메뉴 건너뛰기




Volumn 6, Issue 4, 2009, Pages 434-445

Auto-assembly of E. coli DsrA small noncoding RNA: Molecular characteristics and functional consequences

Author keywords

DsrA; Macromolecule auto assembly; RNA degradation; RNA nanostructure; Small non coding RNA; Translational control

Indexed keywords


EID: 85011936093     PISSN: 15476286     EISSN: 15558584     Source Type: Journal    
DOI: 10.4161/rna.6.4.8949     Document Type: Article
Times cited : (20)

References (49)
  • 1
    • 4344682527 scopus 로고    scopus 로고
    • The small RNA regulators of Escherichia coli: Roles and mechanisms*
    • Gottesman S. The small RNA regulators of Escherichia coli: roles and mechanisms*. Annu Rev Microbiol 2004; 58:303-328
    • (2004) Annu Rev Microbiol , vol.58 , pp. 303-328
    • Gottesman, S.1
  • 4
    • 33847363604 scopus 로고    scopus 로고
    • Spectroscopic observation of RNA chaperone activities of Hfq in post-transcriptional regulation by a small non-coding RNA
    • DOI 10.1093/nar/gkl1124
    • Arluison V, Hohng S, Roy R, Pellegrini O, Regnier P, Ha T. Spectroscopic observation of RNA chaperone activities of Hfq in post-transcriptional regulation by a small noncoding RNA. Nucleic Acids Res 2007; 35:999-1006. (Pubitemid 46344724)
    • (2007) Nucleic Acids Research , vol.35 , Issue.3 , pp. 999-1006
    • Arluison, V.1    Hohng, S.2    Roy, R.3    Pellegrini, O.4    Regnier, P.5    Ha, T.6
  • 5
    • 34247109118 scopus 로고    scopus 로고
    • Hfq structure, function and ligand binding
    • Brennan RG, Link TM. Hfq structure, function and ligand binding. Curr Opin Microbiol 2007; 10:125-133
    • (2007) Curr Opin Microbiol , vol.10 , pp. 125-133
    • Brennan, R.G.1    Link, T.M.2
  • 6
    • 0036163624 scopus 로고    scopus 로고
    • The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs
    • DOI 10.1016/S1097-2765(01)00437-3
    • Zhang A, Wassarman KM, Ortega J, Steven AC, Storz G. The Sm-like Hfq Protein Increases OxyS RNA Interaction with Target mRNAs. Mol Cell 2002; 9:11-22. (Pubitemid 34127767)
    • (2002) Molecular Cell , vol.9 , Issue.1 , pp. 11-22
    • Zhang, A.1    Wassarman, K.M.2    Ortega, J.3    Steven, A.C.4    Storz, G.5
  • 7
    • 34247158257 scopus 로고    scopus 로고
    • Mechanism of RNA silencing by Hfq-binding small RNAs
    • DOI 10.1016/j.mib.2007.03.010, PII S1369527407000276, Cell Regulation (RNA Special Issue)
    • Aiba H. Mechanism of RNA silencing by Hfq-binding small RNAs. Curr Opin Microbiol 2007; 10:134-139 (Pubitemid 46590050)
    • (2007) Current Opinion in Microbiology , vol.10 , Issue.2 , pp. 134-139
    • Aiba, H.1
  • 8
    • 0035100582 scopus 로고    scopus 로고
    • Regulation of RpoS by a novel small RNA: The characterization of RprA
    • DOI 10.1046/j.1365-2958.2001.02329.x
    • Majdalani N, Chen S, Murrow J, St. John K, Gottesman S. Regulation of RpoS by a novel small RNA: the characterization of RprA. Mol Microbiol 2001; 39:1382-1394 (Pubitemid 32225146)
    • (2001) Molecular Microbiology , vol.39 , Issue.5 , pp. 1382-1394
    • Majdalani, N.1    Chen, S.2    Murrow, J.3    St John, K.4    Gottesman, S.5
  • 11
    • 0036899077 scopus 로고    scopus 로고
    • Stationary phase gene regulation: What makes an Escherichia coli promoter sigmaS-selective?
