Rapid label-free identification of Klebsiella pneumoniae antibiotic resistant strains by the drop-coating deposition surface-enhanced Raman scattering method

Spectrochimica Acta - Part A: Molecular and Biomolecular Spectroscopy

Volumn 183, Issue , 2017, Pages 53-59

  Cheong, Youjin ^a   Kim, Young Jin ^a   Kang, Heeyoon ^a   Choi, Samjin ^a   Lee, Hee Joo ^a  

^a Kyung Hee University Hospital   (South Korea)

Author keywords

DCD SERS; Klebsiella pneumoniae; Loading profile; PCA; Raman spectroscopy

Indexed keywords

COATINGS; DEPOSITION; DROPS; ESCHERICHIA COLI; MULTIVARIANT ANALYSIS; RAMAN SCATTERING; RAMAN SPECTROSCOPY;

BACTERIAL IDENTIFICATIONS; CORRELATION COEFFICIENT; DCD-SERS; KLEBSIELLA PNEUMONIAE; LOADING PROFILES; MULTIVARIATE STATISTICAL METHOD; RELATIVE STANDARD DEVIATIONS; TIME-CONSUMING PROCEDURE;

SURFACE SCATTERING;

ANTIINFECTIVE AGENT;

ANTIBIOTIC RESISTANCE; CHEMISTRY; DRUG EFFECT; HUMAN; KLEBSIELLA INFECTION; KLEBSIELLA PNEUMONIAE; LIMIT OF DETECTION; MICROBIOLOGY; MULTIVARIATE ANALYSIS; PRINCIPAL COMPONENT ANALYSIS; PROCEDURES; RAMAN SPECTROMETRY; REPRODUCIBILITY; VIBRATION;

ANTI-BACTERIAL AGENTS; DRUG RESISTANCE, BACTERIAL; HUMANS; KLEBSIELLA INFECTIONS; KLEBSIELLA PNEUMONIAE; LIMIT OF DETECTION; MULTIVARIATE ANALYSIS; PRINCIPAL COMPONENT ANALYSIS; REPRODUCIBILITY OF RESULTS; SPECTRUM ANALYSIS, RAMAN; VIBRATION;

EID: 85018495465     PISSN: 13861425     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.saa.2017.04.044     Document Type: Article

References (38)

