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Volumn 7, Issue , 2017, Pages

Plasma Exosome Profiling of Cancer Patients by a Next Generation Systems Biology Approach

(21)  Domenyuk, Valeriy a   Zhong, Zhenyu a   Stark, Adam a   Xiao, Nianqing a   O'Neill, Heather A a   Wei, Xixi a   Wang, Jie a   Tinder, Teresa T a   Tonapi, Sonal a   Duncan, Janet a   Hornung, Tassilo a   Hunter, Andrew a   Miglarese, Mark R a   Schorr, Joachim a   Halbert, David D a   Quackenbush, John b,c   Poste, George d   Berry, Donald A e   Mayer, Günter a,f   Famulok, Michael a,f,g   more..


Author keywords

[No Author keywords available]

Indexed keywords

OLIGODEOXYRIBONUCLEOTIDE; TUMOR MARKER;

EID: 85013377844     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep42741     Document Type: Article
Times cited : (43)

References (37)
  • 1
    • 34249792918 scopus 로고    scopus 로고
    • Tumor exosomes inhibit differentiation of bone marrow dendritic cells
    • Yu, S. et al. Tumor exosomes inhibit differentiation of bone marrow dendritic cells. J Immunol 178, 6867-6875 (2007).
    • (2007) J Immunol , vol.178 , pp. 6867-6875
    • Yu, S.1
  • 2
    • 79959969458 scopus 로고    scopus 로고
    • Microparticles in angiogenesis: Therapeutic potential
    • Martinez, M. C. & Andriantsitohaina, R. Microparticles in angiogenesis: therapeutic potential. Circ Res 109, 110-119, doi: 10.1161/CIRCRESAHA.110.233049 (2011).
    • (2011) Circ Res , vol.109 , pp. 110-119
    • Martinez, M.C.1    Andriantsitohaina, R.2
  • 3
    • 84930274589 scopus 로고    scopus 로고
    • Stromal fibroblast-derived miR-409 promotes epithelial-to-mesenchymal transition and prostate tumorigenesis
    • Josson, S. et al. Stromal fibroblast-derived miR-409 promotes epithelial-to-mesenchymal transition and prostate tumorigenesis. Oncogene 34, 2690-2699, doi: 10.1038/onc.2014.212 (2015).
    • (2015) Oncogene , vol.34 , pp. 2690-2699
    • Josson, S.1
  • 4
    • 84947723880 scopus 로고    scopus 로고
    • Tumour exosome integrins determine organotropic metastasis
    • Hoshino, A. et al. Tumour exosome integrins determine organotropic metastasis. Nature, doi: 10.1038/nature15756 (2015).
    • (2015) Nature
    • Hoshino, A.1
  • 5
    • 84874377202 scopus 로고    scopus 로고
    • Extracellular vesicles: Exosomes, microvesicles, and friends
    • Raposo, G. & Stoorvogel, W. Extracellular vesicles: exosomes, microvesicles, and friends. J Cell Biol 200, 373-383, doi: 10.1083/jcb.201211138 (2013).
    • (2013) J Cell Biol , vol.200 , pp. 373-383
    • Raposo, G.1    Stoorvogel, W.2
  • 6
    • 77953097955 scopus 로고    scopus 로고
    • Circulating tumour-derived microvesicles in plasma of gastric cancer patients
    • Baran, J. et al. Circulating tumour-derived microvesicles in plasma of gastric cancer patients. Cancer Immunol Immunother 59, 841-850, doi: 10.1007/s00262-009-0808-2 (2010).
    • (2010) Cancer Immunol Immunother , vol.59 , pp. 841-850
    • Baran, J.1
  • 7
    • 84939262281 scopus 로고    scopus 로고
    • Extracellular vesicles such as prostate cancer cell fragments as a fluid biopsy for prostate cancer
    • Brett, S. I., Kim, Y., Biggs, C. N., Chin, J. L. & Leong, H. S. Extracellular vesicles such as prostate cancer cell fragments as a fluid biopsy for prostate cancer. Prostate Cancer Prostatic Dis 18, 213-220, doi: 10.1038/pcan.2015.17 (2015).
    • (2015) Prostate Cancer Prostatic Dis , vol.18 , pp. 213-220
    • Brett, S.I.1    Kim, Y.2    Biggs, C.N.3    Chin, J.L.4    Leong, H.S.5
  • 8
    • 84929292388 scopus 로고    scopus 로고
    • Extracellular vesicles in cancer: Exosomes, microvesicles and the emerging role of large oncosomes
    • Minciacchi, V. R., Freeman, M. R. & Di Vizio, D. Extracellular vesicles in cancer: exosomes, microvesicles and the emerging role of large oncosomes. Semin Cell Dev Biol 40, 41-51, doi: 10.1016/j.semcdb.2015.02.010 (2015).
