Prediction of Rho-independent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop structures
d'Aubenton Carafa Y, Brody E, Thermes C. Prediction of Rho-independent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop structures. J Mol Biol 1990; 216:835-58.
RNAMotif, an RNA secondary structure definition and search algorithm
Macke TJ, Ecker DJ, Gutell RR, Gautheret D, Case DA, Sampath R. RNAMotif, an RNA secondary structure definition and search algorithm. Nucleic Acids Res 2001; 29:4724-35. (Pubitemid 33095034)
Prediction of transcriptional terminators in Bacillus subtilis and related species
de Hoon MJ, Makita Y, Nakai K, Miyano S. Prediction of transcriptional terminators in Bacillus subtilis and related species. PLoS Comp Biol 2005; 1:25.
Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake
Kingsford CL, Ayanbule K, Salzberg SL. Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake. Genome Biol 2007; 8:22.
Conserved economics of transcription termination in eubacteria
Unniraman S, Prakash R, Nagaraja V. Conserved economics of transcription termination in eubacteria. Nucleic Acids Res 2002; 30:675-84. (Pubitemid 34679632)
Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles
DOI 10.1006/jmbi.2001.5102
Gautheret D, Lambert A. Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles. J Mol Biol 2001; 313:1003-11. (Pubitemid 33081896)
Fast Folding and Comparison of RNA Secondary Structures
Hofacker IL, Fontana W, Stadler PF, Bonhoeffer S, Tacker M, Schuster P. Fast Folding and Comparison of RNA Secondary Structures. Monatshefte f. Chemie 1994; 125:167-88.