메뉴 건너뛰기




Volumn 25, Issue 3, 2017, Pages 458-468

Multivariate Analyses of Quality Metrics for Crystal Structures in the PDB Archive

Author keywords

multivariate analysis; OneDep; PDB; principal component analysis; protein crystal structure; RCSB; structure quality; structure validation; wwPDB

Indexed keywords

LIGAND; PROTEIN;

EID: 85012868574     PISSN: 09692126     EISSN: 18784186     Source Type: Journal    
DOI: 10.1016/j.str.2017.01.013     Document Type: Article
Times cited : (29)

References (33)
  • 4
    • 0001644632 scopus 로고
    • Between objectivity and subjectivity
    • Brändén, C., Jones, T., Between objectivity and subjectivity. Nature 343 (1990), 687–689.
    • (1990) Nature , vol.343 , pp. 687-689
    • Brändén, C.1    Jones, T.2
  • 5
    • 0026597444 scopus 로고
    • Free R value: a novel statistical quantity for assessing the accuracy of crystal structures
    • Brünger, A.T., Free R value: a novel statistical quantity for assessing the accuracy of crystal structures. Nature 355 (1992), 472–475.
    • (1992) Nature , vol.355 , pp. 472-475
    • Brünger, A.T.1
  • 9
    • 0030022569 scopus 로고    scopus 로고
    • Report of a workshop on the use of statistical validators in protein X-ray crystallography
    • Dodson, E., Kleywegt, G.J., Wilson, K., Report of a workshop on the use of statistical validators in protein X-ray crystallography. Acta Crystallogr. D Biol. Crystallogr. 52 (1996), 228–234.
    • (1996) Acta Crystallogr. D Biol. Crystallogr. , vol.52 , pp. 228-234
    • Dodson, E.1    Kleywegt, G.J.2    Wilson, K.3
  • 10
  • 15
    • 84860138898 scopus 로고    scopus 로고
    • Structure and catalytic mechanism of LigI: insight into the amidohydrolase enzymes of cog3618 and lignin degradation
    • Hobbs, M.E., Malashkevich, V., Williams, H.J., Xu, C., Sauder, J.M., Burley, S.K., Almo, S.C., Raushel, F.M., Structure and catalytic mechanism of LigI: insight into the amidohydrolase enzymes of cog3618 and lignin degradation. Biochemistry 51 (2012), 3497–3507.
    • (2012) Biochemistry , vol.51 , pp. 3497-3507
    • Hobbs, M.E.1    Malashkevich, V.2    Williams, H.J.3    Xu, C.4    Sauder, J.M.5    Burley, S.K.6    Almo, S.C.7    Raushel, F.M.8
  • 16
    • 84889120137 scopus 로고
    • Improved methods for building protein models in electron density maps and the location of errors in these models
    • Jones, T.A., Zou, J.-Y., Cowan, S.W., Kjeldgaard, M., Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. D Biol. Crystallogr. A47 (1991), 110–119.
    • (1991) Acta Crystallogr. D Biol. Crystallogr. , vol.A47 , pp. 110-119
    • Jones, T.A.1    Zou, J.-Y.2    Cowan, S.W.3    Kjeldgaard, M.4
  • 17
    • 84922361077 scopus 로고    scopus 로고
    • The PDB_REDO server for macromolecular structure model optimization
    • Joosten, R.P., Long, F., Murshudov, G.N., Perrakis, A., The PDB_REDO server for macromolecular structure model optimization. IUCrJ 1 (2014), 213–220.
    • (2014) IUCrJ , vol.1 , pp. 213-220
    • Joosten, R.P.1    Long, F.2    Murshudov, G.N.3    Perrakis, A.4
  • 19
    • 0000243829 scopus 로고
    • PROCHECK – a programs to check the stereochemical quality of protein structures
    • Laskowski, R.A., MacArthur, M.W., Moss, D.S., Thornton, J.M., PROCHECK – a programs to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26 (1993), 283–291.
    • (1993) J. Appl. Crystallogr. , vol.26 , pp. 283-291
    • Laskowski, R.A.1    MacArthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 24
    • 19444375708 scopus 로고    scopus 로고
    • Atomic resolution structures of R-specific alcohol dehydrogenase from Lactobacillus brevis provide the structural bases of its substrate and cosubstrate specificity
    • Schlieben, N.H., Niefind, K., Muller, J., Riebel, B., Hummel, W., Schomburg, D., Atomic resolution structures of R-specific alcohol dehydrogenase from Lactobacillus brevis provide the structural bases of its substrate and cosubstrate specificity. J. Mol. Biol. 349 (2005), 801–813.
    • (2005) J. Mol. Biol. , vol.349 , pp. 801-813
    • Schlieben, N.H.1    Niefind, K.2    Muller, J.3    Riebel, B.4    Hummel, W.5    Schomburg, D.6
  • 26
    • 37549039510 scopus 로고    scopus 로고
    • A short history of SHELX
    • Sheldrick, G.M., A short history of SHELX. Acta Crystallogr. A. 64 (2008), 112–122.
    • (2008) Acta Crystallogr. A. , vol.64 , pp. 112-122
    • Sheldrick, G.M.1
  • 28
    • 33748758728 scopus 로고    scopus 로고
    • Expect the unexpected or caveat for drug designers: multiple structure determinations using aldose reductase crystals treated under varying soaking and co-crystallisation conditions
    • Steuber, H., Zentgraf, M., Gerlach, C., Sotriffer, C.A., Heine, A., Klebe, G., Expect the unexpected or caveat for drug designers: multiple structure determinations using aldose reductase crystals treated under varying soaking and co-crystallisation conditions. J. Mol. Biol. 363 (2006), 174–187.
    • (2006) J. Mol. Biol. , vol.363 , pp. 174-187
    • Steuber, H.1    Zentgraf, M.2    Gerlach, C.3    Sotriffer, C.A.4    Heine, A.5    Klebe, G.6
  • 29
    • 84860305929 scopus 로고    scopus 로고
    • Statistical quality indicators for electron-density maps
    • Tickle, I.J., Statistical quality indicators for electron-density maps. Acta Crystallogr. D Biol. Crystallogr. 68 (2012), 454–467.
    • (2012) Acta Crystallogr. D Biol. Crystallogr. , vol.68 , pp. 454-467
    • Tickle, I.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.