-
1
-
-
85008356255
-
-
Allaire JJ, Cheng J, Xie Y, McPherson J, Chang W, et al. 2015. rmarkdown: Dynamic documents for R. http: //rmarkdown.rstudio.com/
-
(2015)
Rmarkdown: Dynamic Documents for R.
-
-
Allaire, J.J.1
Cheng, J.2
Xie, Y.3
McPherson, J.4
Chang, W.5
-
2
-
-
85015187782
-
Changing our culture: Perspectives from young faculty
-
Allen G, Leek J. 2013. Changing our culture: Perspectives from young faculty. Amstat News, Dec. 1. http: //magazine.amstat.org/blog/2013/12/01/changing-our-culture/
-
(2013)
Amstat News, Dec.
, vol.1
-
-
Allen, G.1
Leek, J.2
-
3
-
-
80052526021
-
Public availability of published research data in high-impact journals
-
Alsheikh-Ali AA, Qureshi W, Al-Mallah MH, Ioannidis JP. 2011. Public availability of published research data in high-impact journals. PLOS ONE 6(9): E24357
-
(2011)
PLOS ONE
, vol.6
, Issue.9
, pp. e24357
-
-
Alsheikh-Ali, A.A.1
Qureshi, W.2
Al-Mallah, M.H.3
Ioannidis, J.P.4
-
4
-
-
85019292186
-
Science isn't broken
-
Aug. 19
-
Aschwanden C, King R. 2015. Science isn't broken. FiveThirtyEight Science, Aug. 19. http: //fivethirtyeight. com/features/science-isnt-broken/#part1
-
(2015)
FiveThirtyEight Science
-
-
Aschwanden, C.1
King, R.2
-
5
-
-
77957106002
-
Disclose all data in publications
-
Baggerly K. 2010. Disclose all data in publications. Nature 467(7314): 401
-
(2010)
Nature
, vol.467
, Issue.7314
, pp. 401
-
-
Baggerly, K.1
-
6
-
-
77951163222
-
Deriving chemosensitivity from cell lines: Forensic bioinformatics and reproducible research in high-throughput biology
-
Baggerly KA, Coombes KR. 2009. Deriving chemosensitivity from cell lines: Forensic bioinformatics and reproducible research in high-throughput biology. Ann. Appl. Stat 3: 1309-34
-
(2009)
Ann. Appl. Stat
, vol.3
, pp. 1309-1334
-
-
Baggerly, K.A.1
Coombes, K.R.2
-
7
-
-
84859169880
-
Drug development: Raise standards for preclinical cancer research
-
Begley CG, Ellis LM. 2012. Drug development: Raise standards for preclinical cancer research. Nature 483(7391): 531-33
-
(2012)
Nature
, vol.483
, Issue.7391
, pp. 531-533
-
-
Begley, C.G.1
Ellis, L.M.2
-
8
-
-
0043041931
-
WaveLab and reproducible research
-
ed. A Antoniadis, G Oppenheim, New York: Springer
-
Buckheit JB, Donoho DL. 1995. WaveLab and reproducible research. In Wavelets and Statistics, ed. A Antoniadis, G Oppenheim, pp. 55-81. New York: Springer
-
(1995)
Wavelets and Statistics
, pp. 55-81
-
-
Buckheit, J.B.1
Donoho, D.L.2
-
9
-
-
84876665206
-
Power failure: Why small sample size undermines the reliability of neuroscience
-
Button KS, Ioannidis JP, Mokrysz C, Nosek BA, Flint J, et al. 2013. Power failure: Why small sample size undermines the reliability of neuroscience. Nat. Rev. Neurosci. 14(5): 365-76
-
(2013)
Nat. Rev. Neurosci.
