-
1
-
-
0028103746
-
Translational initiation on structured messengers. Another role for the Shine-Dalgarno interaction
-
de Smit MH, van Duin J. Translational initiation on structured messengers. Another role for the Shine-Dalgarno interaction. J Mol Biol 1994; 235:173-84.
-
(1994)
J Mol Biol
, vol.235
, pp. 173-184
-
-
de Smit, M.H.1
van Duin, J.2
-
2
-
-
0037783314
-
Translational repression mechanisms in prokaryotes
-
Schlax PJ, Worhunsky D. Translational repression mechanisms in prokaryotes. Mol Microbiol 2003; 48:1157-69.
-
(2003)
Mol Microbiol
, vol.48
, pp. 1157-1169
-
-
Schlax, P.J.1
Worhunsky, D.2
-
3
-
-
45749086072
-
RNA switches regulate initiation of translation in bacteria
-
Marzi S, Fechter P, Chevalier C, Romby P, Geissmann T. RNA switches regulate initiation of translation in bacteria. Biol Chem 2008; 389:585-98.
-
(2008)
Biol Chem
, vol.389
, pp. 585-598
-
-
Marzi, S.1
Fechter, P.2
Chevalier, C.3
Romby, P.4
Geissmann, T.5
-
4
-
-
66349113529
-
The role of mRNA structure in translational control in bacteria
-
Geissmann T, Marzi S, Romby P. The role of mRNA structure in translational control in bacteria. RNA Biol 2009; 6:153-60.
-
(2009)
RNA Biol
, vol.6
, pp. 153-160
-
-
Geissmann, T.1
Marzi, S.2
Romby, P.3
-
5
-
-
0038210214
-
Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria
-
Mandal M, Boese B, Barrick JE, Winkler WC, Breaker RR. Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria. Cell 2003; 113:577-86.
-
(2003)
Cell
, vol.113
, pp. 577-586
-
-
Mandal, M.1
Boese, B.2
Barrick, J.E.3
Winkler, W.C.4
Breaker, R.R.5
-
8
-
-
33750043437
-
Translation initiation and the fate of bacterial mRNAs
-
Kaberdin VR, Bläsi U. Translation initiation and the fate of bacterial mRNAs. FEMS Microbiol Rev 2006; 30:967-79.
-
(2006)
FEMS Microbiol Rev
, vol.30
, pp. 967-979
-
-
Kaberdin, V.R.1
Bläsi, U.2
-
9
-
-
27644482393
-
-
Deana A, Belasco JG. Lost in translation: the influence of ribosomes on bacterial mRNA decay. Genes Dev 2005; 19:2526-33.
-
Deana A, Belasco JG. Lost in translation: the influence of ribosomes on bacterial mRNA decay. Genes Dev 2005; 19:2526-33.
-
-
-
-
10
-
-
63749126957
-
Expanding roles for metabolite-sensing regulatory RNAs
-
Dambach MD, Winkler WC. Expanding roles for metabolite-sensing regulatory RNAs. Curr Opin Microbiol 2009; 12:161-9.
-
(2009)
Curr Opin Microbiol
, vol.12
, pp. 161-169
-
-
Dambach, M.D.1
Winkler, W.C.2
-
11
-
-
27144527479
-
Regulation of bacterial gene expression by riboswitches
-
Winkler WC, Breaker RR. Regulation of bacterial gene expression by riboswitches. Annu Rev Microbiol 2005; 59:487-517.
-
(2005)
Annu Rev Microbiol
, vol.59
, pp. 487-517
-
-
Winkler, W.C.1
Breaker, R.R.2
-
12
-
-
0038341634
-
RNA-mediated control of virulence gene expression in bacterial pathogens
-
Johansson J, Cossart P. RNA-mediated control of virulence gene expression in bacterial pathogens. Trends Microbiol 2003; 11:280-5.
-
(2003)
Trends Microbiol
, vol.11
, pp. 280-285
-
-
Johansson, J.1
Cossart, P.2
-
13
-
-
0346220279
-
Temperature-controlled structural alterations of an RNA thermometer
-
Chowdhury S, Ragaz C, Kreuger E, Narberhaus F. Temperature-controlled structural alterations of an RNA thermometer. J Biol Chem 2003; 278:47915-21.
