Community-acquired rhinovirus infection is associated with changes in the airway microbiome

Journal of Allergy and Clinical Immunology

Volumn 140, Issue 1, 2017, Pages 312-315.e8

  Kloepfer, Kirsten M ^a   Sarsani, Vishal K ^b   Poroyko, Valeriy ^c   Lee, Wai Ming ^d   Pappas, Tressa E ^d   Kang, Theresa ^d   Grindle, Kristine A ^d   Bochkov, Yury A ^d   Janga, Sarath Chandra ^b   Lemanske, Robert F ^d   Gern, James E ^d  

^a INDIANA UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b INDIANA UNIVERSITY   (United States)

^c UNIVERSITY OF CHICAGO   (United States)

^d UNIVERSITY OF WISCONSIN SCHOOL OF MEDICINE AND PUBLIC HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; IMMUNOGLOBULIN E; RNA 16S;

ACINETOBACTER; ACTINOBACTERIA; ACTINOMYCES; AIRWAY; ARTICLE; ASTHMA; ASYMPTOMATIC INFECTION; BACTEROIDETES; CARNOBACTERIACEAE; CHILD; COMMON COLD; COMMUNITY ACQUIRED INFECTION; CONTROLLED STUDY; CORYNEBACTERIUM; DISEASE EXACERBATION; DNA ISOLATION; DOLOSIGRANULUM; FIRMICUTES; FUSOBACTERIA; GEMELLA; GENE SEQUENCE; HAEMOPHILUS; HUMAN; HUMAN RHINOVIRUS A; HUMAN RHINOVIRUS B; HUMAN RHINOVIRUS C; MICROBIOME; MORAXELLA; NEISSERIA; NOSE MUCUS; PRIORITY JOURNAL; PROTEOBACTERIA; QUANTITATIVE ANALYSIS; RHINOVIRUS; RHINOVIRUS INFECTION; ROTHIA; STAPHYLOCOCCUS; STREPTOCOCCUS; VIRUS TYPING; METAGENOME; METAGENOMICS; MICROBIOLOGY; MICROFLORA; ORGANISMAL INTERACTION; PICORNAVIRUS INFECTION; RESPIRATORY MUCOSA; VIROLOGY;

COMMUNITY-ACQUIRED INFECTIONS; HUMANS; METAGENOME; METAGENOMICS; MICROBIAL INTERACTIONS; MICROBIOTA; PICORNAVIRIDAE INFECTIONS; RESPIRATORY MUCOSA; RHINOVIRUS;

EID: 85017513698     PISSN: 00916749     EISSN: 10976825     Source Type: Journal    
DOI: 10.1016/j.jaci.2017.01.038     Document Type: Article

References (19)

1. Olenec, J.P., Kim, W.K., Lee, W.M., Vang, F., Pappas, T.E., Salazar, L.E., et al. Weekly monitoring of children with asthma for infections and illness during common cold seasons. J Allergy Clin Immunol 125 (2010), 1001–1006.e1.
2. Kloepfer, K.M., Lee, W.M., Pappas, T.E., Kang, T.J., Vrtis, R.F., Evans, M.D., et al. Detection of pathogenic bacteria during rhinovirus infection is associated with increased respiratory symptoms and asthma exacerbations. J Allergy Clin Immunol 133 (2014), 1301–1307.e3.
3. Lee, W.M., Lemanske, R.F. Jr., Evans, M.D., Vang, F., Pappas, T., Gangnon, R., et al. Human rhinovirus species and season of infection determine illness severity. Am J Respir Crit Care Med 186 (2012), 886–891.
4. Nakagome, K., Bochkov, Y.A., Ashraf, S., Brockman-Schneider, R.A., Evans, M.D., Pasic, T.R., et al. Effects of rhinovirus species on viral replication and cytokine production. J Allergy Clin Immunol 134 (2014), 332–341.
5. Bogaert, D., Keijser, B., Huse, S., Rossen, J., Veenhoven, R., van Gils, E., et al. Variability and diversity of nasopharyngeal microbiota in children: a metagenomic analysis. PloS One, 6, 2011, e17035.
6. Laufer, A.S., Metlay, J.P., Gent, J.F., Fennie, K.P., Kong, Y., Pettigrew, M.M., Microbial communities of the upper respiratory tract and otitis media in children. MBio 2 (2011), e00245–e00310.
7. Teo, S.M., Mok, D., Pham, K., Kusel, M., Serralha, M., Troy, N., et al. The infant nasopharyngeal microbiome impacts severity of lower respiratory infection and risk of asthma development. Cell Host Microbe 17 (2015), 704–715.
8. Cox, D.W., Bizzintino, J., Ferrari, G., Khoo, S.K., Zhang, G., Whelan, S., et al. Human rhinovirus species C infection in young children with acute wheeze is associated with increased acute respiratory hospital admissions. Am J Respir Crit Care Med 188 (2013), 1358–1364.
9. Expert Panel Report 3 (EPR-3): Guidelines for the Diagnosis and Management of Asthma-summary report 2007. J Allergy Clin Immunol 120 (2007), S94–S138.
10. Proceedings of the ATS workshop on refractory asthma, current understanding, recommendations, and unanswered questions. American Thoracic Society. Am J Respir Crit Care Med 162 (2000), 2341–2351.
11. Kloepfer, K.M., Olenec, J.P., Lee, W.M., Liu, G., Vrtis, R.F., Roberg, K.A., et al. Increased H1N1 infection rate in children with asthma. Am J Respir Crit Care Med 185 (2012), 1275–1279.
12. Olenec, J.P., Kim, W.K., Lee, W.M., Vang, F., Pappas, T.E., Salazar, L.E., et al. Weekly monitoring of children with asthma for infections and illness during common cold seasons. J Allergy Clin Immunol 125 (2010), 1001–1006.e1.
13. Fierer, N., Leff, J.W., Adams, B.J., Nielsen, U.N., Bates, S.T., Lauber, C.L., et al. Cross-biome metagenomic analyses of soil microbial communities and their functional attributes. Proc Natl Acad Sci U S A 109 (2012), 21390–21395.
14. Liu, Z., Lozupone, C., Hamady, M., Bushman, F.D., Knight, R., Short pyrosequencing reads suffice for accurate microbial community analysis. Nucleic Acids Res, 35, 2007, e120.
15. Caporaso, J.G., Lauber, C.L., Walters, W.A., Berg-Lyons, D., Lozupone, C.A., Turnbaugh, P.J., et al. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc Natl Acad Sci U S A 108 (2011), 4516–4522.
16. Costello, E.K., Lauber, C.L., Hamady, M., Fierer, N., Gordon, J.I., Knight, R., Bacterial community variation in human body habitats across space and time. Science 326 (2009), 1694–1697.
17. Kozich, J.J., Westcott, S.L., Baxter, N.T., Highlander, S.K., Schloss, P.D., Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform. Appl Environ Microbiol 79 (2013), 5112–5120.
18. Schloss, P.D., Westcott, S.L., Ryabin, T., Hall, J.R., Hartmann, M., Hollister, E.B., et al. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75 (2009), 7537–7541.
19. Pruesse, E., Quast, C., Knittel, K., Fuchs, B.M., Ludwig, W., Peplies, J., et al. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35 (2007), 7188–7196.