic impacts with regard to the Marine Strategy Frame Directive (MSFD). In: Eilers S, Ardelean A, Raabe T, Duerselen C-, Burkhard B, Hertz-Kleptow C, Dierschke V, Hill K, Hill R (Eds) Report on behalf of the German Federal Environment Agency (Umweltbundesamt), Project No. FKZ 3711 25 216. 281 pp. URL: https://kladia.info/ docs/index.php?title=project_details&projectid=2
21. Geijzendorffer I, Regan E, Pereira H, Brotons L, Brummitt N, Gavish Y, Haase P, Martin C, Mihoub J, Secades C, Schmeller D, Stoll S, Wetzel F, Walters M (2015) Bridging the gap between biodiversity data and policy reporting needs: An Essential Biodiversity Variables perspective. Journal of Applied Ecology n/a: n/a. DOI: 10.1111/1365-2664.12 417
22. Greuter W, Raab-Straube Ev (2005) Euro+Med Notulae, 1. Willdenowia 35 (2): 223-239. DOI: 10.3372/wi.35.35201
23. Güntsch A, Mathew C, Obst M, Vicario S, Haines R, Williams A, Jong Yd, Goble C (2014) A semi-automated workflow for biodiversity data retrieval, cleaning, and quality control. Biodiversity Data Journal 2: e4221. DOI: 10.3897/bdj.2.e4221
24. Hagedorn G, Mietchen D, Morris R, Agosti D, Penev L, Berendsohn W, Hobern D (2011) Creative Commons licenses and the non-commercial condition: Implications for the re-use of biodiversity information. ZooKeys 150: 127-149. DOI: 10.3897/ zookeys.150.2189
25. Hardisty A (2013) Horizon 2020: A call to forge biodiversity links. Nature 502 (7470): 171-171. DOI: 10.1038/502171d
26. Hoffmann A, Penner J, Vohland K, Cramer W, Doubleday R, Henle K, Kõljalg U, Kühn I, Kunin W, Negro JJ, Penev L, Rodríguez C, Saarenmaa H, Schmeller D, Stoev P, Sutherland W, Tuama éó, Wetzel F, Häuser C (2014) The need for an integrated biodiversity policy support process-Building the European contribution to a global Biodiversity Observation Network (EU BON). Nature Conservation 6: 49-65. DOI: 10.38 97/natureconservation.6.6498
27. Hussey C, Jong Yd, Remsen D (2008) Actual usage of biological nomenclature and its implications for data integrators;a national, regional and global perspective. Zootaxa 1950: 5-8. [In English]. URL: http://www.mapress.com/zootaxa/2008/f/zt01950p008.pdf
28. Jong Yd (2011) Standardising Taxonomic Data-The backbone of Europe's biodiversity management. International Innovation-Environment 05/2011: 74-76. [In English]. URL: http://dare.uva.nl/document/2/158511
29. Jong Yd, Verbeek M, Michelsen V, Per PBd, Los W, Steeman F, Bailly N, Basire C, Chylarecki P, Stloukal E, Hagedorn G, Wetzel F, Glöckler F, Kroupa A, Korb G, Hoffmann A, Häuser C, Kohlbecker A, Müller A, Güntsch A, Stoev P, Penev L (2014) Fauna Europaea-all European animal species on the web. Biodiversity Data Journal 2: e4034. [In English]. DOI: 10.3897/bdj.2.e4034
30. Patterson DJ, Cooper J, Kirk PM, Pyle RL, Remsen DP (2010) Names are key to the big new biology. Trends in Ecology & Evolution 25 (12): 686-691. DOI: 10.1016/ j.tree.2010.09.004
31. Penev L, Agosti D, Georgiev T, Catapano T, Miller J, Blagoderov V, Roberts D, Smith VS, Brake I, Ryrcroft S, Scott B, Johnson NF, Morris RA, Sautter G, Chavan V, Robertson T, Remsen D, Stoev P, Parr C, Knapp S, Kress WJ, Thompson FC, Erwin T (2010) Semantic tagging of and semantic enhancements to systematics papers: ZooKeys working examples. ZooKeys 50: 1-16. DOI: 10.3897/zookeys.50.538
32. Pereira H, Ferrier S, Walters M, Geller G, Jongman R, Scholes R, Bruford M, Brummitt N, Butchart S, Cardosa A, Coops N, Dullloo E, Faith D, Freyhof J, Gregory R, Heip C, Hoeft R, Hurtt G, Jetz W, Karp D, McGeoch M, Obura D, Onoda Y, Pettorelli N, Reyers B, Sayre R, Scharlemann J, Stuart S, Turak E, Walpole M, Wegmann M (2013) Essential biodiversity variables. Science 339: 277-278. DOI: 10.1126/science.1229931
33. Piwowar H, Vision T (2013) Data reuse and the open data citation advantage. PeerJ 1: e175. DOI: 10.7717/peerj.175
34. Price M (2014) The Consortium of European Taxonomic Facilities (CETAF): Exploring and Documenting Diversity in Nature. Taxon 63 (5): 1161-1163. DOI: 10.12705/635.27
35. Pyle R, Michel E (2008) ZooBank: Developing a nomenclatural tool for unifying 250 years of biological information. Zootaxa 1950: 39-50. URL: http://www.mapress.com/ zootaxa/2008/f/zt01950p050.pdf
36. Pyle R, Michel E (2009) Unifying nomenclature: ZooBank and Global Names Usage Bank. Bulletin of Zoological Nomenclature 66 (4): 298. URL: http://iczn.org/sites/ iczn.org/files/BZN%2066%284%29_Unifying_nomenclature.pdf
37. Quaranta M, Sommaruga A, Balzarini P, Felicioli A (2014) A new species for the bee fauna of Italy: Megachile sculpturalis continues its colonization of Europe. Bulletin of Insectology 67 (2): 287-293. URL: http://www.bulletinofinsectology.org/pdfarticles/ vol67-2014-287-293quaranta.pdf
38. Raab-Straube Ev, Raus T (2013) Euro+Med-Checklist Notulae, 1. Willdenowia 43 (1): 151-164. DOI: 10.3372/wi.43.43118
39. Smith V, Georgiev T, Stoev P, Biserkov J, Miller J, Livermore L, Baker E, Mietchen D, Couvreur T, Mueller G, Dikow T, Helgen K, Frank J, Agosti D, Roberts D, Penev L (2013) Beyond dead trees: integrating the scientific process in the Biodiversity Data Journal. Biodiversity Data Journal 1: e995. DOI: 10.3897/bdj.1.e995
40. Sonnenburg J, Bonas G, Schuch K (Eds) (2012) White Paper on opportunities and challenges in view of enhancing the EU cooperation with Eastern Europe, Central Asia and South Caucasus in Science, Research and Innovation. Prepared under the FP7 INCO-NET EECA Project, International Centre for Black Sea Studies, (ICBSS), Athens, 82 pp. URL: http://icbss.org/media/637_original.pdf [ISBN 978-960-6885-22-8]
41. Vanden Berghe E, Coro G, Bailly N, Fiorellato F, Aldemita C, Ellenbroek A, Pagano P (2015) Retrieving taxa names from large biodiversity data collections using a flexible matching workflow. Ecological Informatics 28: 29-41. DOI: 10.1016/j.ecoinf.2015.05.004