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Volumn 18, Issue 1, 2017, Pages 1-

A practical exact maximum compatibility algorithm for reconstruction of recent evolutionary history

Author keywords

Bacterial genomes; Homoplasy; Maximum compatibility; Phylogeny

Indexed keywords

BACTERIA; BIOLOGY; NUCLEOTIDES;

EID: 85013767346     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/s12859-017-1520-4     Document Type: Article
Times cited : (23)

References (22)
  • 1
    • 84963056475 scopus 로고
    • A method of selection of characters in numerical taxonomy
    • Le Quesne WJ. A method of selection of characters in numerical taxonomy. Syst Zool. 1969;18:201-5.
    • (1969) Syst Zool , vol.18 , pp. 201-205
    • Quesne, W.J.1
  • 2
    • 0000747964 scopus 로고
    • Further studies based on the uniquely derived character concept
    • Le Quesne WJ. Further studies based on the uniquely derived character concept. Syst Zool. 1972;21:281-8.
    • (1972) Syst Zool , vol.21 , pp. 281-288
    • Quesne, W.J.1
  • 3
    • 84876847817 scopus 로고    scopus 로고
    • Neutral genomic microevolution of a recently emerged pathogen, Salmonella enterica serovar Agona
    • Zhou Z, McCann A, Litrup E, Murphy R, Cormican M, Fanning S, et al. Neutral genomic microevolution of a recently emerged pathogen, Salmonella enterica serovar Agona. PLoS Genet. 2013;9(4):e1003471.
    • (2013) PLoS Genet , vol.9 , Issue.4
    • Zhou, Z.1    McCann, A.2    Litrup, E.3    Murphy, R.4    Cormican, M.5    Fanning, S.6
  • 4
    • 0001306645 scopus 로고
    • A Likelihood Approach to Character Weighting and What it Tells us about Parsimony and Compatibility
    • Felsenstein J. A Likelihood Approach to Character Weighting and What it Tells us about Parsimony and Compatibility. Biol J Linn Soc. 1981;16:183-96.
    • (1981) Biol J Linn Soc , vol.16 , pp. 183-196
    • Felsenstein, J.1
  • 5
    • 84929574988 scopus 로고    scopus 로고
    • Circumstances in which parsimony but not compatibility will be provably misleading
    • Scotland RW, Steel M. Circumstances in which parsimony but not compatibility will be provably misleading. Syst Biol. 2015;64:492-504.
    • (2015) Syst Biol , vol.64 , pp. 492-504
    • Scotland, R.W.1    Steel, M.2
  • 6
    • 33845871454 scopus 로고    scopus 로고
    • Application of the character compatibility approach to generalized molecular sequence data: branching order of the proteobacterial subdivisions
    • Gupta RS, Sneath PHA. Application of the character compatibility approach to generalized molecular sequence data: branching order of the proteobacterial subdivisions. J Mol Evol. 2007;64:90-100.
    • (2007) J Mol Evol , vol.64 , pp. 90-100
    • Gupta, R.S.1    Sneath, P.H.A.2
  • 7
    • 0017618286 scopus 로고
    • On the Compatibility of Binary Qualitative Taxonomic Characters
    • McMorris FR. On the Compatibility of Binary Qualitative Taxonomic Characters. Bull Math Biol. 1977;39:133-8.
    • (1977) Bull Math Biol , vol.39 , pp. 133-138
    • McMorris, F.R.1
  • 8
    • 0003037529 scopus 로고
    • Reducibility among combinatorial problems
    • Miller RE, Thatcher JW, editors. New York: Plenum Press
    • Karp RM. Reducibility among combinatorial problems. In: Miller RE, Thatcher JW, editors. Complexity of Computer Computations. New York: Plenum Press; 1972. p. 85-103.
    • (1972) Complexity of Computer Computations , pp. 85-103
    • Karp, R.M.1
  • 9
    • 84920527581 scopus 로고    scopus 로고
    • A review on algorithms for maximum clique problems
    • Wu Q, Hao JK. A review on algorithms for maximum clique problems. Eur J Oper Res. 2015;242:693-709.
    • (2015) Eur J Oper Res , vol.242 , pp. 693-709
    • Wu, Q.1    Hao, J.K.2
  • 10
    • 0025521978 scopus 로고
    • An Exact Algorithm for the Maximum Clique Problem