    • (2015) Semin Cell Dev Biol , vol.40 , pp. 41-51
    • Minciacchi, V.R.1    Freeman, M.R.2    Di Vizio, D.3
  • 9
    • 84861228574 scopus 로고    scopus 로고
    • Extracellular vesicles-vehicles that spread cancer genes
    • Rak, J. & Guha, A. Extracellular vesicles-vehicles that spread cancer genes. Bioessays 34, 489-497, doi: 10.1002/bies.201100169 (2012).
    • (2012) Bioessays , vol.34 , pp. 489-497
    • Rak, J.1    Guha, A.2
  • 10
    • 84927943823 scopus 로고    scopus 로고
    • Extracellular vesicles: Potential applications in cancer diagnosis, prognosis, and epidemiology
    • Verma, M., Lam, T. K., Hebert, E. & Divi, R. L. Extracellular vesicles: potential applications in cancer diagnosis, prognosis, and epidemiology. BMC Clin Pathol 15, 6, doi: 10.1186/s12907-015-0005-5 (2015).
    • (2015) BMC Clin Pathol , vol.15 , pp. 6
    • Verma, M.1    Lam, T.K.2    Hebert, E.3    Divi, R.L.4
  • 11
    • 0005620475 scopus 로고    scopus 로고
    • Aptamers as therapeutic and diagnostic agents
    • Brody, E. N. & Gold, L. Aptamers as therapeutic and diagnostic agents. J Biotechnol 74, 5-13 (2000).
    • (2000) J Biotechnol , vol.74 , pp. 5-13
    • Brody, E.N.1    Gold, L.2
  • 12
    • 35148840942 scopus 로고    scopus 로고
    • Functional aptamers and aptazymes in biotechnology, diagnostics, and therapy
    • Famulok, M., Hartig, J. S. & Mayer, G. Functional aptamers and aptazymes in biotechnology, diagnostics, and therapy. Chem. Rev. 107, 3715-3743 (2007).
    • (2007) Chem. Rev. , vol.107 , pp. 3715-3743
    • Famulok, M.1    Hartig, J.S.2    Mayer, G.3
  • 13
    • 0032853242 scopus 로고    scopus 로고
    • In vitro selection of functional nucleic acids
    • Wilson, D. S. & Szostak, J. W. In vitro selection of functional nucleic acids. Annu Rev Biochem 68, 611-647, doi: 10.1146/annurev.biochem.68.1.611 (1999).
    • (1999) Annu Rev Biochem , vol.68 , pp. 611-647
    • Wilson, D.S.1    Szostak, J.W.2
  • 14
    • 0026575221 scopus 로고
    • Selection of Single-Stranded-DNA Molecules That Bind and Inhibit Human Thrombin
    • Bock, L. C., Griffin, L. C., Latham, J. A., Vermaas, E. H. & Toole, J. J. Selection of Single-Stranded-DNA Molecules That Bind and Inhibit Human Thrombin. Nature 355, 564-566 (1992).
    • (1992) Nature , vol.355 , pp. 564-566
    • Bock, L.C.1    Griffin, L.C.2    Latham, J.A.3    Vermaas, E.H.4    Toole, J.J.5
  • 15
    • 0026599465 scopus 로고
    • Selection in vitro of single-stranded DNA molecules that fold into specific ligand-binding structures
    • Ellington, A. D. & Szostak, J. W. Selection in vitro of single-stranded DNA molecules that fold into specific ligand-binding structures. Nature 355, 850-852, doi: 10.1038/355850a0 (1992).
    • (1992) Nature , vol.355 , pp. 850-852
    • Ellington, A.D.1    Szostak, J.W.2
  • 16
    • 34247186502 scopus 로고    scopus 로고
    • Using aptamers to identify and enter cells
    • Chu, T., Ebright, J. & Ellington, A. D. Using aptamers to identify and enter cells. Curr Opin Mol Ther 9, 137-144 (2007).
    • (2007) Curr Opin Mol Ther , vol.9 , pp. 137-144
    • Chu, T.1    Ebright, J.2    Ellington, A.D.3
  • 17
    • 74049140005 scopus 로고    scopus 로고
    • In vivo selection of tumor-targeting RNA motifs
    • Mi, J. et al. In vivo selection of tumor-targeting RNA motifs. Nat Chem Biol 6, 22-24, doi: 10.1038/nchembio.277 (2010).
    • (2010) Nat Chem Biol , vol.6 , pp. 22-24
    • Mi, J.1
  • 18
    • 84937248650 scopus 로고    scopus 로고
    • Methods of isolating extracellular vesicles impact down-stream analyses of their cargoes
    • Taylor, D. D. & Shah, S. Methods of isolating extracellular vesicles impact down-stream analyses of their cargoes. Methods, doi: 10.1016/j.ymeth.2015.02.019 (2015).
