-
1
-
-
84976875034
-
PANTHER version 10: Expanded protein families and functions, and analysis tools
-
Mi, H., Poudel, S., Muruganujan, A., Casagrande, J.T. and Thomas, P.D. (2016) PANTHER version 10: expanded protein families and functions, and analysis tools. Nucleic Acids Res., 44, D336-D342.
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. D336-D342
-
-
Mi, H.1
Poudel, S.2
Muruganujan, A.3
Casagrande, J.T.4
Thomas, P.D.5
-
2
-
-
80053180122
-
Phylogenetic-based propagation of functional annotations within the gene ontology consortium
-
Gaudet, P., Livstone, M.S., Lewis, S.E. and Thomas, P.D. (2011) Phylogenetic-based propagation of functional annotations within the gene ontology consortium. Brief. Bioinform., 12, 449-462.
-
(2011)
Brief. Bioinform.
, vol.12
, pp. 449-462
-
-
Gaudet, P.1
Livstone, M.S.2
Lewis, S.E.3
Thomas, P.D.4
-
3
-
-
70349581595
-
PANTHER pathway: An ontology-based pathway database coupled with data analysis tools
-
Mi, H. and Thomas, P. (2009) PANTHER pathway: An ontology-based pathway database coupled with data analysis tools. Methods Mol. Biol., 563, 123-140.
-
(2009)
Methods Mol. Biol.
, vol.563
, pp. 123-140
-
-
Mi, H.1
Thomas, P.2
-
4
-
-
33747865461
-
Applications for protein sequence-function evolution data: MRNA/protein expression analysis and coding SNP scoring tools
-
Thomas, P.D, Kejariwal, A., Guo, N., Mi, H., Campbell, M.J., Muruganujan, A. and Lazareva-Ulitsky, B. (2006) Applications for protein sequence-function evolution data: MRNA/protein expression analysis and coding SNP scoring tools. Nucleic Acids Res., 34, W645-W650.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. W645-W650
-
-
Thomas, P.D.1
Kejariwal, A.2
Guo, N.3
Mi, H.4
Campbell, M.J.5
Muruganujan, A.6
Lazareva-Ulitsky, B.7
-
5
-
-
0141742293
-
PANTHER: A library of protein families and subfamilies indexed by function
-
Thomas, P.D., Campbell, M.J., Kejariwal, A., Mi, H., Karlak, B., Daverman, R., Diemer, K., Muruganujan, A. and Narechania, A. (2003) PANTHER: a library of protein families and subfamilies indexed by function. Genome Res., 13, 2129-2141.
-
(2003)
Genome Res.
, vol.13
, pp. 2129-2141
-
-
Thomas, P.D.1
Campbell, M.J.2
Kejariwal, A.3
Mi, H.4
Karlak, B.5
Daverman, R.6
Diemer, K.7
Muruganujan, A.8
Narechania, A.9
-
6
-
-
7444227970
-
Coding single-nucleotide polymorphisms associated with complex vs Mendelian disease: Evolutionary evidence for differences in molecular effects
-
Thomas, P.D. and Kejariwal, A. (2004) Coding single-nucleotide polymorphisms associated with complex vs Mendelian disease: evolutionary evidence for differences in molecular effects. Proc. Natl. Acad. Sci. U.S.A., 101, 15398-15403.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 15398-15403
-
-
Thomas, P.D.1
Kejariwal, A.2
-
7
-
-
84992406283
-
PANTHER-PSEP: Predicting disease-causing genetic variants using position-specifc evolutionary preservation
-
Tang, H. and Thomas, P.D. (2016) PANTHER-PSEP: Predicting disease-causing genetic variants using position-specifc evolutionary preservation. Bioinformatics, 32, 2230-2232.
-
(2016)
Bioinformatics
, vol.32
, pp. 2230-2232
-
-
Tang, H.1
Thomas, P.D.2
-
8
-
-
84892511644
-
Large-scale gene function analysis with the PANTHER classifcation system
-
Mi, H., Muruganujan, A., Casagrande, J.T. and Thomas, P.D. (2013) Large-scale gene function analysis with the PANTHER classifcation system. Nat. Protoc., 8, 1551-1566.
-
(2013)
Nat. Protoc.