    • Hengge-Aronis R. Stationary phase gene regulation: what makes an Escherichia coli promoter sigmaS-selective? Curr Opin Microbiol 2002; 5:591-595
    • (2002) Curr Opin Microbiol , vol.5 , pp. 591-595
    • Hengge-Aronis, R.1
  • 12
    • 0036714331 scopus 로고    scopus 로고
    • s (RpoS) subunit of RNA polymerase
    • DOI 10.1128/MMBR.66.3.373-395.2002
    • Hengge-Aronis R. Signal transduction and regulatory mechanisms involved in control of the sigma(S) (RpoS) subunit of RNA polymerase. Microbiol Mol Biol Rev 2002; 66:373-395 (Pubitemid 35001135)
    • (2002) Microbiology and Molecular Biology Reviews , vol.66 , Issue.3 , pp. 373-395
    • Hengge-Aronis, R.1
  • 13
    • 0036198628 scopus 로고    scopus 로고
    • Recent insights into the general stress response regulatory network in Escherichia coli
    • Hengge-Aronis R. Recent insights into the general stress response regulatory network in Escherichia coli. J Mol Microbiol Biotechnol 2002; 4:341-346 (Pubitemid 34256711)
    • (2002) Journal of Molecular Microbiology and Biotechnology , vol.4 , Issue.3 , pp. 341-346
    • Hengge-Aronis, R.1
  • 14
    • 0030029879 scopus 로고    scopus 로고
    • Osmotic shock induction of capsule synthesis in Escherichia coli K-12
    • Sledjeski DD, Gottesman S. Osmotic shock induction of capsule synthesis in Escherichia coli K-12. J Bacteriol 1996; 178:1204-1206
    • (1996) J Bacteriol , vol.178 , pp. 1204-1206
    • Sledjeski, D.D.1    Gottesman, S.2
  • 15
    • 0029739317 scopus 로고    scopus 로고
    • The small RNA, DsrA, is essential for the low temperature expression of RpoS during exponential growth in Escherichia coli
    • Sledjeski DD, Gupta A, Gottesman S. The small RNA, DsrA, is essential for the low temperature expression of RpoS during exponential growth in Escherichia coli. EMBO J 1996; 15:3993-4000. (Pubitemid 26289809)
    • (1996) EMBO Journal , vol.15 , Issue.15 , pp. 3993-4000
    • Sledjeski, D.D.1    Gupta, A.2    Gottesman, S.3
  • 16
    • 0028957883 scopus 로고
    • A small RNA acts as an antisilencer of the H-NS-silenced rcsA gene of Escherichia coli
    • Sledjeski D, Gottesman S. A small RNA acts as an antisilencer of the H-NS-silenced rcsA gene of Escherichia coli. Proc Natl Acad Sci USA 1995; 92:2003-2007
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 2003-2007
    • Sledjeski, D.1    Gottesman, S.2
  • 17
    • 0035104707 scopus 로고    scopus 로고
    • Hfq is necessary for regulation by the untranslated RNA DsrA
    • DOI 10.1128/JB.183.6.1997-2005.2001
    • Sledjeski DD, Whitman C, Zhang A. HFq is necessary for regulation by the untranslated RNA DsrA. J Bacteriol 2001; 183:1997-2005. (Pubitemid 32225995)
    • (2001) Journal of Bacteriology , vol.183 , Issue.6 , pp. 1997-2005
    • Sledjeski, D.D.1    Whitman, C.2    Zhang, A.3
  • 18
    • 0034730125 scopus 로고    scopus 로고
    • A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures
    • Lease RA, Belfort M. A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures. Proc Natl Acad Sci USA 2000; 97:9919-9924
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 9919-9924
    • Lease, R.A.1    Belfort, M.2
  • 19
    • 9244253711 scopus 로고    scopus 로고
    • Cycling of the Sm-like protein Hfq on the DsrA small regulatory RNA
    • DOI 10.1016/j.jmb.2004.10.006, PII S0022283604012872
    • Lease RA, Woodson SA. Cycling of the Sm-like protein Hfq on the DsrA small regulatory RNA. J Mol Biol 2004; 344:1211-1223 (Pubitemid 39550474)
    • (2004) Journal of Molecular Biology , vol.344 , Issue.5 , pp. 1211-1223
    • Lease, R.A.1    Woodson, S.A.2
  • 20
    • 0038187589 scopus 로고    scopus 로고
    • Small non-coding RNAs, co-ordinators of adaptation processes in Escherichia coli: The RpoS paradigm
    • Repoila F, Majdalani N, Gottesman S. Small non-coding RNAs, co-ordinators of adaptation processes in Escherichia coli: the RpoS paradigm. Mol Microbiol 2003; 48:855-861
    • (2003) Mol Microbiol , vol.48 , pp. 855-861
    • Repoila, F.1    Majdalani, N.2    Gottesman, S.3
  • 21
    • 44949145107 scopus 로고    scopus 로고
    • Predicting novel RNA-RNA interactions
    • Meyer IM. Predicting novel RNA-RNA interactions. Curr Opin Struct Biol 2008.
