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Volumn 3, Issue , 2017, Pages

Structure of the SHR-SCR heterodimer bound to the BIRD/IDD transcriptional factor JKD

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS PROTEIN; CARRIER PROTEIN; JACKDAW PROTEIN, ARABIDOPSIS; SCR PROTEIN, ARABIDOPSIS; SHORT ROOT PROTEIN, ARABIDOPSIS; TRANSCRIPTION FACTOR;

EID: 85013270447     PISSN: None     EISSN: 20550278     Source Type: Journal    
DOI: 10.1038/nplants.2017.10     Document Type: Article
Times cited : (61)

References (45)
  • 1
    • 84859428509 scopus 로고    scopus 로고
    • Surfing along the root ground tissue gene network
    • Pauluzzi, G. et al. Surfing along the root ground tissue gene network. Dev. Biol. 365, 14-22 (2012).
    • (2012) Dev. Biol , vol.365 , pp. 14-22
    • Pauluzzi, G.1
  • 3
    • 0027219015 scopus 로고
    • Root development in Arabidopsis: Four mutants with dramatically altered root morphogenesis
    • Benfey, P. N. et al. Root development in Arabidopsis: four mutants with dramatically altered root morphogenesis. Development 119, 57-70 (1993).
    • (1993) Development , vol.119 , pp. 57-70
    • Benfey, P.N.1
  • 4
    • 0028796916 scopus 로고
    • Mutations affecting the radial organisation of the Arabidopsis root display specific defects throughout the embryonic axis
    • Scheres, B. et al. Mutations affecting the radial organisation of the Arabidopsis root display specific defects throughout the embryonic axis. Development 121, 53-62 (1995).
    • (1995) Development , vol.121 , pp. 53-62
    • Scheres, B.1
  • 5
    • 0030576502 scopus 로고    scopus 로고
    • The SCARECROW gene regulates an asymmetric cell division that is essential for generating the radial organization of the Arabidopsis root
    • Di Laurenzio, L. et al. The SCARECROW gene regulates an asymmetric cell division that is essential for generating the radial organization of the Arabidopsis root. Cell 86, 423-433 (1996).
    • (1996) Cell , vol.86 , pp. 423-433
    • Di Laurenzio, L.1
  • 6
    • 0034716906 scopus 로고    scopus 로고
    • The SHORT-ROOT gene controls radial patterning of the Arabidopsis root through radial signaling
    • Helariutta, Y. et al. The SHORT-ROOT gene controls radial patterning of the Arabidopsis root through radial signaling. Cell 101, 555-567 (2000).
    • (2000) Cell , vol.101 , pp. 555-567
    • Helariutta, Y.1
  • 7
    • 0037312037 scopus 로고    scopus 로고
    • SCARECROWis involved in positioning the stem cell niche in the Arabidopsis root meristem
    • Sabatini, S., Heidstra, R., Wildwater, M. & Scheres, B. SCARECROWis involved in positioning the stem cell niche in the Arabidopsis root meristem. Genes Dev. 17, 354-358 (2003).
    • (2003) Genes Dev , vol.17 , pp. 354-358
    • Sabatini, S.1    Heidstra, R.2    Wildwater, M.3    Scheres, B.4
  • 8
    • 84898492306 scopus 로고    scopus 로고
    • SCARECROW SCR-LIKE 23 and SHORT-ROOT control bundle sheath cell fate and function in Arabidopsis thaliana
    • Cui, H., Kong, D., Liu, X. & Hao, Y. SCARECROW, SCR-LIKE 23 and SHORT-ROOT control bundle sheath cell fate and function in Arabidopsis thaliana. Plant J. 78, 319-327 (2014).
    • (2014) Plant J , vol.78 , pp. 319-327
    • Cui, H.1    Kong, D.2    Liu, X.3    Hao, Y.4
  • 9
    • 0035921927 scopus 로고    scopus 로고
    • Intercellular movement of the putative transcription factor SHR in root patterning
    • Nakajima, K., Sena, G., Nawy, T. & Benfey, P. N. Intercellular movement of the putative transcription factor SHR in root patterning. Nature 413, 307-311 (2001).
    • (2001) Nature , vol.413 , pp. 307-311
    • Nakajima, K.1    Sena, G.2    Nawy, T.3    Benfey, P.N.4
  • 10
    • 4043062383 scopus 로고    scopus 로고
    • Mosaic analyses using marked activation and deletion clones dissect Arabidopsis SCARECROWaction in asymmetric cell division
    • Heidstra, R., Welch, D. & Scheres, B. Mosaic analyses using marked activation and deletion clones dissect Arabidopsis SCARECROWaction in asymmetric cell division. Genes Dev. 18, 1964-1969 (2004).