, vol.8
, pp. 1551-1566
-
-
Mi, H.1
Muruganujan, A.2
Casagrande, J.T.3
Thomas, P.D.4
-
9
-
-
84946074739
-
The interpro protein families database: The classifcation resource after 15 years
-
Mitchell, A., Chang, H.Y., Daugherty, L., Fraser, M., Hunter, S., Lopez, R. et al. (2015) The interpro protein families database: The classifcation resource after 15 years. Nucleic Acids Res., 43, D213-D221.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D213-D221
-
-
Mitchell, A.1
Chang, H.Y.2
Daugherty, L.3
Fraser, M.4
Hunter, S.5
Lopez, R.6
-
10
-
-
84907692157
-
Big data and other challenges in the quest for orthologs
-
Sonnhammer, E.L., Gabaldón, T., Sousa da Silva, A.W., Martin, M., Robinson-Rechavi, M., Boeckmann, B., Thomas, P.D., Dessimoz, C. and Quest for Orthologs consortium. (2014) Big data and other challenges in the quest for orthologs. Bioinformatics, 30, 2993-2998.
-
(2014)
Bioinformatics
, vol.30
, pp. 2993-2998
-
-
Sonnhammer, E.L.1
Gabaldón, T.2
Sousa da Silva, A.W.3
Martin, M.4
Robinson-Rechavi, M.5
Boeckmann, B.6
Thomas, P.D.7
Dessimoz, C.8
-
11
-
-
84946069451
-
UniProt: A hub for protein information
-
UniProt Consortium. (2015) UniProt: A hub for protein information. Nucleic Acids Res., 43, D204-D212.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D204-D212
-
-
-
12
-
-
85016166168
-
Expansion of the gene ontology knowledgebase and resources
-
Gene Ontology Consortium. (2017) Expansion of the gene ontology knowledgebase and resources. Nucleic Acid Res., 45, doi:10.1093/nar/gkw1108.
-
(2017)
Nucleic Acid Res.
, vol.45
-
-
-
13
-
-
77952988108
-
A new generation of homology search tools based on probabilistic inference
-
Eddy, S.R. (2009) A new generation of homology search tools based on probabilistic inference. Genome Inform., 23, 205-211.
-
(2009)
Genome Inform.
, vol.23
, pp. 205-211
-
-
Eddy, S.R.1
-
14
-
-
13744252890
-
MAFFT version 5: Improvement in accuracy of multiple sequence alignment
-
Katoh, K., Kuma, K., Toh, H. and Miyata, T. (2005) MAFFT version 5: Improvement in accuracy of multiple sequence alignment. Nucleic Acids Res., 33, 511-518.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 511-518
-
-
Katoh, K.1
Kuma, K.2
Toh, H.3
Miyata, T.4
-
15
-
-
84976870113
-
SAM: Sequence alignment and modeling software system. Tech. Rep., Fabregat, A., Sidiropoulos, K., Garapati, P., Gillespie, M., Hausmann, K., Haw, R., Jassal, B., Jupe, S., Korninger, F., McKay, S. et al. (2016) the reactome pathway knowledgebase
-
Hughey, R., Karplus, K. and Krough, A. (2003) SAM: Sequence alignment and modeling software system. Tech. Re p., Fabregat, A., Sidiropoulos, K., Garapati, P., Gillespie, M., Hausmann, K., Haw, R., Jassal, B., Jupe, S., Korninger, F., McKay, S. et al. (2016) The reactome pathway knowledgebase. Nucleic Acids Res., 44, D481-D487.
-
(2003)
Nucleic Acids Res.
, vol.44
, pp. D481-D487
-
-
Hughey, R.1
Karplus, K.2
Krough, A.3
-
16
-
-
84871614593
-
VariBench: A benchmark database for variations
-
Sasidharan, Nair P. and Vihinen, M. (2013) VariBench: A benchmark database for variations. Hum. Mutat., 34, 42-49.
-
(2013)
Hum. Mutat.
, vol.34
, pp. 42-49
-
-
Sasidharan Nair, P.1
Vihinen, M.2
-
17
-
-
77951952886
-
Easy retrieval of single amino-acid polymorphisms and phenotype information using swissvar
-
Mottaz, A., David, F.P., Veuthey, A.L. and Yip, Y.L. (2010) Easy retrieval of single amino-acid polymorphisms and phenotype information using swissvar. Bioinformatics, 26, 851-852.
-
(2010)
Bioinformatics
, vol.26
, pp. 851-852
-
-
Mottaz, A.1
David, F.P.2
Veuthey, A.L.3
Yip, Y.L.4
|