Complete genome sequence of Pseudomonas aeruginosa phage-resistant variant PA1RG

Genome Announcements

Volumn 4, Issue 1, 2016, Pages

  Li, Gang ^a   Lu, Shuguang ^a   Shen, Mengyu ^a   Le, Shuai ^a   Tan, Yinling ^a   Li, Ming ^a   Zhao, Xia ^a   Wang, Jing ^a   Shen, Wei ^a   Guo, Keke ^a   Yang, Yuhui ^a   Zhu, Hongbin ^a   Li, Shu ^a   Zhu, Junmin ^a   Rao, Xiancai ^a   Hu, Fuquan ^a  

^a THIRD MILITARY MEDICAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85010022009     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.01761-15     Document Type: Article

References (17)

1. Stover CK, Pham XQ, Erwin AL, Mizoguchi SD, Warrener P, Hickey MJ, Brinkman FS, Hufnagle WO, Kowalik DJ, Lagrou M, Garber RL, Goltry L, Tolentino E, Westbrock-Wadman S, Yuan Y, Brody LL, Coulter SN, Folger KR, Kas A, Larbig K, Lim R, Smith K, Spencer D, Wong GK, Wu Z, Paulsen IT, Reizer J, Saier MH, Hancock RE, Lory S, Olson MV. 2000. Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen. Nature 406:959-964. http://dx.doi.org/10.1038/35023079.
2. Kung VL, Ozer EA, Hauser AR. 2010. The accessory genome of Pseudomonas aeruginosa. Microbiol Mol Biol Rev 74:621-641. http://dx.doi.org/10.1128/MMBR.00027-10.
3. Turner KH, Wessel AK, Palmer GC, Murray JL, Whiteley M. 2015. Essential genome of Pseudomonas aeruginosa in cystic fibrosis sputum. Proc Natl Acad Sci USA 112:4110-4115. http://dx.doi.org/10.1073/pnas.1419677112.
4. Taylor PK, Yeung AT, Hancock RE. 2014. Antibiotic resistance in Pseudomonas aeruginosa biofilms: towards the development of novel antibiofilm therapies. J Biotechnol 191:121-130. http://dx.doi.org/10.1016/j.jbiotec.2014.09.003.
5. Breidenstein EBM, de la Fuente-Núñez C, Hancock REW. 2011. Pseudomonas aeruginosa: all roads lead to resistance. Trends Microbiol 19: 419-426. http://dx.doi.org/10.1016/j.tim.2011.04.005.
6. Chaturongakul S, Ounjai P. 2014. Phage-host interplay: examples from tailed phages and gram-negative bacterial pathogens. Front Microbiol 5:442. http://dx.doi.org/10.3389/fmicb.2014.00442.
7. Samson JE, Magadán AH, Sabri M, Moineau S. 2013. Revenge of the phages: defeating bacterial defences. Nat Rev Microbiol 11:675-687. http://dx.doi.org/10.1038/nrmicro3096.
8. Le S, Yao X, Lu S, Tan Y, Rao X, Li M, Jin X, Wang J, Zhao Y, Wu NC, Lux R, He X, Shi W, Hu F. 2014. Chromosomal DNA deletion confers phage resistance to Pseudomonas aeruginosa. Sci Rep 4:4738. http://dx.doi.org/10.1038/srep04738.
9. Hosseinidoust Z, Tufenkji N, van de Ven TG. 2013. Formation of biofilms under phage predation: considerations concerning a biofilm increase. Biofouling 29:457-468. http://dx.doi.org/10.1080/08927014.2013.779370.
10. Hosseinidoust Z, van de Ven TGM, Tufenkji N. 2013. Evolution of Pseudomonas aeruginosa virulence as a result of phage predation. Appl Environ Microbiol 79:6110-6116. http://dx.doi.org/10.1128/AEM.01421-13.
11. Brockhurst MA, Buckling A, Rainey PB. 2005. The effect of a bacteriophage on diversification of the opportunistic bacterial pathogen, Pseudomonas aeruginosa. Proc Biol Sci 272:1385-1391. http://dx.doi.org/10.1098/rspb.2005.3086.
12. Lu S, Le S, Tan Y, Zhu J, Li M, Rao X, Zou L, Li S, Wang J, Jin X, Huang G, Zhang L, Zhao X, Hu F. 2013. Genomic and proteomic analyses of the terminally redundant genome of the Pseudomonas aeruginosa phage PaP1: establishment of genus PaP1-like phages. PLoS One 8:e62933. http://dx.doi.org/10.1371/journal.pone.0062933.
13. Lu S, Le S, Li G, Shen M, Tan Y, Zhao X, Wang J, Shen W, Guo K, Yang Y, Zhu H, Li S, Li M, Zhu J, Rao X, Hu F. 2015. Complete genome sequence of Pseudomonas aeruginosa PA1, isolated from a patient with a respiratory tract infection. Genome Announc 3(6):e01453-15. http://dx.doi.org/10.1128/genomeA.01453-15.
14. Roberts RJ, Carneiro MO, Schatz MC. 2013. The advantages of SMRT sequencing. Genome Biol 14:405.
15. Gulati A, Swarnkar MK, Vyas P, Rahi P, Thakur R, Thakur N, Singh AK. 2015. Complete genome sequence of the rhizobacterium Pseudomonas trivialis strain IHBB745 with multiple plant growth-promoting activities and tolerance to desiccation and alkalinity. Genome Announc 3(5): e00943-15. http://dx.doi.org/10.1128/genomeA.00943-15.
16. Chin CS, Alexander DH, Marks P, Klammer AA, Drake J, Heiner C, Clum A, Copeland A, Huddleston J, Eichler EE, Turner SW, Korlach J. 2013 Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat Methods 10:563-569. http://dx.doi.org/10.1038/nmeth.2474.
17. Angiuoli SV, Gussman A, Klimke W, Cochrane G, Field D, Garrity G, Kodira CD, Kyrpides N, Madupu R, Markowitz V, Tatusova T, Thomson N, White O. 2008. Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation. Omics 12: 137-141. http://dx.doi.org/10.1089/omi.2008.0017.