European nucleotide archive in 2016

Nucleic Acids Research

Volumn 45, Issue D1, 2017, Pages D32-D36

  Toribio, Ana Luisa ^a   Alako, Blaise ^a   Amid, Clara ^a   Cerdeno Tarraga, Ana ^a   Clarke, Laura ^a   Cleland, Iain ^a   Fairley, Susan ^a   Gibson, Richard ^a   Goodgame, Neil ^a   Ten Hoopen, Petra ^a   Jayathilaka, Suran ^a   Kay, Simon ^a   Leinonen, Rasko ^a   Liu, Xin ^a   Martinez Villacorta, Josue ^a   Pakseresht, Nima ^a   Rajan, Jeena ^a   Reddy, Kethi ^a   Rosello, Marc ^a   Silvester, Nicole ^a   Smirnov, Dmitriy ^a   Vaughan, Daniel ^a   Zalunin, Vadim ^a   Cochrane, Guy ^a   more..

^a EUROPEAN BIOINFORMATICS INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOTIDE;

ACCESS TO INFORMATION; ARTICLE; BIOINFORMATICS; CITROBACTER RODENTIUM; DATA PROCESSING; ENTEROHEMORRHAGIC ESCHERICHIA COLI; ENTEROPATHOGENIC ESCHERICHIA COLI; INFORMATION CENTER; INFORMATION SERVICE; INTERNET; NEOSPORA CANINUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PUBLICATION; SCORPION; TOXOPLASMA GONDII; WEB BROWSER; DNA SEQUENCE; GENOMICS; MOLECULAR GENETICS; NUCLEIC ACID DATABASE; SEQUENCE ANALYSIS;

DATABASES, NUCLEIC ACID; GENOMICS; INTERNET; MOLECULAR SEQUENCE ANNOTATION; SEQUENCE ANALYSIS, DNA; SEQUENCE ANALYSIS, RNA;

EID: 85016152611     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkw1106     Document Type: Article

References (16)

1. Cochrane, G., Karsch-Mizrachi, I., Takagi, T. and International Nucleotide Sequence Database Collaboration (2016) The International nucleotide sequence database collaboration. Nucleic Acids Res., 44, D48-D50.
2. Mashima, J., Kodama, Y., Kosuge, T., Fujisawa, T., Katayama, T., Nagasaki, H., Okuda, Y., Kaminuma, E., Ogasawara, O., Okubo, K. et al. (2016) DNA data bank of Japan (DDBJ) progress report. Nucleic Acids Res., 44, D51-D57.
3. Clark, K., Karsch-Mizrachi, I., Lipman, D.J., Ostell, J. and Sayers, E.W. (2016) GenBank. Nucleic Acids Res., 44, D67-D72.
4. UniProt Consortium (2015) UniProt: a hub for protein information. Nucleic Acids Res., 43, D204-D212.
5. Yilmaz, P., Kottmann, R., Field, D., Knight, R., Cole, J.R., Amaral-Zettler, L., Gilbert, J.A., Karsch-Mizrachi, I., Johnston, A., Cochrane, G et al. (2011) Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifcations. Nat. Biotechnol., 29, 415-420.
6. Faulconbridge, A., Burdett, T., Brandizi, M., Gostev, M., Pereira, R., Vasant, D., Sarkans, U., Brazma, A. and Parkinson, H. (2014) Updates to BioSamples database at European Bioinformatics Institute. Nucleic Acids Res., 42, D50-D52.
7. Boratyn, G.M., Camacho, C., Cooper, P.S., Coulouris, G., Fong, A., Ma, N., Madden, T.L., Matten, W.T., McGinnis, S.D., Merezhuk, Y. et al. (2013) BLAST: a more effcient report with usability improvements. Nucleic Acids Res., 41, W29-W33.
8. Zhang, Z., Schwartz, S., Wagner, L. and Miller, W. (2000) A greedy algorithm for aligning DNA sequences. J. Comput. Biol., 7, 203-214.
9. Petryszak, R., Keays, M., Tang, Y.A., Fonseca, N.A., Barrera, E., Burdett, T., Füllgrabe, A., Fuentes, A.M., Jupp, S., Koskinen, S et al. (2016) Expression Atlas update-an integrated database of gene and protein expression in humans, animals and plants. Nucleic Acids Res., 44, D746-D752.
10. RNAcentral Consortium (2015) RNAcentral: an international database of ncRNA sequences. Nucleic Acids Res., 43, D123-D129.
11. Quast, C., Pruesse, E., Yilmaz, P., Gerken, J., Schweer, T., Yarza, P., Peplies, J. and Glöckner, F.O. (2013) The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res., 41, D590-D596.
12. Dreos, R., Ambrosini, G., Périer, R.C. and Bucher, P. (2015) The eukaryotic promoter database: expansion of EPDnew and new promoter analysis tools. Nucleic Acids Res., 43, D92-D96.
13. Ramaprasad, A., Mourier, T., Naeem, R., Malas, T.B., Moussa, E., Panigrahi, A., Vermont, S.J., Otto, T.D., Wastling, J. and Pain, A. (2015) Comprehensive evaluation of Toxoplasma gondii VEG and Neospora caninum LIV genomes with tachyzoite stage transcriptome and proteome defnes novel transcript features. PLoS One, 10, e0124473.
14. Buck, C.B., Van Doorslaer, K., Peretti, A., Geoghegan, E.M., Tisza, M.J., An, P., Katz, J.P., Pipas, J.M., McBride, A.A., Camus, A.C. et al. (2016) The Ancient Evolutionary History of Polyomaviruses. PLoS Pathog., 12, e1005574.
15. Seroussi, E., Cinnamon, Y., Yosef, S., Genin, O., Smith, J.G., Rafati, N., Bornelöv, S., Andersson, L. and Friedman-Einat, M. (2016) Identifcation of the long-sought leptin in chicken and duck: expression RT pattern of the highly GC-rich avian leptin fts an autocrine/paracrine RT rather than endocrine function. Endocrinology, 157, 737-51.
16. Petty, N.K., Bulgin, R., Crepin, V.F., Cerdeño-Tárraga, A.M., Schroeder, G.N., Quail, M.A., Lennard, N., Corton, C., Barron, A., Clark, L. et al. (2010) The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli. J. Bacteriol., 192, 525-538.