    • (2008) Curr Opin Struct Biol
    • Meyer, I.M.1
  • 23
    • 0346341029 scopus 로고    scopus 로고
    • TectoRNA and 'kissing-loop' RNA: Atomic force microscopy of self-assembling RNA structures
    • DOI 10.1111/j.1365-2818.2003.01276.x
    • Hansma HG, Oroudjev E, Baudrey S, Jaeger L. TectoRNA and 'kissing-loop' RNA: atomic force microscopy of self-assembling RNA structures. J Microsc 2003; 212:273-279 (Pubitemid 38028525)
    • (2003) Journal of Microscopy , vol.212 , Issue.3 , pp. 273-279
    • Hansma, H.G.1    Oroudjev, E.2    Baudrey, S.3    Jaeger, L.4
  • 24
    • 33746655784 scopus 로고    scopus 로고
    • The architectonics of programmable RNA and DNA nanostructures
    • DOI 10.1016/j.sbi.2006.07.001, PII S0959440X06001187
    • Jaeger L, Chworos A. The architectonics of programmable RNA and DNA nanostructures. Curr Opin Struct Biol 2006; 16:531-543 (Pubitemid 44149075)
    • (2006) Current Opinion in Structural Biology , vol.16 , Issue.4 , pp. 531-543
    • Jaeger, L.1    Chworos, A.2
  • 27
    • 33646345371 scopus 로고    scopus 로고
    • Evaluation of the Dynamic Structure of DsrA RNA from E. coli and Its Functional Consequences
    • Rolle K, Zywicki M, Wyszko E, Barciszewska MZ, Barciszewski J. Evaluation of the Dynamic Structure of DsrA RNA from E. coli and Its Functional Consequences. J Biochem (Tokyo) 2006; 139:431-438
    • (2006) J Biochem (Tokyo) , vol.139 , pp. 431-438
    • Rolle, K.1    Zywicki, M.2    Wyszko, E.3    Barciszewska, M.Z.4    Barciszewski, J.5
  • 28
    • 0031547961 scopus 로고    scopus 로고
    • Solution structure of the conserved 16 S-like ribosomal RNA UGAA tetraloop
    • DOI 10.1006/jmbi.1997.0964
    • Butcher SE, Dieckmann T, Feigon J. Solution structure of the conserved 16 S-like ribosomal RNA UGAA tetraloop. J Mol Biol 1997; 268:348-358 (Pubitemid 27208059)
    • (1997) Journal of Molecular Biology , vol.268 , Issue.2 , pp. 348-358
    • Butcher, S.E.1    Dieckmann, T.2    Feigon, J.3
  • 29
    • 33846899951 scopus 로고    scopus 로고
    • Influence of cationic molecules on the hairpin to duplex equilibria of self-complementary DNA and RNA oligonucleotides
    • DOI 10.1093/nar/gkl1073
    • Nakano S, Kirihata T, Fujii S, Sakai H, Kuwahara M, Sawai H, Sugimoto N. Influence of cationic molecules on the hairpin to duplex equilibria of self-complementary DNA and RNA oligonucleotides. Nucleic Acids Res 2007; 35:486-494 (Pubitemid 46232065)
    • (2007) Nucleic Acids Research , vol.35 , Issue.2 , pp. 486-494
    • Nakano, S.-I.1    Kirihata, T.2    Fujii, S.3    Sakai, H.4    Kuwahara, M.5    Sawai, H.6    Sugimoto, N.7
  • 30
    • 36248946677 scopus 로고    scopus 로고
    • Conversion of stable RNA hairpin to a metastable dimer in frozen solution
    • DOI 10.1261/rna.433307
    • Sun X, Li JM, Wartell RM. Conversion of stable RNA hairpin to a metastable dimer in frozen solution. Rna 2007; 13:2277-2286 (Pubitemid 350127567)
    • (2007) RNA , vol.13 , Issue.12 , pp. 2277-2286
    • Sun, X.1    Li, J.M.2    Wartell, R.M.3
  • 33
    • 0014684414 scopus 로고
    • Infrared spectra of transfer RNA's II. Formylmethionine transfer RNA from Escherichia coli in aqueous solution
    • Tsuboi M, Higuchi S, Kyogoku Y, Nishimura S. Infrared spectra of transfer RNA's II. Formylmethionine transfer RNA from Escherichia coli in aqueous solution. Biochim Biophys Acta 1969; 19:23-28
    • (1969) Biochim Biophys Acta , vol.19 , pp. 23-28