, vol.14
, Issue.5
, pp. 365-376
-
-
Button, K.S.1
Ioannidis, J.P.2
Mokrysz, C.3
Nosek, B.A.4
Flint, J.5
-
10
-
-
84893351797
-
NIH plans to enhance reproducibility
-
Collins FS, Tabak LA. 2014. NIH plans to enhance reproducibility. Nature 505(7485): 612
-
(2014)
Nature
, vol.505
, Issue.7485
, pp. 612
-
-
Collins, F.S.1
Tabak, L.A.2
-
11
-
-
84964495080
-
Peer review: Troubled from the start
-
Csiszar A. 2016. Peer review: Troubled from the start. Nat. News 532(7599): 306
-
(2016)
Nat. News
, vol.532
, Issue.7599
, pp. 306
-
-
Csiszar, A.1
-
12
-
-
84890544939
-
Discussion: Difficulties in making inferences about scientific truth from distributions of published p-values
-
Gelman A, O'Rourke K. 2014. Discussion: Difficulties in making inferences about scientific truth from distributions of published p-values. Biostatistics 15(1): 18-23
-
(2014)
Biostatistics
, vol.15
, Issue.1
, pp. 18-23
-
-
Gelman, A.1
O'Rourke, K.2
-
13
-
-
77955801615
-
Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
-
Goecks J, Nekrutenko A, Taylor J. 2010. Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol. 11(8): R86
-
(2010)
Genome Biol.
, vol.11
, Issue.8
, pp. R86
-
-
Goecks, J.1
Nekrutenko, A.2
Taylor, J.3
-
15
-
-
79955753954
-
Case studies in reproducibility
-
Hothorn T, Leisch F. 2011. Case studies in reproducibility. Brief. Bioinform. 12(3): 288-300
-
(2011)
Brief. Bioinform.
, vol.12
, Issue.3
, pp. 288-300
-
-
Hothorn, T.1
Leisch, F.2
-
16
-
-
22144431885
-
Contradicted and initially stronger effects in highly cited clinical research
-
Ioannidis JP. 2005a. Contradicted and initially stronger effects in highly cited clinical research. JAMA 294(2): 218-28
-
(2005)
JAMA
, vol.294
, Issue.2
, pp. 218-228
-
-
Ioannidis, J.P.1
-
17
-
-
33846563409
-
Why most published research findings are false
-
Ioannidis JP. 2005b.Why most published research findings are false. PLOS Med. 2(8): E124
-
(2005)
PLOS Med.
, vol.2
, Issue.8
, pp. e124
-
-
Ioannidis, J.P.1
-
18
-
-
84908350439
-
How to make more published research true
-
Ioannidis JP. 2014. How to make more published research true. PLOS Med. 11(10): E1001747
-
(2014)
PLOS Med.
, vol.11
, Issue.10
, pp. e1001747
-
-
Ioannidis, J.P.1
-
19
-
-
59149088407
-
Repeatability of published microarray gene expression analyses
-
Ioannidis JP, Allison DB, Ball CA, Coulibaly I, Cui X, et al. 2009. Repeatability of published microarray gene expression analyses. Nat. Genet. 41(2): 149-55
-
(2009)
Nat. Genet.
, vol.41
, Issue.2
, pp. 149-155
-
-
Ioannidis, J.P.1
Allison, D.B.2
Ball, C.A.3
Coulibaly, I.4
Cui, X.5
-
20
-
-
85015232057
-
People in positions of power that don't understand statistics are a big problem for genomics
-
Irizarry R. 2012. People in positions of power that don't understand statistics are a big problem for genomics. Simply Statistics Blog, Apr. 27. http: //simplystatistics.org/2012/04/27/people-in-positionsof- power-that-dont-understand/
-
(2012)
Simply Statistics Blog, Apr.
, vol.27
-
-
Irizarry, R.1
-
21
-
-
84890465866
-
An estimate of the science-wise false discovery rate and application to the top medical literature
-
Jager L, Leek J. 2014. An estimate of the science-wise false discovery rate and application to the top medical literature. Biostatistics 15(1): 1
-
(2014)
Biostatistics
, vol.15
, Issue.1
, pp. 1
-
-
Jager, L.1
Leek, J.2
-
22
-
-
84978818608
-
Ten simple rules for effective statistical practice
-
Kass RE, Caffo BS, Davidian M, Meng X-L, Yu B, Reid N. 2016. Ten simple rules for effective statistical practice. PLOS Comput. Biol. 12(6): E1004961
-
(2016)
PLOS Comput. Biol.
, vol.12
, Issue.6
, pp. e1004961
-
-
Kass, R.E.1
Caffo, B.S.2
Davidian, M.3
Meng, X.-L.4
Yu, B.5
Reid, N.6
-
23
-
-
35648976155
-
An introduction to the dataverse network as an infrastructure for data sharing
-
King G. 2007. An introduction to the dataverse network as an infrastructure for data sharing. Sociol. Methods Res. 36(2): 173-99
-
(2007)
Sociol. Methods Res.
