Phylogenetic factorization of compositional data yields lineage-level associations in microbiome datasets

PeerJ

Volumn 2017, Issue 2, 2017, Pages

  Washburne, Alex D ^a   Silverman, Justin D ^a,b   Leff, Jonathan W ^c   Bennett, Dominic J ^d,e   Darcy, John L ^c   Mukherjee, Sayan ^a   Fierer, Noah ^c   David, Lawrence A ^a,b  

^a DUKE UNIVERSITY   (United States)

^b DUKE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c UNIVERSITY OF COLORADO   (United States)

^d IMPERIAL COLLEGE LONDON   (United Kingdom)

^e INSTITUTE OF ZOOLOGY   (United Kingdom)

Author keywords

Community phylogenetics; Compositional data; Factor analysis; Microbial biogeography; Microbiome; Phylofactorization; Sequence count data

Indexed keywords

ART; BIOGEOGRAPHY; FACTOR ANALYSIS; HUMAN; MICROBIOME; NONHUMAN; PHYLOGENY; SOIL MICROFLORA;

EID: 85013146734     PISSN: None     EISSN: 21678359     Source Type: Journal    
DOI: 10.7717/peerj.2969     Document Type: Article

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