Lung Gene Expression Analysis (LGEA): An integrative web portal for comprehensive gene expression data analysis in lung development

Thorax

Volumn 72, Issue 5, 2017, Pages 481-484

  Du, Yina ^a   Kitzmiller, Joseph A ^a   Sridharan, Anusha ^a   Perl, Anne K ^a   Bridges, James P ^a   Misra, Ravi S ^b   Pryhuber, Gloria S ^b   Mariani, Thomas J ^b   Bhattacharya, Soumyaroop ^b   Guo, Minzhe ^a   Potter, S Steven ^a   Dexheimer, Phillip ^a   Aronow, Bruce ^a   Jobe, Alan H ^a   Whitsett, Jeffrey A ^a   Xu, Yan ^a  

^a CINCINNATI CHILDREN'S HOSPITAL MEDICAL CENTER   (United States)

^b UNIVERSITY OF ROCHESTER MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELL DIFFERENTIATION; CELL POPULATION; DATA BASE; DEVELOPMENTAL STAGE; ENDOTHELIUM CELL; EPITHELIUM CELL; GENE EXPRESSION; GENE IDENTIFICATION; IMMUNOCOMPETENT CELL; INFORMATION PROCESSING; INFORMATION RETRIEVAL; LUNG DEVELOPMENT; LUNG PARENCHYMA; MESENCHYME CELL; NONHUMAN; PRIORITY JOURNAL; REVIEW; RNA SEQUENCE; WEB BROWSER; ANIMAL; BIOLOGY; CHROMOSOMAL MAPPING; GENE EXPRESSION PROFILING; GROWTH, DEVELOPMENT AND AGING; HUMAN; INTERNET; LUNG; MOUSE; PROCEDURES; SOFTWARE;

TRANSCRIPTION FACTOR;

ANIMALS; CHROMOSOME MAPPING; COMPUTATIONAL BIOLOGY; GENE EXPRESSION; GENE EXPRESSION PROFILING; HUMANS; INTERNET; LUNG; MICE; SOFTWARE; TRANSCRIPTION FACTORS;

EID: 85009460396     PISSN: 00406376     EISSN: 14683296     Source Type: Journal    
DOI: 10.1136/thoraxjnl-2016-209598     Document Type: Review

References (5)

1. Du Y, Guo M, Whitsett JA, et al. 'LungGENS': a web-based tool for mapping single-cell gene expression in the developing lung. Thorax 2015;70:1092-4.
2. Guo M, Wang H, Potter SS, et al. SINCERA: a Pipeline for Single-Cell RNA-Seq Profiling Analysis. PLoS Comput Biol 2015;11:e1004575.
3. Xu Y, Wang Y, Besnard V, et al. Transcriptional programs controlling perinatal lung maturation. PLoS ONE 2012;7:e37046.
4. Mariani TJ, Reed JJ, Shapiro SD. Expression profiling of the developing mouse lung: insights into the establishment of the extracellular matrix. Am J Respir Cell Mol Biol 2002;26:541-8.
5. Macosko EZ, Basu A, Satija R, et al. Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets. Cell 2015;161:1202-14.