1. [1] Fair, R.J., Tor, Y., Antibiotics and bacterial resistance in the 21st century. Perspect. Med. Chem. 6 (2014), 25–64, 10.4137/PMC.S14459.Received.
2. [2] Jones, T.M., Johnson, S.W., Dimondi, V.P., Wilson, D.T., Focus on JNJ-Q2, a novel fluoroquinolone, for the management of community-acquired bacterial pneumonia and acute bacterial skin and skin structure infections. Infect. Drug Resist. 9 (2016), 119–128, 10.2147/IDR.S105620.
3. [3] Strahilevitz, J., Jacoby, G.A., Hooper, D.C., Robicsek, A., Plasmid-mediated quinolone resistance: a multifaceted threat. Clin. Microbiol. Rev. 22 (2009), 664–689, 10.1128/CMR.00016-09.
4. [4] Webber, M., Piddock, L.J., Quinolone resistance in Escherichia coli. Vet. Res. 32 (2001), 275–284, 10.1051/vetres:2001124.
5. [5] Paterson, D.L., Resistance in gram-negative bacteria: Enterobacteriaceae. Am. J. Med. 119 (2006), 20–28, 10.1016/j.amjmed.2006.03.013.
6. [6] Peleg, A.Y., Hooper, D.C., Hospital-acquired infections due to gram-negative bacteria. N. Engl. J. Med. 362 (2010), 1804–1813, 10.1056/NEJMra0904124.Hospital-Acquired.
7. [7] Arnold, R.S., Thom, K.A., Sharma, S., Phillips, M., Johnson, J.K., Morgan, D.J., Emergence of Klebsiella pneumoniae Carbapenemase (KPC) - producing bacteria. South. Med. J. 104 (2012), 40–45, 10.1097/SMJ.0b013e3181fd7d5a.Emergence.
8. [8] Lautenbach, E., Strom, B.L., Bilker, W.B., Patel, J.B., Edelstein, P.H., Fishman, N.O., Epidemiological investigation of fluoroquinolone resistance in infections due to extended-spectrum β-lactamase—producing Escherichia coli and Klebsiella pneumoniae. Clin. Infect. Dis. 33 (2001), 1288–1294, 10.1086/322667.
9. [9] Lautenbach, E., Metlay, J.P., Weiner, M.G., Bilker, W.B., Tolomeo, P., Mao, X., Nachamkin, I., Fishman, N.O., Gastrointestinal tract colonization with fluoroquinolone-resistant Escherichia coli in hospitalized patients: changes over time in risk factors for resistance. J. Infect. Dis. 30 (2010), 18–24, 10.1086/592703.Gastrointestinal.
10. [10] Rawat, D., Nair, D., Extended-spectrum beta-lactamases in gram negative bacteria. J. Global Infect. Dis. 2 (2010), 263–274, 10.4103/0974-777X.68531.
11. [11] Willemse-Erix, D., Bakker-Schut, T., Slagboom-Bax, F., Jachtenberg, J.W., Lemmens-Den Toom, N., Papagiannitsis, C.C., Kuntaman, K., Puppels, G., Van Belkum, A., Severin, J.A., Goessens, W., Maquelin, K., Rapid typing of extended-spectrum β-lactamase- and carbapenemase-producing Escherichia coli and Klebsiella pneumoniae isolates by use of spectracell RA. J. Clin. Microbiol. 50 (2012), 1370–1375, 10.1128/JCM.05423-11.
12. [12] Qi, Y., Wei, Z., Ji, S., Du, X., Shen, P., Yu, Y., ST11, the dominant clone of KPC-producing Klebsiella pneumoniae in China. J. Antimicrob. Chemother. 66 (2011), 307–312, 10.1093/jac/dkq431.
13. [13] Kusters, J.G., van Leeuwen, W.B., Maquelin, K., Blok, H.E.M., Willemse, H.F.M., de Graaf-Miltenburg, L.A.M., Fluit, A.C., Troelstra, A., Raman spectroscopy-based identification of nosocomial outbreaks of the clonal bacterium Escherichia coli. Eur. J. Clin. Microbiol. Infect. Dis. 35 (2015), 83–87, 10.1007/s10096-015-2511-x.
14. [14] Cheong, Y., Kim, Y.J., Kang, H., Choi, S., Lee, H.J., Label-free identification of antibiotic resistant isolates of living Escherichia coli: pilot study. Microsc. Res. Tech., 2016, 1–6, 10.1002/jemt.22785.
15. [15] Hamasha, K., Mohaidat, Q.I., Putnam, R.A., Woodman, R.C., Palchaudhuri, S., Rehse, S.J., Sensitive and specific discrimination of pathogenic and nonpathogenic Escherichia coli using Raman spectroscopy-a comparison of two multivariate analysis techniques. Biomed. Opt. Express 4 (2013), 481–489, 10.1364/BOE.4.000481.
16. [16] Walter, A., Reinicke, M., Bocklitz, T., Schumacher, W., Rösch, P., Kothe, E., Popp, J., Raman spectroscopic detection of physiology changes in plasmid-bearing Escherichia coli with and without antibiotic treatment. Anal. Bioanal. Chem. 400 (2011), 2763–2773, 10.1007/s00216-011-4819-4.
17. [17] Choi, S., Jung, G.B., Kim, K.S., Lee, G.-J., Park, H.-K., Medical applications of atomic force microscopy and Raman spectroscopy. J. Nanosci. Nanotechnol. 14 (2014), 71–97, 10.1166/jnn.2014.9112.
18. [18] Choi, S., Moon, S.W., Shin, J.-H., Park, H.-K., Jin, K.-H., Label-free biochemical analytic method for the early detection of adenoviral conjunctivitis using human tear biofluids. Anal. Chem. 86 (2014), 11093–11099, 10.1021/ac5025478.
