Identification of the bacterial reservoirs for the middle ear using phylogenic analysis

JAMA Otolaryngology - Head and Neck Surgery

Volumn 143, Issue 2, 2017, Pages 155-161

  Chan, Chun Ling ^a   Wabnitz, David ^b   Bassiouni, Ahmed ^a   Wormald, Peter John ^a   Vreugde, Sarah ^a   Psaltis, Alkis James ^a  

^a UNIVERSITY OF ADELAIDE   (Australia)

^b WOMEN S AND CHILDREN S HOSPITAL   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOID; ADOLESCENT; ALLOIOCOCCUS OTITIDIS; ARTICLE; BACTERIUM IDENTIFICATION; CHILD; CLINICAL ARTICLE; CLINICAL OUTCOME; CORYNEBACTERIUM; ENTEROBACTERIACEAE; FEMALE; HAEMOPHILUS; HUMAN; MALE; MICROFLORA; MIDDLE EAR; MORAXELLA; NONHUMAN; PHYLOGENY; PROSPECTIVE STUDY; PSEUDOMONAS; SECRETORY OTITIS MEDIA; STAPHYLOCOCCUS; STREPTOCOCCUS; AUDITORY CANAL; AUSTRALIA; DISEASE CARRIER; INFANT; MICROBIOLOGY; PRESCHOOL CHILD;

ADENOIDS; ADOLESCENT; AUSTRALIA; CHILD; CHILD, PRESCHOOL; DISEASE RESERVOIRS; EAR CANAL; EAR, MIDDLE; FEMALE; HUMANS; INFANT; MALE; MICROBIOTA; OTITIS MEDIA WITH EFFUSION; PROSPECTIVE STUDIES;

EID: 85014534100     PISSN: 21686181     EISSN: None     Source Type: Journal    
DOI: 10.1001/jamaoto.2016.3105     Document Type: Article

References (32)