    • Tsuboi, M.1    Higuchi, S.2    Kyogoku, Y.3    Nishimura, S.4
  • 34
    • 0242575015 scopus 로고    scopus 로고
    • Temperature sensing by the dsrA promoter
    • Repoila F, Gottesman S. Temperature sensing by the dsrA promoter. J Bacteriol 2003; 185:6609-6614
    • (2003) J Bacteriol , vol.185 , pp. 6609-6614
    • Repoila, F.1    Gottesman, S.2
  • 35
    • 33750043437 scopus 로고    scopus 로고
    • Translation initiation and the fate of bacterial mRNAs
    • DOI 10.1111/j.1574-6976.2006.00043.x
    • Kaberdin L, Blasi U. Translation initiation and the fate of bacterial mRNAs. FEMS Microbiol Rev 2006; 30:967-979 (Pubitemid 44583798)
    • (2006) FEMS Microbiology Reviews , vol.30 , Issue.6 , pp. 967-979
    • Kaberdin, V.R.1    Blasi, U.2
  • 36
    • 33847386673 scopus 로고    scopus 로고
    • Translational control and target recognition by Escherichia coli small RNAs in vivo
    • Urban JH, Vogel J. Translational control and target recognition by Escherichia coli small RNAs in vivo. Nucleic Acids Res 2007; 35:1018-1037
    • (2007) Nucleic Acids Res , vol.35 , pp. 1018-1037
    • Urban, J.H.1    Vogel, J.2
  • 37
    • 0025033465 scopus 로고
    • The cleavage specificity of RNase III
    • Krinke L, Wulff DL. The cleavage specificity of RNase III. Nucleic Acids Res 1990; 18:4809-4815
    • (1990) Nucleic Acids Res , vol.18 , pp. 4809-4815
    • Krinke, L.1    Wulff, D.L.2
  • 38
    • 0347519274 scopus 로고    scopus 로고
    • The poly(A) binding protein Hfq protects RNA from RNase e and exoribonucleolytic degradation
    • DOI 10.1093/nar/gkg915
    • Folichon M, Arluison V, Pellegrini O, Huntzinger E, Regnier P, Hajnsdorf E. The poly(A) binding protein Hfq protects RNA from RNase E and exoribonucleolytic degradation. Nucleic Acids Res 2003; 31:7302-7310 (Pubitemid 38008458)
    • (2003) Nucleic Acids Research , vol.31 , Issue.24 , pp. 7302-7310
    • Folichon, M.1    Arluison, V.2    Pellegrini, O.3    Huntzinger, E.4    Regnier, P.5    Hajnsdorf, E.6
  • 40
    • 0037466534 scopus 로고    scopus 로고
    • Only one pRNA hexamer but multiple copies of the DNA-packaging protein gp16 are needed for the motor to package bacterial virus phi29 genomic DNA
    • DOI 10.1016/S0042-6822(03)00011-4
    • Shu D, Guo P. Only one pRNA hexamer but multiple copies of the DNA-packaging protein gp16 are needed for the motor to package bacterial virus phi29 genomic DNA. Virology 2003; 309:108-113 (Pubitemid 36506594)
    • (2003) Virology , vol.309 , Issue.1 , pp. 108-113
    • Shu, D.1    Guo, P.2
  • 41
    • 0033834945 scopus 로고    scopus 로고
    • Probing the structure of monomers and dimers of the bacterial virus phi29 hexamer RNA complex by chemical modification
    • Trottier M, Mat-Arip Y, Zhang C, Chen C, Sheng S, Shao Z, Guo P. Probing the structure of monomers and dimers of the bacterial virus phi29 hexamer RNA complex by chemical modification. Rna 2000; 6:1257-1266
    • (2000) Rna , vol.6 , pp. 1257-1266
    • Trottier, M.1    Mat-Arip, Y.2    Zhang, C.3    Chen, C.4    Sheng, S.5    Shao, Z.6    Guo, P.7
  • 42
    • 0034232357 scopus 로고    scopus 로고
    • The G x U wobble base pair. a fundamental building block of RNA structure crucial to RNA function in diverse biological systems
    • Varani G, McClain WH. The G x U wobble base pair. A fundamental building block of RNA structure crucial to RNA function in diverse biological systems. EMBO Rep 2000; 1:18-23.