, vol.36
, Issue.2
, pp. 173-199
-
-
King, G.1
-
24
-
-
84901716350
-
Investigating variation in replicability: A "Many Labs" replication project
-
Klein RA, Ratliff KA, Vianello M, Adams RB Jr., Bahník ? S, et al. 2014. Investigating variation in replicability: A "Many Labs" replication project. Soc. Psychol. 45: 142-52
-
(2014)
Soc. Psychol.
, vol.45
, pp. 142-152
-
-
Klein, R.A.1
Ratliff, K.A.2
Vianello, M.3
Adams, R.B.4
Bahník, S.5
-
25
-
-
85015165325
-
A summary of the evidence that most published research is false
-
Leek JT. 2013. A summary of the evidence that most published research is false. Simply Statistics Blog, Dec. 16. http: //simplystatistics.org/2013/12/16/a-summary-of-the-evidence-that-most-publishedresearch- is-false/
-
(2013)
Simply Statistics Blog, Dec.
, vol.16
-
-
Leek, J.T.1
-
26
-
-
85015251749
-
Why the three biggest positive contributions to reproducible research are the iPython Notebook, knitr, and Galaxy
-
Leek JT. 2014. Why the three biggest positive contributions to reproducible research are the iPython Notebook, knitr, and Galaxy. Simply Statistics Blog, Sep. 4. http: //simplystatistics.org/2014/09/04/whythe- three-biggest-positive-contributions-to-reproducible-research-are-the-ipython-notebookknitr- And-galaxy/
-
(2014)
Simply Statistics Blog, Sep.
, vol.4
-
-
Leek, J.T.1
-
29
-
-
84928801163
-
Statistics: P values are just the tip of the iceberg
-
Leek JT, Peng RD. 2015. Statistics: P values are just the tip of the iceberg. Nature 520(7549): 612
-
(2015)
Nature
, vol.520
, Issue.7549
, pp. 612
-
-
Leek, J.T.1
Peng, R.D.2
-
31
-
-
84877752060
-
A survey on data reproducibility in cancer research provides insights into our limited ability to translate findings from the laboratory to the clinic
-
Mobley A, Linder SK, Braeuer R, Ellis LM, Zwelling L. 2013. A survey on data reproducibility in cancer research provides insights into our limited ability to translate findings from the laboratory to the clinic. PLOS ONE 8(5): E63221
-
(2013)
PLOS ONE
, vol.8
, Issue.5
, pp. e63221
-
-
Mobley, A.1
Linder, S.K.2
Braeuer, R.3
Ellis, L.M.4
Zwelling, L.5
-
32
-
-
84865226981
-
Next-generation sequencing data interpretation: Enhancing reproducibility and accessibility
-
Nekrutenko A, Taylor J. 2012. Next-generation sequencing data interpretation: Enhancing reproducibility and accessibility. Nat. Rev. Genet. 13(9): 667-72
-
(2012)
Nat. Rev. Genet.
, vol.13
, Issue.9
, pp. 667-672
-
-
Nekrutenko, A.1
Taylor, J.2
-
34
-
-
84933567354
-
Promoting an open research culture: Author guidelines for journals could help to promote transparency, openness, and reproducibility
-
Nosek B, Alter G, Banks G, Borsboom D, Bowman S, et al. 2015. Promoting an open research culture: Author guidelines for journals could help to promote transparency, openness, and reproducibility. Science 348(6242): 1422
-
(2015)
Science
, vol.348
, Issue.6242
, pp. 1422
-
-
Nosek, B.1
Alter, G.2
Banks, G.3
Borsboom, D.4
Bowman, S.5
-
36
-
-
84940513037
-
Estimating the reproducibility of psychological science
-
Open Science Collaboration
-
Open Science Collaboration. 2015. Estimating the reproducibility of psychological science. Science 349: 6251
-
(2015)
Science
, vol.349
, pp. 6251
-
-
-
37
-
-
85015149719
-
A statistical definition for reproducibility and replicability
-
Patil P, Peng RD, Leek JT. 2016a. A statistical definition for reproducibility and replicability. Cold Spring Harb. Labs J. http: //biorxiv.org/content/early/2016/07/29/066803
-
(2016)
Cold Spring Harb. Labs J.