    • (2015) Methods
    • Taylor, D.D.1    Shah, S.2
  • 19
    • 84871702725 scopus 로고    scopus 로고
    • Vesiclepedia: A compendium for extracellular vesicles with continuous community annotation
    • Kalra, H. et al. Vesiclepedia: a compendium for extracellular vesicles with continuous community annotation. PLoS Biol 10, e1001450, doi: 10.1371/journal.pbio.1001450 (2012).
    • (2012) PLoS Biol , vol.10 , pp. e1001450
    • Kalra, H.1
  • 20
    • 84988811480 scopus 로고    scopus 로고
    • HMPAS: Human Membrane Protein Analysis System
    • Kim, M. S. & Yi, G. S. HMPAS: Human Membrane Protein Analysis System. Proteome Sci 11, S7, doi: 10.1186/1477-5956-11-S1-S7 (2013).
    • (2013) Proteome Sci , vol.11 , pp. S7
    • Kim, M.S.1    Yi, G.S.2
  • 21
    • 84894606695 scopus 로고    scopus 로고
    • MiRNA in plasma exosome is stable under different storage conditions
    • Ge, Q. et al. miRNA in plasma exosome is stable under different storage conditions. Molecules 19, 1568-1575, doi: 10.3390/molecules19021568 (2014).
    • (2014) Molecules , vol.19 , pp. 1568-1575
    • Ge, Q.1
  • 22
    • 84907908424 scopus 로고    scopus 로고
    • Acute stressor exposure modifies plasma exosome-associated heat shock protein 72 (Hsp72) and microRNA (miR-142-5p and miR-203)
    • Beninson, L. A. et al. Acute stressor exposure modifies plasma exosome-associated heat shock protein 72 (Hsp72) and microRNA (miR-142-5p and miR-203). PLoS One 9, e108748, doi: 10.1371/journal.pone.0108748 (2014).
    • (2014) PLoS One , vol.9 , pp. e108748
    • Beninson, L.A.1
  • 23
    • 84859618435 scopus 로고    scopus 로고
    • Quantitative proteome profiling of normal human circulating microparticles
    • Ostergaard, O. et al. Quantitative proteome profiling of normal human circulating microparticles. J Proteome Res 11, 2154-2163, doi: 10.1021/pr200901p (2012).
    • (2012) J Proteome Res , vol.11 , pp. 2154-2163
    • Ostergaard, O.1
  • 24
    • 84924455330 scopus 로고    scopus 로고
    • Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets
    • Pienimaeki-Roemer, A. et al. Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets. Transfusion 55, 507-521, doi: 10.1111/trf.12874 (2015).
    • (2015) Transfusion , vol.55 , pp. 507-521
    • Pienimaeki-Roemer, A.1
  • 25
    • 0023925989 scopus 로고
    • Characterization of immune complexes detected by the 125I-C1q binding assay in breast cancer
    • Krieger, G., Kneba, M., Bolz, I. & Nagel, G. A. Characterization of immune complexes detected by the 125I-C1q binding assay in breast cancer. Clin Immunol Immunopathol 46, 14-23 (1988).
    • (1988) Clin Immunol Immunopathol , vol.46 , pp. 14-23
    • Krieger, G.1    Kneba, M.2    Bolz, I.3    Nagel, G.A.4
  • 26
    • 84892511644 scopus 로고    scopus 로고
    • Large-scale gene function analysis with the PANTHER classification system
    • Mi, H., Muruganujan, A., Casagrande, J. T. & Thomas, P. D. Large-scale gene function analysis with the PANTHER classification system. Nat Protoc 8, 1551-1566, doi: 10.1038/nprot.2013.092 (2013).
    • (2013) Nat Protoc , vol.8 , pp. 1551-1566
    • Mi, H.1    Muruganujan, A.2    Casagrande, J.T.3    Thomas, P.D.4
  • 27
    • 84898764220 scopus 로고    scopus 로고
    • Proteomics analysis of cancer exosomes using a novel modified aptamer-based array (SOMAscan) platform
    • Webber, J. et al. Proteomics analysis of cancer exosomes using a novel modified aptamer-based array (SOMAscan) platform. Mol Cell Proteomics 13, 1050-1064, doi: 10.1074/mcp.M113.032136 (2014).
    • (2014) Mol Cell Proteomics , vol.13 , pp. 1050-1064
    • Webber, J.1
  • 28
    • 34250349649 scopus 로고    scopus 로고
    • Antibody microarray-based profiling of complex specimens: Systematic evaluation of labeling strategies