    • (2000) EMBO Rep , vol.1 , pp. 18-23
    • Varani, G.1    McClain, W.H.2
  • 43
    • 0034978781 scopus 로고    scopus 로고
    • Signal transduction cascade for regulation of RpoS: Temperature regulation of DsrA
    • DOI 10.1128/JB.183.13.4012-4023.2001
    • Repoila F, Gottesman S. Signal transduction cascade for regulation of RpoS: temperature regulation of DsrA. J Bacteriol 2001; 183:4012-4023 (Pubitemid 32565482)
    • (2001) Journal of Bacteriology , vol.183 , Issue.13 , pp. 4012-4023
    • Repoila, F.1    Gottesman, S.2
  • 44
    • 34047242982 scopus 로고    scopus 로고
    • Mechanism of copper mediated triple helix formation at neutral pH in Drosophila satellite repeats
    • DOI 10.1529/biophysj.106.099788
    • Paris C, Geinguenaud F, Gouyette C, Liquier J, Lacoste J. Mechanism of copper mediated triple helix formation at neutral pH in Drosophila satellite repeats. Biophys J 2007; 92:2498-2506 (Pubitemid 46536431)
    • (2007) Biophysical Journal , vol.92 , Issue.7 , pp. 2498-2506
    • Paris, C.1    Geinguenaud, F.2    Gouyette, C.3    Liquier, J.4    Lacoste, J.5
  • 45
    • 0014725117 scopus 로고
    • Oligonucleotide interactions 3. Circular dichroism studies of the conformation of deoxyoligonucleotides
    • Cantor CR, Warshaw MM, Shapiro H. Oligonucleotide interactions 3. Circular dichroism studies of the conformation of deoxyoligonucleotides. Biopolymers 1970; 9:1059-1077
    • (1970) Biopolymers , vol.9 , pp. 1059-1077
    • Cantor, C.R.1    Warshaw, M.M.2    Shapiro, H.3
  • 46
    • 4444380263 scopus 로고    scopus 로고
    • Triple helix formation with Drosophila satellite repeats. Unexpected stabilization by copper ions
    • Horn V, Lacroix L, Gautier T, Takasugi M, Mergny JL, Lacoste J. Triple helix formation with Drosophila satellite repeats. Unexpected stabilization by copper ions. Biochemistry 2004; 43:11196-11205
    • (2004) Biochemistry , vol.43 , pp. 11196-11205
    • Horn, V.1    Lacroix, L.2    Gautier, T.3    Takasugi, M.4    Mergny, J.L.5    Lacoste, J.6
  • 48
    • 0034652188 scopus 로고    scopus 로고
    • Host factor HFq of Escherichia coli stimulates elongation of poly(A) tails by poly(A)polymerase I
    • Hajnsdorf E, Régnier P. Host factor HFq of Escherichia coli stimulates elongation of poly(A) tails by poly(A)polymerase I. Proc Natl Acad Sc USA 2000; 97:1501-1505
    • (2000) Proc Natl Acad Sc USA , vol.97 , pp. 1501-1505
    • Hajnsdorf, E.1    Régnier, P.2
  • 49
    • 0038136948 scopus 로고    scopus 로고
    • Contribution of DNA conformation and topology in right-handed DNA wrapping by the Bacillus subtilis LrpC protein
    • Beloin C, Jeusset J, Revet B, Mirambeau G, Le Hegarat F, Le Cam E. Contribution of DNA conformation and topology in right-handed DNA wrapping by the Bacillus subtilis LrpC protein. J Biol Chem 2003; 278:5333-5342
    • (2003) J Biol Chem , vol.278 , pp. 5333-5342
    • Beloin, C.1    Jeusset, J.2    Revet, B.3    Mirambeau, G.4    Le Hegarat, F.5    Le Cam, E.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.