-
1
-
-
84897068942
-
Biological control of plant pathogens: advantages and limitations seen through the case study of Pythium oligandrum
-
Gerbore J, Benhamou N, Vallance J, Le Floch G, Grizard D, Regnault-Roger C, Rey P. 2014. Biological control of plant pathogens: advantages and limitations seen through the case study of Pythium oligandrum. Environ Sci Pollut Res Int 21:4847-4860. http://dx.doi.org/10.1007/s11356-013-1807-6.
-
(2014)
Environ Sci Pollut Res Int
, vol.21
, pp. 4847-4860
-
-
Gerbore, J.1
Benhamou, N.2
Vallance, J.3
Le Floch, G.4
Grizard, D.5
Regnault-Roger, C.6
Rey, P.7
-
2
-
-
84907889097
-
Characterization of Pythium oligandrum populations that colonise the rhizosphere of vines from the Bordeaux region
-
Gerbore J, Vallance J, Yacoub A, Delmotte F, Grizard D, Regnault-Roger C, Rey P. 2014. Characterization of Pythium oligandrum populations that colonise the rhizosphere of vines from the Bordeaux region. FEMS Microbiol Eco 90:153-167. http://dx.doi.org/10.1111/1574-6941.12380.
-
(2014)
FEMS Microbiol Eco
, vol.90
, pp. 153-167
-
-
Gerbore, J.1
Vallance, J.2
Yacoub, A.3
Delmotte, F.4
Grizard, D.5
Regnault-Roger, C.6
Rey, P.7
-
3
-
-
84940992036
-
Ability of Pythium oligandrum strains to protect Vitis vinifera L., by inducing plant resistance against Phaeomoniella chlamydospora, a pathogen involved in Esca, a grapevine trunk disease
-
Yacoub A, Gerbore J, Magnin N, Chambon P, Dufour MC, Corio-Costet MF, Guyoneaud R, Rey P. 2016. Ability of Pythium oligandrum strains to protect Vitis vinifera L., by inducing plant resistance against Phaeomoniella chlamydospora, a pathogen involved in Esca, a grapevine trunk disease. Biol Contr 92:7-16. http://dx.doi.org/10.1016/j.biocontrol.2015.08.005.
-
(2016)
Biol Contr
, vol.92
, pp. 7-16
-
-
Yacoub, A.1
Gerbore, J.2
Magnin, N.3
Chambon, P.4
Dufour, M.C.5
Corio-Costet, M.F.6
Guyoneaud, R.7
Rey, P.8
-
4
-
-
84864483625
-
RobiNA: a user-friendly, integrated software solution for RNA-Seqbased transcriptomics
-
Lohse M, Bolger AM, Nagel A, Fernie AR, Lunn JE, Stitt M, Usadel B. 2012. RobiNA: a user-friendly, integrated software solution for RNA-Seqbased transcriptomics. Nucleic Acids Res 40:W622-W627.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. W622-W627
-
-
Lohse, M.1
Bolger, A.M.2
Nagel, A.3
Fernie, A.R.4
Lunn, J.E.5
Stitt, M.6
Usadel, B.7
-
5
-
-
84860771820
-
SPAdes: a new genome assembly algorithm and its applications to singlecell sequencing
-
Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA. 2012. SPAdes: a new genome assembly algorithm and its applications to singlecell sequencing. J Comput Biol 19:455-477.
-
(2012)
J Comput Biol
, vol.19
, pp. 455-477
-
-
Bankevich, A.1
Nurk, S.2
Antipov, D.3
Gurevich, A.A.4
Dvorkin, M.5
Kulikov, A.S.6
Lesin, V.M.7
Nikolenko, S.I.8
Pham, S.9
Prjibelski, A.D.10
Pyshkin, A.V.11
Sirotkin, A.V.12
Vyahhi, N.13
Tesler, G.14
Alekseyev, M.A.15
Pevzner, P.A.16
-
6
-
-
84891349005
-
Informed and automated k-mer size selection for genome assembly
-
Chikhi R, Medvedev P. 2014. Informed and automated k-mer size selection for genome assembly. Bioinformatics 30:31-37. http://dx.doi.org/10.1093/bioinformatics/btt310.
-
(2014)
Bioinformatics
, vol.30
, pp. 31-37
-
-
Chikhi, R.1
Medvedev, P.2
-
7
-
-
84876266928
-
QUAST: quality assessment tool for genome assemblies
-
Gurevich A, Saveliev V, Vyahhi N, Tesler G. 2013. QUAST: quality assessment tool for genome assemblies. Bioinformatics 29:1072-1075. http://dx.doi.org/10.1093/bioinformatics/btt086.
