Metagenomeassembled draft genome sequence of a novel microbial Stenotrophomonas maltophilia strain isolated from Caenorhabditis remanei tissue

Genome Announcements

Volumn 5, Issue 7, 2017, Pages

  Fierst, Janna L ^a   Murdock, Duncan A ^a   Thanthiriwatte, Chamali ^a   Willis, John H ^b   Phillips, Patrick C ^b  

^a UNIVERSITY OF ALABAMA   (United States)

^b UNIVERSITY OF OREGON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85014634138     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.01646-16     Document Type: Article

References (16)

1. Minkwitz A, Berg G. 2001. Comparison of antifungal activities and 16S ribosomal sequences of clinical and environmental isolates of Stenotrophomonas maltophilia. J Clin Microbiol 39:139-145. https://doi.org/10.1128/JCM.39.1.139-145.2001.
2. Sader HS, Jones RN. 2005. Antimicrobial susceptibility of uncommonly isolated non-entering Gram-negative bacilli. Int J Antimicrob Agents 25:95-109. https://doi.org/10.1016/j.ijantimicag.2004.10.002.
3. Lockhart SR, Abramson MA, Beekmann SE, Gallagher G, Riedel S, Diekema DJ, Quinn JP, Doern GV. 2007. Antimicrobial resistance among Gram-negative bacilli causing infections in intensive care unit patients in the United States between 1993 and 2004. J Clin Microbiol 45: 3352-3359. https://doi.org/10.1128/JCM.01284-07.
4. Crossman LC, Gould VC, Dow JM, Vernikos GS, Okazaki A, Sebaihia M, Saunders D, Arrowsmith C, Carver T, Peters N, Adlem E, Kerhornou A, Lord A, Murphy L, Seeger K, Squares R, Rutter S, Quail MA, Rajandream MA, Harris D, Churcher C, Bentley SD, Parkhill J, Thomson NR, Avison MB. 2008. The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants. Genome Biol 9:R74. https://doi.org/10.1186/gb-2008-9-4-r74.
5. De Oliveira-Garcia D, Dall'Agnol M, Rosales M, Azzuz ACGS, Alcántara N, Martinez MB, Girón JA. 2003. Fimbriae and adherence of Stenotrophomonas maltophilia to epithelial cells and to abiotic surfaces. Cell Microbiol 5:625-636. https://doi.org/10.1046/j.1462-5822.2003.00306.x.
6. Rae R, Riebesell M, Dinkelacker I, Wang Q, Herrmann M, Weller AM, Dieterich C, Sommer RJ. 2008. Isolation of naturally associated bacteria of necromenic Pristionchus nematodes and fitness consequences. J Exp Biol 211:1927-1936. https://doi.org/10.1242/jeb.014944.
7. Thomas R, Hamat RA, Neela V. 2013. Stenotrophomonas maltophilia: pathogenesis model using Caenorhabditis elegans. J Med Microbiol 62: 1777-1779. https://doi.org/10.1099/jmm.0.063230-0.
8. White CV, Darby BJ, Breeden RJ, Herman MA. 2016. A Stenotrophomonas maltophilia strain evades a major Caenorhabditis elegans defense pathway. Infect Immun 84:524-536. https://doi.org/10.1128/IAI.00711-15.
9. Fierst JL, Willis JH, Thomas CG, Wang W, Reynolds RM, Ahearne TE, Cutter AD, Phillips PC. 2015. Reproductive mode and the evolution of genome size and structure in Caenorhabditis nematodes. PLoS Genet 11:e1005323. https://doi.org/10.1371/journal.pgen.1005323.
10. Gnerre S, Maccallum I, Przybylski D, Ribeiro FJ, Burton JN, Walker BJ, Sharpe T, Hall G, Shea TP, Sykes S, Berlin AM, Aird D, Costello M, Daza R, Williams L, Nicol R, Gnirke A, Nusbaum C, Lander ES, Jaffe DB. 2011. High-quality draft assemblies of mammalian genomes from massively parallel sequence data. Proc Natl Acad Sci U S A 108:1513-1518. https://doi.org/10.1073/pnas.1017351108.
11. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol 215:403-410. https://doi.org/10.1016/S0022-2836(05)80360-2.
12. Kumar S, Jones M, Koutsovoulos G, Clarke M, Blaxter M. 2013. Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots. Front Genet 4:237. https://doi.org/10.3389/fgene.2013.00237.
13. Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJM, Birol I. 2009. ABySS: a parallel assembler for short read sequence data. Genome Res 19:1117-1123. https://doi.org/10.1101/gr.089532.108.
14. Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki EP, Zaslavsky L, Lomsadze A, Pruitt KD, Borodovsky M, Ostell J. 2016. NCBI prokaryotic genome annotation pipeline. Nucleic Acids Res 44: 6614-6624. https://doi.org/10.1093/nar/gkw569.
15. Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. 2008. The RAST server: rapid annotations using subsystems technology. BMC Genomics 9:75. https://doi.org/10.1186/1471-2164-9-75.
16. Zahir Z, Seed KD, Dennis JJ. 2006. Isolation and characterization of novel organic solvent-tolerant bacteria. Extremophiles 10:129-138. https://doi.org/10.1007/s00792-005-0483-y.