-
(2003)
J Biol Chem
, vol.278
, pp. 47915-47921
-
-
Chowdhury, S.1
Ragaz, C.2
Kreuger, E.3
Narberhaus, F.4
-
14
-
-
0142075327
-
Genetic control by metabolite-binding riboswitches
-
Winkler WC, Breaker RR. Genetic control by metabolite-binding riboswitches. Chembiochem 2003; 4:1024-32.
-
(2003)
Chembiochem
, vol.4
, pp. 1024-1032
-
-
Winkler, W.C.1
Breaker, R.R.2
-
15
-
-
0038136962
-
Metabolite-binding RNA domains are present in the genes of eukaryotes
-
Sudarsan N, Barrick JE, Breaker RR. Metabolite-binding RNA domains are present in the genes of eukaryotes. RNA 2003; 9:644-7.
-
(2003)
RNA
, vol.9
, pp. 644-647
-
-
Sudarsan, N.1
Barrick, J.E.2
Breaker, R.R.3
-
16
-
-
34547873145
-
Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline
-
Weinberg Z, Barrick JE, Yao Z, Roth A, Kim JN, Gore J, et al. Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline. Nucleic Acids Res 2007; 35:4809-19.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 4809-4819
-
-
Weinberg, Z.1
Barrick, J.E.2
Yao, Z.3
Roth, A.4
Kim, J.N.5
Gore, J.6
-
17
-
-
2342511433
-
New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control
-
Barrick JE, Corbino KA, Winkler WC, Nahvi A, Mandal M, Collins J, et al. New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control. Proc Natl Acad Sci USA 2004; 101:6421-6.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 6421-6426
-
-
Barrick, J.E.1
Corbino, K.A.2
Winkler, W.C.3
Nahvi, A.4
Mandal, M.5
Collins, J.6
-
18
-
-
35248843565
-
Genome-wide bioinformatic prediction and experimental evaluation of potential RNA thermometers
-
Waldminghaus T, Gaubig LC, Narberhaus F. Genome-wide bioinformatic prediction and experimental evaluation of potential RNA thermometers. Mol Genet Genomics 2007; 278:555-64.
-
(2007)
Mol Genet Genomics
, vol.278
, pp. 555-564
-
-
Waldminghaus, T.1
Gaubig, L.C.2
Narberhaus, F.3
-
19
-
-
60549112198
-
Temperature sensors of eubacteria
-
Schumann W. Temperature sensors of eubacteria. Adv Appl Microbiol 2009; 67:213-56.
-
(2009)
Adv Appl Microbiol
, vol.67
, pp. 213-256
-
-
Schumann, W.1
-
21
-
-
0043123153
-
-
Hofacker IL. Vienna RNA secondary structure server. Nucleic Acids Res 2003; 31:3429-31.
-
Hofacker IL. Vienna RNA secondary structure server. Nucleic Acids Res 2003; 31:3429-31.
-
-
-
-
22
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 2003; 31:3406-15.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
23
-
-
0024786853
-
Alternative mRNA structures of the cIII gene of bacteriophage l determine the rate of its translation initiation
-
Altuvia S, Kornitzer D, Teff D, Oppenheim AB. Alternative mRNA structures of the cIII gene of bacteriophage l determine the rate of its translation initiation. J Mol Biol 1989; 210:265-80.
-
(1989)
J Mol Biol
, vol.210
, pp. 265-280
-
-
Altuvia, S.1
Kornitzer, D.2
Teff, D.3
Oppenheim, A.B.4
-
24
-
-
37349084275
-
Posttranscriptional regulation of cspE in Escherichia coli: Involvement of the short 5′-untranslated region
-
Uppal S, Akkipeddi VS, Jawali N. Posttranscriptional regulation of cspE in Escherichia coli: involvement of the short 5′-untranslated region. FEMS Microbiol Lett 2008; 279:83-91.
-
(2008)
FEMS Microbiol Lett
, vol.279
, pp. 83-91
-
-
Uppal, S.1
Akkipeddi, V.S.2
Jawali, N.3
-
25
-
-
0032720089
-
Mutation analysis of the 5′ untranslated region of the cold shock cspA mRNA of Escherichia coli
-
Yamanaka K, Mitta M, Inouye M. Mutation analysis of the 5′ untranslated region of the cold shock cspA mRNA of Escherichia coli. J Bacteriol 1999; 181:6284-91.
