-
1
-
-
0028799334
-
Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations
-
Gauthier G, Gauthier M, Christen R. 1995. Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations. Int J Syst Bacteriol 45:755-761. http://dx.doi.org/10.1099/00207713-45-4-755.
-
(1995)
Int J Syst Bacteriol
, vol.45
, pp. 755-761
-
-
Gauthier, G.1
Gauthier, M.2
Christen, R.3
-
2
-
-
0032704521
-
Marine Pseudoalteromonas species are associated with higher organisms and produce biologically active extracellular agents
-
Holmström C, Kjelleberg S. 1999. Marine Pseudoalteromonas species are associated with higher organisms and produce biologically active extracellular agents. FEMS Microbiol Ecol 30:285-293.
-
(1999)
FEMS Microbiol Ecol
, vol.30
, pp. 285-293
-
-
Holmström, C.1
Kjelleberg, S.2
-
3
-
-
70349454241
-
Molecular analysis of the gene encoding a cold-adapted halophilic subtilase from deep-sea psychrotolerant bacterium Pseudoalteromonas sp. SM9913: cloning, expression, characterization and function analysis of the C-terminal PPC domains
-
Yan BQ, Chen XL, Hou XY, He H, Zhou BC, Zhang YZ. 2009. Molecular analysis of the gene encoding a cold-adapted halophilic subtilase from deep-sea psychrotolerant bacterium Pseudoalteromonas sp. SM9913: cloning, expression, characterization and function analysis of the C-terminal PPC domains. Extremophiles 13:725-733. http://dx.doi.org/10.1007/s00792-009-0263-1.
-
(2009)
Extremophiles
, vol.13
, pp. 725-733
-
-
Yan, B.Q.1
Chen, X.L.2
Hou, X.Y.3
He, H.4
Zhou, B.C.5
Zhang, Y.Z.6
-
4
-
-
84891900312
-
Pseudoalteromonas shioyasakiensis sp. nov., a marine polysaccharide-producing bacterium
-
Matsuyama H, Sawazaki K, Minami H, Kasahara H, Horikawa K, Yumoto I. 2014. Pseudoalteromonas shioyasakiensis sp. nov., a marine polysaccharide-producing bacterium. Int J Syst Evol Microbiol 64: 101-106. http://dx.doi.org/10.1099/ijs.0.055558-0.
-
(2014)
Int J Syst Evol Microbiol
, vol.64
, pp. 101-106
-
-
Matsuyama, H.1
Sawazaki, K.2
Minami, H.3
Kasahara, H.4
Horikawa, K.5
Yumoto, I.6
-
5
-
-
0018800089
-
A rapid alkaline extraction procedure for screening recombinant plasmid DNA
-
Birnboim HC, Doly J. 1979. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res 7:1513-1523. http://dx.doi.org/10.1093/nar/7.6.1513.
-
(1979)
Nucleic Acids Res
, vol.7
, pp. 1513-1523
-
-
Birnboim, H.C.1
Doly, J.2
-
6
-
-
79952422304
-
Quality control and preprocessing of metagenomic datasets
-
Schmieder R, Edwards R. 2011. Quality control and preprocessing of metagenomic datasets. Bioinformatics 27:863-864. http://dx.doi.org/10.1093/bioinformatics/btr026.
-
(2011)
Bioinformatics
, vol.27
, pp. 863-864
-
-
Schmieder, R.1
Edwards, R.2
-
7
-
-
40049104732
-
SOAP: short oligonucleotide alignment program
-
Li R, Li Y, Kristiansen K, Wang J. 2008. SOAP: short oligonucleotide alignment program. Bioinformatics 24:713-714. http://dx.doi.org/10.1093/bioinformatics/btn025.
-
(2008)
Bioinformatics
, vol.24
, pp. 713-714
-
-
Li, R.1
Li, Y.2
Kristiansen, K.3
Wang, J.4
-
8
-
-
75649124547
-
De novo assembly of human genomes with massively parallel short read sequencing
-
Li R, Zhu H, Ruan J, Qian W, Fang X, Shi Z, Li Y, Li S, Shan G, Kristiansen K, Li S, Yang H, Wang J, Wang J. 2010. De novo assembly of human genomes with massively parallel short read sequencing. Genome Res 20:265-272. http://dx.doi.org/10.1101/gr.097261.109.
-
(2010)
Genome Res
, vol.20
, pp. 265-272
-
-
Li, R.1
Zhu, H.2
Ruan, J.3
Qian, W.4
Fang, X.5
Shi, Z.6
Li, Y.7
Li, S.8
Shan, G.9
Kristiansen, K.10
Li, S.11
Yang, H.12
Wang, J.13
Wang, J.14
-
9
-
-
84937040910
-
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
-
Parks DH, Imelfort M, Skennerton CT, Hugenholtz P, Tyson GW. 2015. CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes. Genome Res 25:1043-1055. http://dx.doi.org/10.1101/gr.186072.114.
-
(2015)
Genome Res
, vol.25
, pp. 1043-1055
-
-
Parks, D.H.1
Imelfort, M.2
Skennerton, C.T.3
Hugenholtz, P.4
Tyson, G.W.5
-
10
-
-
34147132825
-
Identifying bacterial genes and endosymbiont DNA with Glimmer
-
Delcher AL, Bratke KA, Powers EC, Salzberg SL. 2007. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23:673-679. http://dx.doi.org/10.1093/bioinformatics/btm009.
-
(2007)
Bioinformatics
, vol.23
, pp. 673-679
-
-
Delcher, A.L.1
Bratke, K.A.2
Powers, E.C.3
Salzberg, S.L.4
-
11
-
-
34250665888
-
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
-
Lagesen K, Hallin P, Rødland EA, Staerfeldt H-H, Rognes T, Ussery DW. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res 35:3100-3108. http://dx.doi.org/10.1093/nar/gkm160.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 3100-3108
-
-
Lagesen, K.1
Hallin, P.2
Rødland, E.A.3
Staerfeldt, H.-H.4
Rognes, T.5
Ussery, D.W.6
-
12
-
-
0030854739
-
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
-
Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25: 955-964. http://dx.doi.org/10.1093/nar/25.5.0955.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
13
-
-
84891804612
-
The seed and the rapid annotation of microbial genomes using subsystems technology (RAST)
-
Overbeek R, Olson R, Pusch GD, Olsen GJ, Davis JJ, Disz T, Edwards RA, Gerdes S, Parrello B, Shukla M, Vonstein V, Wattam AR, Xia F, Stevens R. 2014. The seed and the rapid annotation of microbial genomes using subsystems technology (RAST). Nucleic Acids Res 42:D206-D214. http://dx.doi.org/10.1093/nar/gkt1226.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D206-D214
-
-
Overbeek, R.1
Olson, R.2
Pusch, G.D.3
Olsen, G.J.4
Davis, J.J.5
Disz, T.6
Edwards, R.A.7
Gerdes, S.8
Parrello, B.9
Shukla, M.10
Vonstein, V.11
Wattam, A.R.12
Xia, F.13
Stevens, R.14
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