    • Carraghan R, Pardalos PM. An Exact Algorithm for the Maximum Clique Problem. Oper Res Lett. 1990;9:375-82.
    • (1990) Oper Res Lett , vol.9 , pp. 375-382
    • Carraghan, R.1    Pardalos, P.M.2
  • 11
    • 33845301107 scopus 로고
    • An algorithm for finding a maximum complete subgraph
    • Technical Report of the National Convention of IECE 1978
    • Tomita E, Yamada M. An algorithm for finding a maximum complete subgraph. Conference Records of IECE (Technical Report of the National Convention of IECE 1978). 1978. p. 8.
    • (1978) Conference Records of IECE , pp. 8
    • Tomita, E.1    Yamada, M.2
  • 12
    • 84867997005 scopus 로고    scopus 로고
    • A fast algorithm for the maximum clique problem
    • Östergård PRJ. A fast algorithm for the maximum clique problem. Discret Appl Math. 2002;120:197-207.
    • (2002) Discret Appl Math , vol.120 , pp. 197-207
    • Östergård, P.R.J.1
  • 13
    • 4043148258 scopus 로고
    • Theoretical and computational considerations of the compatibility of qualitative taxonomic characters
    • Felsenstein J, editor. Numerical Taxonomy, NATO ASI Series Vol. G1. Berlin: Springer-Verlag
    • Meacham CA. Theoretical and computational considerations of the compatibility of qualitative taxonomic characters. In: Felsenstein J, editor. Numerical Taxonomy, NATO ASI Series Vol. G1. Berlin: Springer-Verlag; 1983. p. 304-14.
    • (1983) , pp. 304-314
    • Meacham, C.A.1
  • 14
    • 85013861359 scopus 로고    scopus 로고
    • Accessed 25 Oct 2016.
    • SWIG website. http://www.swig.org/. Accessed 25 Oct 2016.
  • 16
  • 17
    • 85013840157 scopus 로고    scopus 로고
    • The NCBI Pathogen Analysis Pipeline to Support Real Time Sequencing of Foodborne Pathogens (slides)
    • Accessed 25 Oct 2016.
    • Klimke W. The NCBI Pathogen Analysis Pipeline to Support Real Time Sequencing of Foodborne Pathogens (slides). http://www.slideshare.net/ExternalEvents/the-national-center-for-biotechnology-information-ncbi-pathogen-analysis-pipeline-to-support-real-time-sequencing-of-foodborne-pathogens. Accessed 25 Oct 2016.
    • Klimke, W.1
  • 18
    • 45749124657 scopus 로고    scopus 로고
    • TNT: a free program for phylogenetic analysis
    • Goloboff P, Farris J, Nixon K. TNT: a free program for phylogenetic analysis. Cladistics. 2008;24:774-86.
    • (2008) Cladistics , vol.24 , pp. 774-786
    • Goloboff, P.1    Farris, J.2    Nixon, K.3
  • 19
    • 84973339539 scopus 로고    scopus 로고
    • PHYLIP (Phylogeny Inference Package) version 3.6
    • Distributed by the author. , University of Washington, Seattle
    • Felsenstein J. PHYLIP (Phylogeny Inference Package) version 3.6. 2005; Distributed by the author. Department of Genome Sciences, University of Washington, Seattle.
    • (2005) Department of Genome Sciences
    • Felsenstein, J.1
  • 20
    • 34247397066 scopus 로고    scopus 로고
    • A new algorithm for the maximum-weight clique problem
    • Östergård PRJ. A new algorithm for the maximum-weight clique problem. Electron Notes Discrete Math. 1999;3:153-6.
    • (1999) Electron Notes Discrete Math , vol.3 , pp. 153-156
    • Östergård, P.R.J.1
  • 21
    • 85013814794 scopus 로고    scopus 로고
    • Accessed 25 Oct 2016
    • Cliquer homepage. https://users.aalto.fi/~pat/cliquer.html. Accessed 25 Oct 2016.
  • 22
    • 79251544864 scopus 로고    scopus 로고
    • Rapid pneumococcal evolution in response to clinical interventions
    • Croucher NJ, Harris SR, Fraser C, Quail MA, Burton J, van der Linden M, et al. Rapid pneumococcal evolution in response to clinical interventions. Science. 2011;331(6016):430-4.
    • (2011) Science , vol.331 , Issue.6016 , pp. 430-434
    • Croucher, N.J.1    Harris, S.R.2    Fraser, C.3    Quail, M.A.4    Burton, J.5    Linden, M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.