메뉴 건너뛰기




Volumn 3, Issue 4, 2008, Pages 235-245

Pathway knowledge base: An integrated pathway resource using BioPAX

Author keywords

BioPAX; Pathways; RDF

Indexed keywords


EID: 85013610623     PISSN: 15705838     EISSN: 18758533     Source Type: Journal    
DOI: 10.3233/AO-2008-0054     Document Type: Article
Times cited : (3)

References (21)
  • 1
    • 33644873677 scopus 로고    scopus 로고
    • Pathguide: A pathway resource list
    • Database Issue
    • Bader, G.D., Cary, M.P. et al. (2006). Pathguide: a pathway resource list. Nucleic Acids Res., 34(Database Issue), D504-D506.
    • (2006) Nucleic Acids Res. , vol.34 , pp. D504-D506
    • Bader, G.D.1    Cary, M.P.2
  • 2
    • 38049165049 scopus 로고    scopus 로고
    • Retrieved December 2006, from
    • BioPAX-Consortium (2006). BioPAX: Biological pathways exchange. Retrieved December 2006, from: http://www.biopax.org/.
    • (2006) BioPAX: Biological pathways exchange
  • 4
    • 0036326896 scopus 로고    scopus 로고
    • PATIKA: An integrated visual environment for collaborative construction and analysis of cellular pathways
    • Demir, E., Babur, O. et al. (2002). PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways. Bioinformatics, 18(7), 996-1003.
    • (2002) Bioinformatics , vol.18 , Issue.7 , pp. 996-1003
    • Demir, E.1    Babur, O.2
  • 5
    • 51749118661 scopus 로고    scopus 로고
    • Perfuse: A toolkit for interactive information visualization
    • Human Factors in Computing Systems. New York: ACM Press
    • Heer, J., Card, S. et al. (2005). Perfuse: A toolkit for interactive information visualization. In CHI 2005, Human Factors in Computing Systems. New York: ACM Press.
    • (2005) CHI 2005
    • Heer, J.1    Card, S.2
  • 6
    • 0037342537 scopus 로고    scopus 로고
    • The systems biology markup language (SBML): A medium for representation and exchange of biochemical network models
    • Hucka, M., Finney, A. et al. (2003). The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics, 19(4), 524-531.
    • (2003) Bioinformatics , vol.19 , Issue.4 , pp. 524-531
    • Hucka, M.1    Finney, A.2
  • 7
    • 13444259844 scopus 로고    scopus 로고
    • Reactome: A knowledgebase of biological pathways
    • Database Issue
    • Joshi-Tope, G., Gillespie, M. et al. (2005). Reactome: a knowledgebase of biological pathways. Nucleic Acids Res., 33(Database Issue), D428-D432.
    • (2005) Nucleic Acids Res. , vol.33 , pp. D428-D432
    • Joshi-Tope, G.1    Gillespie, M.2
  • 8
    • 33644874819 scopus 로고    scopus 로고
    • From genomics to chemical genomics: New developments in KEGG
    • Database Issue
    • Kanehisa, M., Goto, S. et al. (2006). From genomics to chemical genomics: new developments in KEGG. Nucleic Acids Res., 34(Database Issue), D354-D357.
    • (2006) Nucleic Acids Res. , vol.34 , pp. D354-D357
    • Kanehisa, M.1    Goto, S.2
  • 9
    • 0035860545 scopus 로고    scopus 로고
    • Pathway databases: A case study in computational symbolic theories
    • Karp, P.D. (2001). Pathway databases: a case study in computational symbolic theories. Science, 293(5537), 2040-2044.
    • (2001) Science , vol.293 , Issue.5537 , pp. 2040-2044
    • Karp, P.D.1
  • 10
    • 11244328060 scopus 로고    scopus 로고
    • The pathway tools software
    • Karp, P.D., Paley, S. et al. (2002). The pathway tools software. Bioinformatics, 18(Suppl. 1), S225-S232.
    • (2002) Bioinformatics , vol.18 , pp. S225-S232
    • Karp, P.D.1    Paley, S.2
  • 11
    • 27244436714 scopus 로고    scopus 로고
    • Expansion of the BioCyc collection of pathway/genome databases to 160 genomes
    • Karp, P.D., Ouzounis, C.A. et al. (2005). Expansion of the BioCyc collection of pathway/genome databases to 160 genomes. Nucleic Acids Res., 33(19), 6083-6089.
    • (2005) Nucleic Acids Res. , vol.33 , Issue.19 , pp. 6083-6089
    • Karp, P.D.1    Ouzounis, C.A.2
  • 12
    • 0033670135 scopus 로고    scopus 로고
    • Pathway analysis in metabolic databases via differential metabolic display (DMD)
    • Kuffner, R., Zimmer, R. et al. (2000). Pathway analysis in metabolic databases via differential metabolic display (DMD). Bioinformatics, 16(9), 825-836.
    • (2000) Bioinformatics , vol.16 , Issue.9 , pp. 825-836
    • Kuffner, R.1    Zimmer, R.2
  • 14
    • 0026638056 scopus 로고
    • Infrequent RAS oncogene mutations in human prostate cancer
    • Moul, J.W., Friedrichs, P.A. et al. (1992). Infrequent RAS oncogene mutations in human prostate cancer. Prostate, 20(4), 327-338.
    • (1992) Prostate , vol.20 , Issue.4 , pp. 327-338
    • Moul, J.W.1    Friedrichs, P.A.2
  • 17
    • 14044263116 scopus 로고    scopus 로고
    • HyBrow: A prototype system for computer-aided hypothesis evaluation
    • Racunas, S.A., Shah, N.H. et al. (2004). HyBrow: a prototype system for computer-aided hypothesis evaluation. Bioinformatics, 20(Suppl. 1), i257-i264.
    • (2004) Bioinformatics , vol.20 , pp. i257-i264
    • Racunas, S.A.1    Shah, N.H.2
  • 18
    • 33746420065 scopus 로고    scopus 로고
    • A case study in pathway knowledgebase verification
    • Racunas, S.A., Shah, N.H. et al. (2006). A case study in pathway knowledgebase verification. BMC Bioinformatics, 7, 196.
    • (2006) BMC Bioinformatics , vol.7 , pp. 196
    • Racunas, S.A.1    Shah, N.H.2
  • 19
    • 14844326483 scopus 로고    scopus 로고
    • Computational prediction of human metabolic pathways from the complete human genome
    • Romero, P., Wagg, J. et al. (2005). Computational prediction of human metabolic pathways from the complete human genome. Genome Biol., 6(1), R2.
    • (2005) Genome Biol. , vol.6 , Issue.1 , pp. R2
    • Romero, P.1    Wagg, J.2
  • 20
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: A software environment for integrated models of biomolecular interaction networks
    • Shannon, P., Markiel, A. et al. (2003). Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res., 13(11), 2498-2504.
    • (2003) Genome Res. , vol.13 , Issue.11 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2
  • 21
    • 28944444766 scopus 로고    scopus 로고
    • Representations of molecular pathways: An evaluation of SBML, PSI MI and BioPAX
    • Stromback, L. & Lambrix, P. (2005). Representations of molecular pathways: an evaluation of SBML, PSI MI and BioPAX. Bioinformatics, 21(24), 4401-4407.
    • (2005) Bioinformatics , vol.21 , Issue.24 , pp. 4401-4407
    • Stromback, L.1    Lambrix, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.