-
(1999)
J Bacteriol
, vol.181
, pp. 6284-6291
-
-
Yamanaka, K.1
Mitta, M.2
Inouye, M.3
-
26
-
-
0031023549
-
Promoter-independent cold-shock induction of cspA and its derepression at 37°C by mRNA stabilization
-
Fang L, Jiang W, Bae W, Inouye M. Promoter-independent cold-shock induction of cspA and its derepression at 37°C by mRNA stabilization. Mol Microbiol 1997; 23:355-64.
-
(1997)
Mol Microbiol
, vol.23
, pp. 355-364
-
-
Fang, L.1
Jiang, W.2
Bae, W.3
Inouye, M.4
-
27
-
-
0034917249
-
ROSE elements occur in disparate rhizobia and are functionally interchangeable between species
-
Nocker A, Krstulovic NP, Perret X, Narberhaus F. ROSE elements occur in disparate rhizobia and are functionally interchangeable between species. Arch Microbiol 2001; 176:44-51.
-
(2001)
Arch Microbiol
, vol.176
, pp. 44-51
-
-
Nocker, A.1
Krstulovic, N.P.2
Perret, X.3
Narberhaus, F.4
-
28
-
-
0035584137
-
mRNA-based thermosensor controls expression of rhizobial heat shock genes
-
Nocker A, Hausherr T, Balsiger S, Krstulovic NP, Hennecke H, Narberhaus F. mRNA-based thermosensor controls expression of rhizobial heat shock genes. Nucleic Acids Res 2001; 29:4800-7.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 4800-4807
-
-
Nocker, A.1
Hausherr, T.2
Balsiger, S.3
Krstulovic, N.P.4
Hennecke, H.5
Narberhaus, F.6
-
29
-
-
0036195722
-
α-Crystallin-type heat shock proteins: Socializing minichaperones in the context of a multichaperone network
-
Narberhaus F. α-Crystallin-type heat shock proteins: Socializing minichaperones in the context of a multichaperone network. Microbiol Mol Biol Rev 2002; 66:64-93.
-
(2002)
Microbiol Mol Biol Rev
, vol.66
, pp. 64-93
-
-
Narberhaus, F.1
-
30
-
-
0031920693
-
A novel DNA element that controls bacterial heat shock gene expression
-
Narberhaus F, Käser R, Nocker A, Hennecke H. A novel DNA element that controls bacterial heat shock gene expression. Mol Microbiol 1998; 28:315-23.
-
(1998)
Mol Microbiol
, vol.28
, pp. 315-323
-
-
Narberhaus, F.1
Käser, R.2
Nocker, A.3
Hennecke, H.4
-
31
-
-
85046914523
-
-
Waldminghaus T, Gaubig LC, Klinkert B, Narberhaus F. The Escherichia coli ibpA thermometer is comprised of stable and unstable structural elements. RNA Biol 2009; 6:in press.
-
Waldminghaus T, Gaubig LC, Klinkert B, Narberhaus F. The Escherichia coli ibpA thermometer is comprised of stable and unstable structural elements. RNA Biol 2009; 6:in press.
-
-
-
-
32
-
-
33745744196
-
Molecular basis for temperature sensing by an RNA thermometer
-
Chowdhury S, Maris C, Allain FH, Narberhaus F. Molecular basis for temperature sensing by an RNA thermometer. EMBO J 2006; 25:2487-97.
-
(2006)
EMBO J
, vol.25
, pp. 2487-2497
-
-
Chowdhury, S.1
Maris, C.2
Allain, F.H.3
Narberhaus, F.4
-
33
-
-
66549094626
-
The long and the short of riboswitches
-
Serganov A. The long and the short of riboswitches. Curr Opin Struct Biol 2009; 19:251-9.
-
(2009)
Curr Opin Struct Biol
, vol.19
, pp. 251-259
-
-
Serganov, A.1
-
34
-
-
0025166089
-
Secondary structure of the ribosome binding site determines translational efficiency: A quantitative analysis
-
de Smit MH, van Duin J. Secondary structure of the ribosome binding site determines translational efficiency: a quantitative analysis. Proc Natl Acad Sci USA 1990; 87:7668-72.