-
(2013)
Bioinformatics
, vol.29
, pp. 1072-1075
-
-
Gurevich, A.1
Saveliev, V.2
Vyahhi, N.3
Tesler, G.4
-
8
-
-
84940907209
-
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
-
Simão F, Waterhouse RM, Ioannidis P, Kriventseva EV, Zdobnov EM. 2015. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics 31:3210-3212. http://dx.doi.org/10.1093/bioinformatics/btv351.
-
(2015)
Bioinformatics
, vol.31
, pp. 3210-3212
-
-
Simão, F.1
Waterhouse, R.M.2
Ioannidis, P.3
Kriventseva, E.V.4
Zdobnov, E.M.5
-
9
-
-
77954417202
-
Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire
-
Lévesque CA, Brouwer H, Cano L, Hamilton JP, Holt C, Huitema E, Raffaele S, Robideau GP, Thines M, Win J, Zerillo MM, Beakes GW, Boore JL, Busam D, Dumas B, Ferriera S, Fuerstenberg SI, Gachon CMM, Gaulin E, Govers F, Grenville-Briggs L, Horner N, Hostetler J, Jiang RHY, Johnson J, Krajaejun T, Lin H, Meijer HJG, Moore B, Morris P, Phuntmart V, Puiu D, Shetty J, Stajich JE, Tripathy S, Wawra S, van West P, Whitty BR, Coutinho PM, Henrissat B, Martin F, Thomas PD, Tyler BM, De Vries RP, Kamoun S, Yandell M, Tisserat N, Buell CR. 2010. Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire. Genome Biol 11:R73. http://dx.doi.org/10.1186/gb-2010-11-7-r73.
-
(2010)
Genome Biol
, vol.11
-
-
Lévesque, C.A.1
Brouwer, H.2
Cano, L.3
Hamilton, J.P.4
Holt, C.5
Huitema, E.6
Raffaele, S.7
Robideau, G.P.8
Thines, M.9
Win, J.10
Zerillo, M.M.11
Beakes, G.W.12
Boore, J.L.13
Busam, D.14
Dumas, B.15
Ferriera, S.16
Fuerstenberg, S.I.17
Gachon, C.M.M.18
Gaulin, E.19
Govers, F.20
Grenville-Briggs, L.21
Horner, N.22
Hostetler, J.23
Jiang, R.H.Y.24
Johnson, J.25
Krajaejun, T.26
Lin, H.27
Meijer, H.J.G.28
Moore, B.29
Morris, P.30
Phuntmart, V.31
Puiu, D.32
Shetty, J.33
Stajich, J.E.34
Tripathy, S.35
Wawra, S.36
van West, P.37
Whitty, B.R.38
Coutinho, P.M.39
Henrissat, B.40
Martin, F.41
Thomas, P.D.42
Tyler, B.M.43
De Vries, R.P.44
Kamoun, S.45
Yandell, M.46
Tisserat, N.47
Buell, C.R.48
more..
-
10
-
-
85009859965
-
-
Broad Institute, Cambridge, MA
-
Broad Institute. 2015. Phytophthora parasitica. Broad Institute, Cambridge, MA. https://olive.broadinstitute.org/projects/phytophthora_parasitica.
-
(2015)
Phytophthora parasitica
-
-
-
11
-
-
40049091292
-
Using native and syntenically mapped cDNA alignments to improve de novo gene finding
-
Stanke M, Diekhans M, Baertsch R, Haussler D. 2008. Using native and syntenically mapped cDNA alignments to improve de novo gene finding. Bioinformatics 24:637-644. http://dx.doi.org/10.1093/bioinformatics/btn013.
-
(2008)
Bioinformatics
, vol.24
, pp. 637-644
-
-
Stanke, M.1
Diekhans, M.2
Baertsch, R.3
Haussler, D.4
-
12
-
-
84891763855
-
The Carbohydrate-Active enZYmes database (CAZy) in 2013
-
Lombard V, Golaconda Ramulu H, Drula E, Coutinho PM, Henrissat B. 2014. The Carbohydrate-Active enZYmes database (CAZy) in 2013. Nucleic Acids Res 42:D490-D495. http://dx.doi.org/10.1093/nar/gkt1178.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D490-D495
-
-
Lombard, V.1
Golaconda Ramulu, H.2
Drula, E.3
Coutinho, P.M.4
Henrissat, B.5
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