1. Minovi A, Dazert S. Diseases of the middle ear in childhood. GMS Curr Top Otorhinolaryngol Head Neck Surg. 2014;13:Doc 11. doi:10.3205/cto000114
2. Ashhurst-Smith C, Hall ST, Stuart J, et al. Alloiococcus otitidis: An emerging pathogen in otitis media. J Infect. 2012;64(2):233-235.
3. Bosley GS, Whitney AM, Pruckler JM, et al. Characterization of ear fluid isolates of Alloiococcus otitidis from patients with recurrent otitis media. J Clin Microbiol. 1995;33(11):2876-2880.
4. Harimaya A, Takada R, Hendolin PH, Fujii N, Ylikoski J, Himi T. High incidence of Alloiococcus otitidis in children with otitis media, despite treatment with antibiotics. J Clin Microbiol. 2006; 44(3):946-949.
5. Chan CL, Wabnitz D, Bardy JJ, et al. The microbiome of otitis media with effusion [published online June 23, 2016]. Larnygoscope. doi:10.1002 /lary.26128
6. Zhang J, Kobert K, Flouri T, Stamatakis A. PEAR: A fast and accurate Illumina Paired-End Read Merger. Bioinformatics. 2014;30(5):614-620.
7. Rideout JR, He Y, Navas-Molina JA, et al. Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences. PeerJ. 2014;2:e545.
8. Frank DN, Spiegelman GB, DavisW, Wagner E, Lyons E, Pace NR. Culture-independent molecular analysis of microbial constituents of the healthy human outer ear. J Clin Microbiol. 2003;41(1):295-303.
9. Luzupone C, Knight R. UniFrac: A new phylogenetic method for comparing microbial communities. Appl Environ Biol. 2005;71(12):8228-8235.
10. Bray JR, Curtis JT. An ordination of upland forest communities of southern Wisconsin. Ecol Monogr. 1957;27:325-349.
11. Teele DW, Klein JO, Rosner B. Epidemiology of otitis media during the first seven years of life in children in greater Boston: A prospective, cohort study. J Infect Dis. 1989;160(1):83-94.
12. Abdi H. The Bonferonni and Šidák corrections for multiple comparisons. In: Salkind N, ed. Encyclopedia of Measurement and Statistics. Thousand Oaks, CA: SAGE Publications; 2007.
13. Zhou Y, Gao H, Mihindukulasuriya KA, et al. Biogeography of the ecosystems of the healthy human body. Genome Biol. 2013;14(1):R1.
14. Li K, Bihan M, Methé BA. Analyses of the stability and core taxonomic memberships of the human microbiome. PLoS One. 2013;8(5):e63139.
15. Márquez M, Fernández Gutiérrez del Álamo C, Girón-González JA. Gut epithelial barrier dysfunction in human immunodeficiency virus-hepatitis C virus coinfected patients: influence on innate and acquired immunity.World J Gastroenterol. 2016;22(4):1433-1448.
16. Faderl M, Noti M, Corazza N, Mueller C. Keeping bugs in check: The mucus layer as a critical component in maintaining intestinal homeostasis. IUBMB Life. 2015;67(4):275-285.
17. Yuksel S, Swarts JD, Banks J, Seroky JT, Doyle WJ. In vivo measurement of O2 and CO2 gas exchange across the human tympanic membrane. Acta Otolaryngol. 2009;129(7):716-725.
18. Guan X, Jiang S, Seale TW, Hitt BM, Gan RZ. Morphological changes in the tympanic membrane associated with Haemophilus influenzae-induced acute otitis media in the chinchilla. Int J Pediatr Otorhinolaryngol. 2015;79(9):1462-1471.
19. Berger G. Nature of spontaneous tympanic membrane perforation in acute otitis media in children. J Laryngol Otol. 1989;103(12):1150-1153.
20. Mittal R, Lisi CV, Gerring R, et al. Current concepts in the pathogenesis and treatment of chronic suppurative otitis media. J Med Microbiol. 2015;64(10):1103-1116.
21. Liu CM, Cosetti MK, Aziz M, et al. The otologic microbiome: A study of the bacterial microbiota in a pediatric patient with chronic serous otitis media using 16SrRNA gene-based pyrosequencing. Arch Otolaryngol Head Neck Surg. 2011;137(7):664-668.
22. Faden H, Dryja D. Recovery of a unique bacterial organism in human middle ear fluid and its possible role in chronic otitis media. J Clin Microbiol. 1989;27(11):2488-2491.
23. Leskinen K, Hendolin P, Virolainen-Julkunen A, Ylikoski J, Jero J. The clinical role of Alloiococcus otitidis in otitis media with effusion. Int J Pediatr Otorhinolaryngol. 2002;66(1):41-48.
24. Tano K, von Essen R, Eriksson PO, Sjöstedt A. Alloiococcus otitidis: otitis media pathogen or normal bacterial flora? APMIS. 2008;116(9):785-790.
25. Gövenç MG, Midilli K, Inci E, et al. Lack of Chlamydophila pneumoniae and predominance of Alloiococcus otitidis in middle ear fluids of children with otitis media with effusion. Auris Nasus Larynx. 2010;37(3):269-273.
26. Harimaya A, Takada R, Himi T, Yokota S, Fujii N. Evidence of local antibody response against Alloiococcus otitidis in the middle ear cavity of children with otitis media. FEMS Immunol Med Microbiol. 2007;49(1):41-45.
27. Himi T, Kita H, Mitsuzawa H, et al. Effect of Alloiococcus otitidis and three pathogens of otitis media in production of interleukin-12 by human monocyte cell line. FEMS Immunol Med Microbiol. 2000;29(2):101-106.
28. Cakar M, Demirbas S, Yildizoglu U, et al. First report of endocarditis by Alloiococcus otitidis spp in a patient with a history of chronic otitis. J Infect Public Health. 2013;6(6):494-495.
29. Marchino T, Vela JI, Bassaganyas F, Sánchez S, Buil JA. Acute-onset endophthalmitis caused by Alloiococcus otitidis following a dexamethasone intravitreal implant. Case Rep Ophthalmol. 2013;4 (1):37-41.
30. Leskinen K, Hendolin P, Virolainen-Julkunen A, Ylikoski J, Jero J. Alloiococcus otitidis in acute otitis media. Int J Pediatr Otorhinolaryngol. 2004;68 (1):51-56.
31. Marsh RL, Binks MJ, Beissbarth J, et al. Quantitative PCR of ear discharge from indigenous Australian children with acute otitis media with perforation supports a role for Alloiococcus otitidis as a secondary pathogen. BMC Ear Nose Throat Disord. 2012;12:11.
32. Hill M. Diversity and evenness: A unifying notation and its consequences. Ecology. 1973;54 (2):427-432.