메뉴 건너뛰기




Volumn 4, Issue 2, 2016, Pages

Draft genome sequence of Pseudoalteromonas sp. strain XI10 isolated from the brine-seawater interface of Erba Deep in the Red Sea

Author keywords

[No Author keywords available]

Indexed keywords


EID: 85009895222     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00109-16     Document Type: Article
Times cited : (3)

References (13)
  • 1
    • 0028799334 scopus 로고
    • Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations
    • Gauthier G, Gauthier M, Christen R. 1995. Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations. Int J Syst Bacteriol 45:755-761. http://dx.doi.org/10.1099/00207713-45-4-755.
    • (1995) Int J Syst Bacteriol , vol.45 , pp. 755-761
    • Gauthier, G.1    Gauthier, M.2    Christen, R.3
  • 2
    • 0032704521 scopus 로고    scopus 로고
    • Marine Pseudoalteromonas species are associated with higher organisms and produce biologically active extracellular agents
    • Holmström C, Kjelleberg S. 1999. Marine Pseudoalteromonas species are associated with higher organisms and produce biologically active extracellular agents. FEMS Microbiol Ecol 30:285-293.
    • (1999) FEMS Microbiol Ecol , vol.30 , pp. 285-293
    • Holmström, C.1    Kjelleberg, S.2
  • 3
    • 70349454241 scopus 로고    scopus 로고
    • Molecular analysis of the gene encoding a cold-adapted halophilic subtilase from deep-sea psychrotolerant bacterium Pseudoalteromonas sp. SM9913: cloning, expression, characterization and function analysis of the C-terminal PPC domains
    • Yan BQ, Chen XL, Hou XY, He H, Zhou BC, Zhang YZ. 2009. Molecular analysis of the gene encoding a cold-adapted halophilic subtilase from deep-sea psychrotolerant bacterium Pseudoalteromonas sp. SM9913: cloning, expression, characterization and function analysis of the C-terminal PPC domains. Extremophiles 13:725-733. http://dx.doi.org/10.1007/s00792-009-0263-1.
    • (2009) Extremophiles , vol.13 , pp. 725-733
    • Yan, B.Q.1    Chen, X.L.2    Hou, X.Y.3    He, H.4    Zhou, B.C.5    Zhang, Y.Z.6
  • 4
    • 84891900312 scopus 로고    scopus 로고
    • Pseudoalteromonas shioyasakiensis sp. nov., a marine polysaccharide-producing bacterium
    • Matsuyama H, Sawazaki K, Minami H, Kasahara H, Horikawa K, Yumoto I. 2014. Pseudoalteromonas shioyasakiensis sp. nov., a marine polysaccharide-producing bacterium. Int J Syst Evol Microbiol 64: 101-106. http://dx.doi.org/10.1099/ijs.0.055558-0.
    • (2014) Int J Syst Evol Microbiol , vol.64 , pp. 101-106
    • Matsuyama, H.1    Sawazaki, K.2    Minami, H.3    Kasahara, H.4    Horikawa, K.5    Yumoto, I.6
  • 5
    • 0018800089 scopus 로고
    • A rapid alkaline extraction procedure for screening recombinant plasmid DNA
    • Birnboim HC, Doly J. 1979. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res 7:1513-1523. http://dx.doi.org/10.1093/nar/7.6.1513.
    • (1979) Nucleic Acids Res , vol.7 , pp. 1513-1523
    • Birnboim, H.C.1    Doly, J.2
  • 6
    • 79952422304 scopus 로고    scopus 로고
    • Quality control and preprocessing of metagenomic datasets
    • Schmieder R, Edwards R. 2011. Quality control and preprocessing of metagenomic datasets. Bioinformatics 27:863-864. http://dx.doi.org/10.1093/bioinformatics/btr026.
    • (2011) Bioinformatics , vol.27 , pp. 863-864
    • Schmieder, R.1    Edwards, R.2
  • 7
    • 40049104732 scopus 로고    scopus 로고
    • SOAP: short oligonucleotide alignment program
    • Li R, Li Y, Kristiansen K, Wang J. 2008. SOAP: short oligonucleotide alignment program. Bioinformatics 24:713-714. http://dx.doi.org/10.1093/bioinformatics/btn025.
    • (2008) Bioinformatics , vol.24 , pp. 713-714
    • Li, R.1    Li, Y.2    Kristiansen, K.3    Wang, J.4
  • 9
    • 84937040910 scopus 로고    scopus 로고
    • CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
    • Parks DH, Imelfort M, Skennerton CT, Hugenholtz P, Tyson GW. 2015. CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes. Genome Res 25:1043-1055. http://dx.doi.org/10.1101/gr.186072.114.
    • (2015) Genome Res , vol.25 , pp. 1043-1055
    • Parks, D.H.1    Imelfort, M.2    Skennerton, C.T.3    Hugenholtz, P.4    Tyson, G.W.5
  • 10
    • 34147132825 scopus 로고    scopus 로고
    • Identifying bacterial genes and endosymbiont DNA with Glimmer
    • Delcher AL, Bratke KA, Powers EC, Salzberg SL. 2007. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23:673-679. http://dx.doi.org/10.1093/bioinformatics/btm009.
    • (2007) Bioinformatics , vol.23 , pp. 673-679
    • Delcher, A.L.1    Bratke, K.A.2    Powers, E.C.3    Salzberg, S.L.4
  • 12
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
    • Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25: 955-964. http://dx.doi.org/10.1093/nar/25.5.0955.
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.