    • (2004) Genes Dev , vol.18 , pp. 1964-1969
    • Heidstra, R.1    Welch, D.2    Scheres, B.3
  • 11
    • 34247515226 scopus 로고    scopus 로고
    • An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants
    • Cui, H. et al. An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants. Science 316, 421-425 (2007).
    • (2007) Science , vol.316 , pp. 421-425
    • Cui, H.1
  • 12
    • 33646723046 scopus 로고    scopus 로고
    • Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis
    • Levesque, M. P. et al. Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis. PLoS Biol. 4, e143 (2006).
    • (2006) PLoS Biol , vol.4
    • Levesque, M.P.1
  • 13
    • 33749544787 scopus 로고    scopus 로고
    • The maize INDETERMINATE1 flowering time regulator defines a highly conserved zinc finger protein family in higher plants
    • Colasanti, J. et al. The maize INDETERMINATE1 flowering time regulator defines a highly conserved zinc finger protein family in higher plants. BMC Genomics 7, 158 (2006).
    • (2006) BMC Genomics , vol.7 , pp. 158
    • Colasanti, J.1
  • 14
    • 77954227869 scopus 로고    scopus 로고
    • Spatiotemporal regulation of cell-cycle genes by SHORTROOT links patterning and growth
    • Sozzani, R. et al. Spatiotemporal regulation of cell-cycle genes by SHORTROOT links patterning and growth. Nature 466, 128-132 (2010).
    • (2010) Nature , vol.466 , pp. 128-132
    • Sozzani, R.1
  • 15
    • 34548423185 scopus 로고    scopus 로고
    • Arabidopsis JACKDAW and MAGPIE zinc finger proteins delimit asymmetric cell division and stabilize tissue boundaries by restricting SHORT-ROOT action
    • Welch, D. et al. Arabidopsis JACKDAW and MAGPIE zinc finger proteins delimit asymmetric cell division and stabilize tissue boundaries by restricting SHORT-ROOT action. Genes Dev. 21, 2196-2204 (2007).
    • (2007) Genes Dev , vol.21 , pp. 2196-2204
    • Welch, D.1
  • 16
    • 84928969727 scopus 로고    scopus 로고
    • Arabidopsis BIRD zinc finger proteins jointly stabilize tissue boundaries by confining the cell fate regulator SHORT-ROOT and contributing to fate specification
    • Long, Y. et al. Arabidopsis BIRD zinc finger proteins jointly stabilize tissue boundaries by confining the cell fate regulator SHORT-ROOT and contributing to fate specification. Plant Cell 27, 1185-1199 (2015).
    • (2015) Plant Cell , vol.27 , pp. 1185-1199
    • Long, Y.1
  • 17
    • 84944730741 scopus 로고    scopus 로고
    • Transcriptional control of tissue formation throughout root development
    • Moreno-Risueno, M. A. et al. Transcriptional control of tissue formation throughout root development. Science 350, 426-430 (2015).
    • (2015) Science , vol.350 , pp. 426-430
    • Moreno-Risueno, M.A.1
  • 18
    • 0033118897 scopus 로고    scopus 로고
    • The GRAS gene family in Arabidopsis: Sequence characterization and basic expression analysis of the SCARECROW-LIKE genes
    • Pysh, L. D., Wysocka-Diller, J. W., Camilleri, C., Bouchez, D. & Benfey, P. N. The GRAS gene family in Arabidopsis: sequence characterization and basic expression analysis of the SCARECROW-LIKE genes. Plant J. 18, 111-119 (1999).
    • (1999) Plant J , vol.18 , pp. 111-119
    • Pysh, L.D.1    Wysocka-Diller, J.W.2    Camilleri, C.3    Bouchez, D.4    Benfey, P.N.5
  • 19
    • 1642380225 scopus 로고    scopus 로고
    • The role of GRAS proteins in plant signal transduction and development
    • Bolle, C. The role of GRAS proteins in plant signal transduction and development. Planta 218, 683-692 (2004).
    • (2004) Planta , vol.218 , pp. 683-692
    • Bolle, C.1
  • 20
    • 57049155555 scopus 로고    scopus 로고
    • Gibberellin-induced della recognition by the gibberellin receptor GID1
    • Murase, K., Hirano, Y., Sun, T. P. & Hakoshima, T. Gibberellin-induced DELLA recognition by the gibberellin receptor GID1. Nature 456, 459-463 (2008).
    • (2008) Nature , vol.456 , pp. 459-463
    • Murase, K.1    Hirano, Y.2    Sun, T.P.3    Hakoshima, T.4
  • 21
    • 84863034152 scopus 로고    scopus 로고
    • GRAS proteins: The versatile roles of intrinsically disordered proteins in plant signalling
    • Sun, X., Jones, W. T. & Rikkerink, E. H. GRAS proteins: the versatile roles of intrinsically disordered proteins in plant signalling. Biochem. J. 442, 1-12 (2012).