-
-
Patil, P.1
Peng, R.D.2
Leek, J.T.3
-
38
-
-
84980042504
-
What should researchers expect when they replicate studies? A statistical view of replicability in psychological science
-
Patil P, Peng RD, Leek JT. 2016b.What should researchers expect when they replicate studies? A statistical view of replicability in psychological science. Perspect. Psychol. Sci. 11: 539-44
-
(2016)
Perspect. Psychol. Sci.
, vol.11
, pp. 539-544
-
-
Patil, P.1
Peng, R.D.2
Leek, J.T.3
-
39
-
-
70149102312
-
Reproducible research and biostatistics
-
Peng RD. 2009. Reproducible research and biostatistics. Biostatistics 10(3): 405-8
-
(2009)
Biostatistics
, vol.10
, Issue.3
, pp. 405-408
-
-
Peng, R.D.1
-
40
-
-
82755174123
-
Reproducible research in computational science
-
Peng RD. 2011. Reproducible research in computational science. Science 334(6060): 1226-27
-
(2011)
Science
, vol.334
, Issue.6060
, pp. 1226-1227
-
-
Peng, R.D.1
-
42
-
-
34247481878
-
IPython: A system for interactive scientific computing
-
Pérez F, Granger BE. 2007. IPython: A system for interactive scientific computing. Comput. Sci. Eng. 9(3): 21-29
-
(2007)
Comput. Sci. Eng.
, vol.9
, Issue.3
, pp. 21-29
-
-
Pérez, F.1
Granger, B.E.2
-
43
-
-
33750727368
-
Genomic signatures to guide the use of chemotherapeutics
-
Potti A, Dressman HK, Bild A, Riedel RF, Chan G, et al. 2006. Genomic signatures to guide the use of chemotherapeutics. Nat. Med. 12(11): 1294-300
-
(2006)
Nat. Med.
, vol.12
, Issue.11
, pp. 1294-1300
-
-
Potti, A.1
Dressman, H.K.2
Bild, A.3
Riedel, R.F.4
Chan, G.5
-
44
-
-
80055088241
-
Believe it or not: Howmuch can we rely on published data on potential drug targets?
-
Prinz F, Schlange T, Asadullah K. 2011. Believe it or not: Howmuch can we rely on published data on potential drug targets? Nat. Rev. Drug Discov. 10(9): 712-12
-
(2011)
Nat. Rev. Drug Discov.
, vol.10
, Issue.9
, pp. 712
-
-
Prinz, F.1
Schlange, T.2
Asadullah, K.3
-
45
-
-
77956104669
-
Growth in a time of debt
-
Rogoff K, Reinhart C. 2010. Growth in a time of debt. Am. Econ. Rev. 100(2): 573-8
-
(2010)
Am. Econ. Rev.
, vol.100
, Issue.2
, pp. 573-578
-
-
Rogoff, K.1
Reinhart, C.2
-
46
-
-
84879254020
-
Toward reproducible computational research: An empirical analysis of data and code policy adoption by journals
-
Stodden V, Guo P, Ma Z. 2013. Toward reproducible computational research: An empirical analysis of data and code policy adoption by journals. PLOS ONE 8(6): E67111
-
(2013)
PLOS ONE
, vol.8
, Issue.6
, pp. e67111
-
-
Stodden, V.1
Guo, P.2
Ma, Z.3
-
47
-
-
84941337161
-
Data carpentry: Workshops to increase data literacy for researchers
-
Teal TK, Cranston KA, Lapp H,White E, Wilson G, et al. 2015. Data carpentry: Workshops to increase data literacy for researchers. Int. J. Digit. Curation 10(1): 135-43
-
(2015)
Int. J. Digit. Curation
, vol.10
, Issue.1
, pp. 135-143
-
-
Teal, T.K.1
Cranston, K.A.2
Lapp, H.3
White, E.4
Wilson, G.5
-
48
-
-
84976291730
-
The ASA's statement on p-values: Context, process, and purpose
-
Wasserstein RL, Lazar NA. 2016. The ASA's statement on p-values: Context, process, and purpose. Am. Stat. 70: 129-33
-
(2016)
Am. Stat.
, vol.70
, pp. 129-133
-
-
Wasserstein, R.L.1
Lazar, N.A.2
-
49
-
-
33750818722
-
Software carpentry
-
Wilson G. 2006. Software carpentry. Comput. Sci. Eng. 8: 66-69
-
(2006)
Comput. Sci. Eng.
, vol.8
, pp. 66-69
-
-
Wilson, G.1
|