메뉴 건너뛰기




Volumn 5, Issue 1, 2017, Pages

Microbiota fingerprints lose individually identifying features over time

Author keywords

Built environment; Forensics; Microbiota; Skin microbiota

Indexed keywords

GENOMIC DNA; RNA 16S;

EID: 85015839859     PISSN: None     EISSN: 20492618     Source Type: Journal    
DOI: 10.1186/s40168-016-0209-7     Document Type: Article
Times cited : (48)

References (30)
  • 1
    • 77950904616 scopus 로고    scopus 로고
    • Forensic identification using skin bacterial communities
    • Fierer N, et al. Forensic identification using skin bacterial communities. Proc Natl Acad Sci U S A. 2010;107:6477-81.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 6477-6481
    • Fierer, N.1
  • 2
    • 84956662971 scopus 로고    scopus 로고
    • Athletic equipment microbiota are shaped by interactions with human skin
    • Wood M, et al. Athletic equipment microbiota are shaped by interactions with human skin. Microbiome. 2015;3:25.
    • (2015) Microbiome , vol.3 , pp. 25
    • Wood, M.1
  • 3
    • 84862276328 scopus 로고    scopus 로고
    • Structure, function and diversity of the healthy human microbiome
    • Human Microbiome Project Consortium. Structure, function and diversity of the healthy human microbiome. Nature. 2012;486:207-14.
    • (2012) Nature , vol.486 , pp. 207-214
  • 4
    • 84903846612 scopus 로고    scopus 로고
    • Mobile phones carry the personal microbiome of their owners
    • Meadow JF, Altrichter AE, Green JL. Mobile phones carry the personal microbiome of their owners. Peer J. 2014;2:e447.
    • (2014) Peer J , vol.2
    • Meadow, J.F.1    Altrichter, A.E.2    Green, J.L.3
  • 5
    • 84907190237 scopus 로고    scopus 로고
    • Longitudinal analysis of microbial interaction between humans and the indoor environment
    • Lax S, et al. Longitudinal analysis of microbial interaction between humans and the indoor environment. Science. 2014;345:1048-52.
    • (2014) Science , vol.345 , pp. 1048-1052
    • Lax, S.1
  • 6
    • 85027926475 scopus 로고    scopus 로고
    • Indoor air bacterial communities in Hong Kong households assemble independently of occupant skin microbiomes
    • Wilkins D, Leung MHY, Lee PKH. Indoor air bacterial communities in Hong Kong households assemble independently of occupant skin microbiomes. Environ Microbiol. 2016;18:1754-63.
    • (2016) Environ Microbiol , vol.18 , pp. 1754-1763
    • Wilkins, D.1    Leung, M.H.Y.2    Lee, P.K.H.3
  • 7
    • 84930649544 scopus 로고    scopus 로고
    • Identifying personal microbiomes using metagenomic codes
    • Franzosa EA, et al. Identifying personal microbiomes using metagenomic codes. Proc Natl Acad Sci U S A. 2015;112:E2930-8.
    • (2015) Proc Natl Acad Sci U S A , vol.112 , pp. E2930-E2938
    • Franzosa, E.A.1
  • 8
    • 72949091232 scopus 로고    scopus 로고
    • Bacterial community variation in human body habitats across space and time
    • Costello EK, et al. Bacterial community variation in human body habitats across space and time. Science. 2009;326:1694-7.
    • (2009) Science , vol.326 , pp. 1694-1697
    • Costello, E.K.1
  • 9
    • 84878026801 scopus 로고    scopus 로고
    • Home life: factors structuring the bacterial diversity found within and between homes
    • Dunn RR, Fierer N, Henley JB, LeffJW, Menninger HL. Home life: factors structuring the bacterial diversity found within and between homes. PLoS ONE. 2013;8:e64133.
    • (2013) PLoS ONE , vol.8
    • Dunn, R.R.1    Fierer, N.2    Henley, J.B.3    Leff, J.W.4    Menninger, H.L.5
  • 10
    • 77955923362 scopus 로고    scopus 로고
    • Man's best friend? The effect of pet ownership on house dust microbial communities
    • Fujimura KE, et al. Man's best friend? The effect of pet ownership on house dust microbial communities. J Allergy Clin Immunol. 2010;126:410-412.e3.
    • (2010) J Allergy Clin Immunol , vol.126 , pp. 410.e3-412.e3
    • Fujimura, K.E.1
  • 11
    • 84873102288 scopus 로고    scopus 로고
    • Diversity, distribution and sources of bacteria in residential kitchens
    • Flores GE, et al. Diversity, distribution and sources of bacteria in residential kitchens. Environ Microbiol. 2012;15:588-96.
    • (2012) Environ Microbiol , vol.15 , pp. 588-596
    • Flores, G.E.1
  • 13
    • 79954506754 scopus 로고    scopus 로고
    • PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers
    • Walters WA, et al. PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers. Bioinformatics. 2011;27:1159-61.
    • (2011) Bioinformatics , vol.27 , pp. 1159-1161
    • Walters, W.A.1
  • 14
    • 80052301430 scopus 로고    scopus 로고
    • Bayesian community-wide culture-independent microbial source tracking
    • Knights D, et al. Bayesian community-wide culture-independent microbial source tracking. Nat Meth. 2011;8:761-3.
    • (2011) Nat Meth , vol.8 , pp. 761-763
    • Knights, D.1
  • 15
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: a new phylogenetic method for comparing microbial communities
    • Lozupone C, Knight R. UniFrac: a new phylogenetic method for comparing microbial communities. Appl Env Microbiol. 2005;71:8228-35.
    • (2005) Appl Env Microbiol , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 17
    • 84964920986 scopus 로고    scopus 로고
    • Walls talk: microbial biogeography of homes spanning urbanization
    • Ruiz-Calderon JF, et al. Walls talk: microbial biogeography of homes spanning urbanization. Sci Adv. 2016;2:e1501061.
    • (2016) Sci Adv , vol.2
    • Ruiz-Calderon, J.F.1
  • 18
    • 84920721220 scopus 로고    scopus 로고
    • Ecological succession and viability of human-associated microbiota on restroom surfaces
    • Gibbons SM, et al. Ecological succession and viability of human-associated microbiota on restroom surfaces. Appl Env Microbiol. 2015;81:765-73.
    • (2015) Appl Env Microbiol , vol.81 , pp. 765-773
    • Gibbons, S.M.1
  • 19
    • 0031284508 scopus 로고    scopus 로고
    • Species assemblages and indicator species: the need for a flexible asymmetrical approach
    • Dufrêne M, Legendre P. Species assemblages and indicator species: the need for a flexible asymmetrical approach. Ecol Monogr. 1997;67:345-66.
    • (1997) Ecol Monogr , vol.67 , pp. 345-366
    • Dufrêne, M.1    Legendre, P.2
  • 20
    • 84863981120 scopus 로고    scopus 로고
    • Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
    • Caporaso JG, et al. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J. 2012;6:1621-4.
    • (2012) ISME J , vol.6 , pp. 1621-1624
    • Caporaso, J.G.1
  • 21
    • 84884904719 scopus 로고    scopus 로고
    • UPARSE: highly accurate OTU sequences from microbial amplicon reads
    • Edgar RC. UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat Meth. 2013;10:996-8.
    • (2013) Nat Meth , vol.10 , pp. 996-998
    • Edgar, R.C.1
  • 22
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso JG, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Meth. 2010;7:335-6.
    • (2010) Nat Meth , vol.7 , pp. 335-336
    • Caporaso, J.G.1
  • 23
    • 33746061683 scopus 로고    scopus 로고
    • Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
    • DeSantis TZ, et al. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Env Microbiol. 2006;72:5069-72.
    • (2006) Appl Env Microbiol , vol.72 , pp. 5069-5072
    • DeSantis, T.Z.1
  • 24
    • 75249107844 scopus 로고    scopus 로고
    • PyNAST: a flexible tool for aligning sequences to a template alignment
    • Caporaso JG, et al. PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics. 2010;26:266-7.
    • (2010) Bioinformatics , vol.26 , pp. 266-267
    • Caporaso, J.G.1
  • 25
    • 77949718257 scopus 로고    scopus 로고
    • FastTree 2-approximately maximumlikelihood trees for large alignments
    • Price MN, Dehal PS, Arkin AP. FastTree 2-approximately maximumlikelihood trees for large alignments. PLoS ONE. 2010;5:e9490.
    • (2010) PLoS ONE , vol.5
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 26
    • 84866040222 scopus 로고    scopus 로고
    • A direct PCR approach to accelerate analyses of human-associated microbial communities
    • Flores GE, Henley JB, Fierer N. A direct PCR approach to accelerate analyses of human-associated microbial communities. PLoS ONE. 2012;7:e44563.
    • (2012) PLoS ONE , vol.7
    • Flores, G.E.1    Henley, J.B.2    Fierer, N.3
  • 27
    • 0000336139 scopus 로고
    • Regression models and life-tables
    • Cox DR. Regression models and life-tables. J R Stat Soc Ser B Methodol. 1972;34:187-220.
    • (1972) J R Stat Soc Ser B Methodol , vol.34 , pp. 187-220
    • Cox, D.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.