    • (2012) Biochem. J , vol.442 , pp. 1-12
    • Sun, X.1    Jones, W.T.2    Rikkerink, E.H.3
  • 22
    • 61349131940 scopus 로고    scopus 로고
    • Both the conserved GRAS domain and nuclear localization are required for SHORT-ROOT movement
    • Gallagher, K. L. & Benfey, P. N. Both the conserved GRAS domain and nuclear localization are required for SHORT-ROOT movement. Plant J. 57, 785-797 (2009).
    • (2009) Plant J , vol.57 , pp. 785-797
    • Gallagher, K.L.1    Benfey, P.N.2
  • 23
    • 0036917889 scopus 로고    scopus 로고
    • SAM (dependent) i AM: The S-adenosylmethionine-dependent methyltransferase fold
    • Martin, J. L. & McMillan, F. M. SAM (dependent) I AM: the S-adenosylmethionine-dependent methyltransferase fold. Curr. Opin. Struct. Biol. 12, 783-793 (2002).
    • (2002) Curr. Opin. Struct. Biol , vol.12 , pp. 783-793
    • Martin, J.L.1    McMillan, F.M.2
  • 24
    • 0032126760 scopus 로고    scopus 로고
    • Conserved sequence motifs in plant S-adenosyl-Lmethionine- dependent methyltransferases
    • Joshi, C. P. & Chiang, V. L. Conserved sequence motifs in plant S-adenosyl-Lmethionine- dependent methyltransferases. Plant Mol. Biol. 37, 663-674 (1998).
    • (1998) Plant Mol. Biol , vol.37 , pp. 663-674
    • Joshi, C.P.1    Chiang, V.L.2
  • 25
    • 0034923498 scopus 로고    scopus 로고
    • Design and selection of novel Cys2His2 zinc finger proteins
    • Pabo, C. O., Peisach, E. & Grant, R. A. Design and selection of novel Cys2His2 zinc finger proteins. Annu. Rev. Biochem. 70, 313-340 (2001).
    • (2001) Annu. Rev. Biochem , vol.70 , pp. 313-340
    • Pabo, C.O.1    Peisach, E.2    Grant, R.A.3
  • 26
    • 3042635753 scopus 로고    scopus 로고
    • The maize ID1 flowering time regulator is a zinc finger protein with novel DNA binding properties
    • Kozaki, A., Hake, S. & Colasanti, J. The maize ID1 flowering time regulator is a zinc finger protein with novel DNA binding properties. Nucleic Acids Res. 32, 1710-1720 (2004).
    • (2004) Nucleic Acids Res , vol.32 , pp. 1710-1720
    • Kozaki, A.1    Hake, S.2    Colasanti, J.3
  • 27
    • 80054038157 scopus 로고    scopus 로고
    • Activity of transcription factor JACKDAWis essential for SHR/SCR-dependent activation of SCARECROW and MAGPIE and is modulated by reciprocal interactions with MAGPIE, SCARECROW and SHORT ROOT
    • Ogasawara, H., Kaimi, R., Colasanti, J. & Kozaki, A. Activity of transcription factor JACKDAWis essential for SHR/SCR-dependent activation of SCARECROW and MAGPIE and is modulated by reciprocal interactions with MAGPIE, SCARECROW and SHORT ROOT. Plant Mol. Biol. 77, 489-499 (2011).
    • (2011) Plant Mol. Biol , vol.77 , pp. 489-499
    • Ogasawara, H.1    Kaimi, R.2    Colasanti, J.3    Kozaki, A.4
  • 28
    • 0025773296 scopus 로고
    • Zinc finger-DNA recognition: Crystal structure of a Zif268-DNA complex at 2.1Å
    • Pavletich, N. P. & Pabo, C. O. Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1Å. Science 252, 809-817 (1991).
    • (1991) Science , vol.252 , pp. 809-817
    • Pavletich, N.P.1    Pabo, C.O.2
  • 29
    • 64749101372 scopus 로고    scopus 로고
    • GRAS proteins form a DNA binding complex to induce gene expression during nodulation signaling in Medicago truncatula
    • Hirsch, S. et al. GRAS proteins form a DNA binding complex to induce gene expression during nodulation signaling in Medicago truncatula. Plant Cell 21, 545-557 (2009).
    • (2009) Plant Cell , vol.21 , pp. 545-557
    • Hirsch, S.1
  • 30
    • 84973640815 scopus 로고    scopus 로고
    • Crystal structure of the GRAS domain of SCARECROW-LIKE 7 in Oryza sativa
    • Li, S. et al. Crystal structure of the GRAS domain of SCARECROW-LIKE 7 in Oryza sativa. Plant Cell 28, 1025-1034 (2016).