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, pp. 7668-7672
-
-
de Smit, M.H.1
van Duin, J.2
-
36
-
-
0027141070
-
Temperature sensing in Yersinia pestis: Translation of the LcrF activator protein is thermally regulated
-
Hoe NP, Goguen JD. Temperature sensing in Yersinia pestis: translation of the LcrF activator protein is thermally regulated. J Bacteriol 1993; 175:7901-9.
-
(1993)
J Bacteriol
, vol.175
, pp. 7901-7909
-
-
Hoe, N.P.1
Goguen, J.D.2
-
37
-
-
67349277053
-
-
15N-labeled RNA oligonucleotides. J Biomol NMR 2009; 44:101-5.
-
15N-labeled RNA oligonucleotides. J Biomol NMR 2009; 44:101-5.
-
-
-
-
38
-
-
0033559035
-
An RNA thermometer
-
Storz G. An RNA thermometer. Genes Dev 1999; 13:633-6.
-
(1999)
Genes Dev
, vol.13
, pp. 633-636
-
-
Storz, G.1
-
39
-
-
0001897486
-
The heat shock response: Regulation and function
-
Storz G, Hengge-Aronis R, eds, ASM Press, Washington D.C
-
Yura T, Kanemori M, Morita MT. The heat shock response: regulation and function. In Bacterial stress responses (Storz G, Hengge-Aronis R, eds.). ASM Press 2000; 3-18 Washington D.C.
-
(2000)
Bacterial stress responses
, pp. 3-18
-
-
Yura, T.1
Kanemori, M.2
Morita, M.T.3
-
41
-
-
0032959546
-
32 in Escherichia coli: Structural and functional dissection of rpoH mRNA secondary structure
-
32 in Escherichia coli: structural and functional dissection of rpoH mRNA secondary structure. J Bacteriol 1999; 181:401-10.
-
(1999)
J Bacteriol
, vol.181
, pp. 401-410
-
-
Morita, M.1
Kanemori, M.2
Yanagi, H.3
Yura, T.4
-
42
-
-
0037031594
-
An RNA thermosensor controls expression of virulence genes in Listeria monocytogenes
-
Johansson J, Mandin P, Renzoni A, Chiaruttini C, Springer M, Cossart P. An RNA thermosensor controls expression of virulence genes in Listeria monocytogenes. Cell 2002; 110:551-61.
-
(2002)
Cell
, vol.110
, pp. 551-561
-
-
Johansson, J.1
Mandin, P.2
Renzoni, A.3
Chiaruttini, C.4
Springer, M.5
Cossart, P.6
-
43
-
-
0030900288
-
Evidence that PrfA, the pleiotropic activator of virulence genes in Listeria monocytogenes, can be present but inactive
-
Renzoni A, Klarsfeld A, Dramsi S, Cossart P. Evidence that PrfA, the pleiotropic activator of virulence genes in Listeria monocytogenes, can be present but inactive. Infect Immun 1997; 65:1515-8.
-
(1997)
Infect Immun
, vol.65
, pp. 1515-1518
-
-
Renzoni, A.1
Klarsfeld, A.2
Dramsi, S.3
Cossart, P.4
-
44
-
-
56049106809
-
Design of simple synthetic RNA thermometers for temperature-controlled gene expression in Escherichia coli
-
Neupert J, Karcher D, Bock R. Design of simple synthetic RNA thermometers for temperature-controlled gene expression in Escherichia coli. Nucleic Acids Res 2008; 36:124.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 124
-
-
Neupert, J.1
Karcher, D.2
Bock, R.3
-
48
-
-
51949087754
-
Convergence of molecular, modeling, and systems approaches for an understanding of the Escherichia coli heat shock response
-
Guisbert E, Yura T, Rhodius VA, Gross CA. Convergence of molecular, modeling, and systems approaches for an understanding of the Escherichia coli heat shock response. Microbiol Mol Biol Rev 2008; 72:545-54.
-
(2008)
Microbiol Mol Biol Rev
, vol.72
, pp. 545-554
-
-
Guisbert, E.1
Yura, T.2
Rhodius, V.A.3
Gross, C.A.4
|