    • Kusnezow, W. et al. Antibody microarray-based profiling of complex specimens: systematic evaluation of labeling strategies. Proteomics 7, 1786-1799, doi: 10.1002/pmic.200600762 (2007).
    • (2007) Proteomics , vol.7 , pp. 1786-1799
    • Kusnezow, W.1
  • 29
    • 77951253890 scopus 로고    scopus 로고
    • Antibody array-based technologies for cancer protein profiling and functional proteomic analyses using serum and tissue specimens
    • Sanchez-Carbayo, M. Antibody array-based technologies for cancer protein profiling and functional proteomic analyses using serum and tissue specimens. Tumour Biol 31, 103-112, doi: 10.1007/s13277-009-0014-z (2010).
    • (2010) Tumour Biol , vol.31 , pp. 103-112
    • Sanchez-Carbayo, M.1
  • 30
    • 84991577565 scopus 로고    scopus 로고
    • Generating Cell Targeting Aptamers for Nanotheranostics Using Cell-SELEX
    • Lyu, Y. et al. Generating Cell Targeting Aptamers for Nanotheranostics Using Cell-SELEX. Theranostics 6, 1440-1452, doi: 10.7150/thno.15666 (2016).
    • (2016) Theranostics , vol.6 , pp. 1440-1452
    • Lyu, Y.1
  • 31
    • 84858980510 scopus 로고    scopus 로고
    • Generating aptamers by cell-SELEX for applications in molecular medicine
    • Ye, M. et al. Generating aptamers by cell-SELEX for applications in molecular medicine. Int J Mol Sci 13, 3341-3353, doi: 10.3390/ijms13033341 (2012).
    • (2012) Int J Mol Sci , vol.13 , pp. 3341-3353
    • Ye, M.1
  • 32
    • 48149099772 scopus 로고    scopus 로고
    • Enrichment of cell-targeting and population-specific aptamers by fluorescence-activated cell sorting
    • Raddatz, M. S. et al. Enrichment of cell-targeting and population-specific aptamers by fluorescence-activated cell sorting. Angew Chem Int Ed Engl 47, 5190-5193, doi: 10.1002/anie.200800216 (2008).
    • (2008) Angew Chem Int Ed Engl , vol.47 , pp. 5190-5193
    • Raddatz, M.S.1
  • 33
    • 84862024643 scopus 로고    scopus 로고
    • Advances in human proteomics at high scale with the SOMAscan proteomics platform
    • Gold, L., Walker, J. J., Wilcox, S. K. & Williams, S. Advances in human proteomics at high scale with the SOMAscan proteomics platform. N Biotechnol 29, 543-549, doi: 10.1016/j.nbt.2011.11.016 (2012).
    • (2012) N Biotechnol , vol.29 , pp. 543-549
    • Gold, L.1    Walker, J.J.2    Wilcox, S.K.3    Williams, S.4
  • 34
    • 84964395591 scopus 로고    scopus 로고
    • Identification of Developmental Endothelial Locus-1 on Circulating Extracellular Vesicles as a Novel Biomarker for Early Breast Cancer Detection
    • Moon, P. G. et al. Identification of Developmental Endothelial Locus-1 on Circulating Extracellular Vesicles as a Novel Biomarker for Early Breast Cancer Detection. Clin Cancer Res 22, 1757-1766, doi: 10.1158/1078-0432.CCR-15-0654 (2016).
    • (2016) Clin Cancer Res , vol.22 , pp. 1757-1766
    • Moon, P.G.1
  • 36
    • 84865847867 scopus 로고    scopus 로고
    • Aptamer-based affinity labeling of proteins
    • Vinkenborg, J. L., Mayer, G. & Famulok, M. Aptamer-based affinity labeling of proteins. Angew Chem Int Ed Engl 51, 9176-9180, doi: 10.1002/anie.201204174 (2012).
    • (2012) Angew Chem Int Ed Engl , vol.51 , pp. 9176-9180
    • Vinkenborg, J.L.1    Mayer, G.2    Famulok, M.3
  • 37
    • 43249109372 scopus 로고    scopus 로고
    • And characterization of exosomes from cell culture supernatants and biological fluids
    • Chapter 3, Unit 3 22
    • Thery, C., Amigorena, S., Raposo, G. & Clayton, A. Isolation and characterization of exosomes from cell culture supernatants and biological fluids. Curr Protoc Cell Biol Chapter 3, Unit 3 22, doi: 10.1002/0471143030.cb0322s30 (2006).
    • (2006) Curr Protoc Cell Biol
    • Thery, C.1    Amigorena, S.2    Raposo, G.3    Isolation, C.A.4


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