    • (2016) Plant Cell , vol.28 , pp. 1025-1034
    • Li, S.1
  • 31
    • 84868514386 scopus 로고    scopus 로고
    • DAD2 is an α/β hydrolase likely to be involved in the perception of the plant branching hormone, strigolactone
    • Hamiaux, C. et al. DAD2 is an α/β hydrolase likely to be involved in the perception of the plant branching hormone, strigolactone. Curr. Biol. 22, 2032-2036 (2012).
    • (2012) Curr. Biol , vol.22 , pp. 2032-2036
    • Hamiaux, C.1
  • 32
    • 84873058168 scopus 로고    scopus 로고
    • Structures of D14 and D14L in the strigolactone and karrikin signaling pathways
    • Kagiyama, M. et al. Structures of D14 and D14L in the strigolactone and karrikin signaling pathways. Genes Cells 18, 147-160 (2013).
    • (2013) Genes Cells , vol.18 , pp. 147-160
    • Kagiyama, M.1
  • 33
    • 84901649603 scopus 로고    scopus 로고
    • DELLA protein functions as a transcriptional activator through the DNA binding of the INDETERMINATE DOMAIN family proteins
    • Yoshida, H. et al. DELLA protein functions as a transcriptional activator through the DNA binding of the INDETERMINATE DOMAIN family proteins. Proc. Natl Acad. Sci. USA 111, 7861-7866 (2014).
    • (2014) Proc. Natl Acad. Sci. USA , vol.111 , pp. 7861-7866
    • Yoshida, H.1
  • 34
    • 84907364310 scopus 로고    scopus 로고
    • DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis
    • Fukazawa, J. et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell 26, 2920-2938 (2014).
    • (2014) Plant Cell , vol.26 , pp. 2920-2938
    • Fukazawa, J.1
  • 35
    • 0031045585 scopus 로고    scopus 로고
    • Preparation of selenomethionyl proteins for phase determination
    • Doublié, S. Preparation of selenomethionyl proteins for phase determination. Methods Enzymol. 276, 523-530 (1997).
    • (1997) Methods Enzymol , vol.276 , pp. 523-530
    • Doublié, S.1
  • 36
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • Otwinowski, Z. & Minor, W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326 (1997).
    • (1997) Methods Enzymol , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 39
    • 13244281317 scopus 로고    scopus 로고
    • Coot model-building tools for molecular graphics
    • Emsley, P. & Cowtan, K. Coot: model-building tools for molecular graphics. Acta Crystallogr. D 60, 2126-2132 (2004).
    • (2004) Acta Crystallogr. D , vol.60 , pp. 2126-2132
    • Emsley, P.1    Cowtan, K.2
  • 40
    • 76449098262 scopus 로고    scopus 로고
    • PHENIX: A comprehensive Python-based system for macromolecular structure solution
    • Adams, P. D. et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D 66, 213-221 (2010).
    • (2010) Acta Crystallogr. D , vol.66 , pp. 213-221
    • Adams, P.D.1
  • 41
    • 34447508216 scopus 로고    scopus 로고
    • Phaser crystallographic software
    • McCoy, A. J. et al. Phaser crystallographic software. J. Appl. Cryst. 40, 658-674 (2007).
    • (2007) J. Appl. Cryst , vol.40 , pp. 658-674
    • McCoy, A.J.1
  • 42
    • 36448991500 scopus 로고    scopus 로고
    • Clustal W and Clustal X version 2.0
    • Larkin, M. A. et al. Clustal W and Clustal X version 2.0. Bioinformatics 23, 2947-2948 (2007).
    • (2007) Bioinformatics , vol.23 , pp. 2947-2948
    • Larkin, M.A.1
  • 43
    • 0033824470 scopus 로고    scopus 로고
    • Dalilite workbench for protein structure comparison
    • Holm, L. & Park, J. Dalilite workbench for protein structure comparison. Bioinformatics 16, 566-567 (2000).
    • (2000) Bioinformatics , vol.16 , pp. 566-567
    • Holm, L.1    Park, J.2
  • 44
    • 0036138908 scopus 로고    scopus 로고
    • A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications
    • Nagai, T. et al. A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications. Nat. Biotechnol. 20, 87-90 (2002).
    • (2002) Nat. Biotechnol , vol.20 , pp. 87-90
    • Nagai, T.1
  • 45
    • 56649085082 scopus 로고    scopus 로고
    • A strategy for screening an inhibitor of viral silencing suppressors, which attenuates symptom development of plant viruses
    • Shimura, H. et al. A strategy for screening an inhibitor of viral silencing suppressors, which attenuates symptom development of plant viruses. FEBS Lett. 582, 4047-4052 (2008).
    • (2008) FEBS Lett , vol.582 , pp. 4047-4052
    • Shimura, H.1


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