19. [19] Kim, W., Lee, J.-C., Shin, J.-H., Jin, K.-H., Park, H.-K., Choi, S., Instrument-free synthesizable fabrication of label-free optical biosensing paper strips for the early detection of infectious keratoconjunctivitides. Anal. Chem. 88 (2016), 5531–5537, 10.1021/acs.analchem.6b01123.
20. [20] Kim, W., Shin, J.-H., Park, H.-K., Choi, S., A low-cost, monometallic, surface-enhanced Raman scattering-functionalized paper platform for spot-on bioassays. Sensors Actuators B Chem. 222 (2016), 1112–1118, 10.1016/j.snb.2015.08.030.
21. [21] Kim, W., Kim, Y.-H., Park, H.-K., Choi, S., Facile fabrication of a silver nanoparticle immersed, surface-enhanced Raman scattering imposed paper platform through successive ionic layer absorption and reaction for on-site bioassays. ACS Appl. Mater. Interfaces 7 (2015), 27910–27917, 10.1021/acsami.5b09982.
22. [22] Kim, Y.H., Chang, B., Choi, J.H., Park, H.K., Choi, S., Biochemical fingerprints of human papillomavirus infection and cervical dysplasia using cervical fluids: spectral pattern investigation. Microsc. Res. Tech. 79 (2016), 966–972, 10.1002/jemt.22728.
23. [23] Ahn, H.-W., Ha, H.-R., Lim, H.-N., Choi, S., Effects of aging procedures on the molecular, biochemical, morphological, and mechanical properties of vacuum-formed retainers. J. Mech. Behav. Biomed. Mater. 51 (2015), 356–366, 10.1016/j.jmbbm.2015.07.026.
24. [24] Choi, S., Park, H.-K., Min, G.E., Kim, Y.-H., Biochemical investigations of human papillomavirus-infected cervical fluids. Microsc. Res. Tech. 78 (2015), 200–206, 10.1002/jemt.22461.
25. [25] Shin, J.-H., Choi, J.H., Choi, S., Jung, G.B., Park, H.-K., Moon, S.W., Clinico-biochemical investigations of aging effects on normoglycemic and hyperglycemic murine retinal tissues. Microsc. Res. Tech. 1030 (2014), 1023–1030, 10.1002/jemt.22431.
26. [26] Kim, Y.-H., Jin, K.-H., Kim, J.H., Park, D.J., Choi, S., Park, H.-K., Molecular and chemical investigations and comparisons of biomaterials for ocular surface regeneration. Microsc. Res. Tech. 77 (2014), 183–188, 10.1002/jemt.22326.
27. [27] Lee, J.-C., Kim, W., Choi, S., Fabrication of a SERS-encoded microfluidic paper-based analytical chip for the point-of-assay of wastewater. Int. J. Precis. Eng. Manuf. Technol. 4 (2017), 221–226, 10.1007/s40684-017-0027-9.
28. [28] Lee, J., Kim, W., Park, H., Choi, S., Controlling successive ionic layer absorption and reaction cycles to optimize silver nanoparticle-induced localized surface plasmon resonance effects on the paper strip. Spectrochim. Acta Part A Mol. Spectrosc. 174 (2017), 37–43, 10.1016/j.saa.2016.11.016.
29. [29] Pierza, M., Sawatzki, J., Method and Device for Correcting a Spectrum, US 7,359,815 B2. 2008.
30. [30] Choi, S., Cheong, Y., Shin, J.H., Jin, K.H., Park, H.K., Inflammatory effect of monopolar radiofrequency treatment on collagen fibrils in rabbit skins. J. Biomed. Nanotechnol. 9 (2013), 1403–1407, 10.1166/jbn.2013.1526.
31. [31] Choi, S., Lee, S.C., Cheong, Y., Shin, J.H., Jin, K.H., Park, H.K., Nanostructural response of mitomycin C application on human scleral tissues. J. Biomed. Nanotechnol. 9 (2013), 1393–1397, 10.1166/jbn.2013.1510.
32. [32] Deegan, R.D., Bakajin, O., Dupont, T.F., Huber, G., Nagel, S.R., Witten, T.A., Capillary flow as the cause of ring stains from dried liquid drops. Nature 389 (1997), 827–829, 10.1038/39827.
33. [33] Zhang, D., Xie, Y., Mrozek, M.F., Ortiz, C., Davisson, V.J., Ben-Amotz, D., Raman detection of proteomic analytes. Anal. Chem. 75 (2003), 5703–5709, 10.1021/ac0345087.
34. [34] Le Ru, E.C., Blackie, E.J., Meyer, M., Etchegoin, P.G., Surface enhanced Raman scattering enhancement factors: a comprehensive study. J. Phys. Chem. C 111 (2007), 13794–13803, 10.1021/jp0687908.
35. [35] Liu, X., Shao, Y., Tang, Y., Yao, K.-F., Highly uniform and reproducible surface enhanced Raman scattering on air-stable metallic glassy nanowire array. Sci. Rep., 4, 2014, 5835, 10.1038/srep05835.
36. [36] Kim, W., Lee, S.H., Kim, S.H., Lee, J.-C., Moon, S.W., Yu, J.S., Choi, S., Highly reproducible Au-decorated ZnO nanorod array on a graphite sensor for classification of human aqueous humors. ACS Appl. Mater. Interfaces, 2017 (acsami.6b16130) 10.1021/acsami.6b16130.
37. [37] Etchegoin, P.G., Le Ru, E.C., A perspective on single molecule SERS: current status and future challenges. Phys. Chem. Chem. Phys. 10 (2008), 6079–6089, 10.1039/b809196j.
38. [38] Park, W.-H., Kim, Z.H., Charge transfer enhancement in the SERS of a single molecule. Nano Lett. 10 (2010), 4040–4048, 10.1021/nl102026p.