Complete genome sequence of a porcine epidemic diarrhea virus from a novel outbreak in Belgium, January 2015

Genome Announcements

Volumn 3, Issue 3, 2015, Pages

  Theuns, Sebastiaan ^a   Conceição Neto, Nádia ^b   Christiaens, Isaura ^a   Zeller, Mark ^b   Desmarets, Lowiese M B ^a   Roukaerts, Inge D M ^a   Acar, Delphine D ^a   Heylen, Elisabeth ^b   Matthijnssens, Jelle ^b   Nauwynck, Hans J ^a  

^a GHENT UNIVERSITY   (Belgium)

^b REGA INSTITUTE FOR MEDICAL RESEARCH   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85008500463     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00506-15     Document Type: Article

References (14)

1. Martelli P, Lavazza A, Nigrelli AD, Merialdi G, Alborali LG, Pensaert MB. 2008. Epidemic of diarrhoea caused by porcine epidemic diarrhoea virus in Italy. Vet Rec 162:307-310. http://dx.doi.org/10.1136/vr.162.10.307.
2. Pensaert MB, de Bouck P. 1978. A new coronavirus-like particle associated with diarrhea in swine. Arch Virol 58:243-247. http://dx.doi.org/10.1007/BF01317606.
3. Luo Y, Zhang J, Deng X, Ye Y, Liao M, Fan H. 2012. Complete genome sequence of a highly prevalent isolate of porcine epidemic diarrhea virus in South China. J Virol 86:9551. http://dx.doi.org/10.1128/JVI.01455-12.
4. Gao Y, Kou Q, Ge X, Zhou L, Guo X, Yang H. 2013. Phylogenetic analysis of porcine epidemic diarrhea virus field strains prevailing recently in China. Arch Virol 158:711-715. http://dx.doi.org/10.1007/s00705-012-1541-2.
5. Fan H, Zhang J, Ye Y, Tong T, Xie K, Liao M. 2012. Complete genome sequence of a novel porcine epidemic diarrhea virus in south China. J Virol 86:10248-10249. http://dx.doi.org/10.1128/JVI.01589-12.
6. Vlasova AN, Marthaler D, Wang Q, Culhane MR, Rossow KD, Rovira A, Collins J, Saif LJ. 2014. Distinct characteristics and complex evolution of PEDV strains, North America, May 2013-February 2014. Emerg Infect Dis 20:1620-1628. http://dx.doi.org/10.3201/eid2010.140491.
7. Jung K, Wang Q, Scheuer KA, Lu Z, Zhang Y, Saif LJ. 2014. Pathology of US porcine epidemic diarrhea virus strain PC21A in gnotobiotic pigs. Emerg Infect Dis 20:662-665. http://dx.doi.org/10.3201/eid2004.131685.
8. Marthaler D, Jiang Y, Otterson T, Goyal S, Rossow K, Collins J. 2013. Complete genome sequence of porcine epidemic diarrhea virus strain USA/Colorado/2013 from the United States. Genome Announc 1(4): e00555-13. http://dx.doi.org/10.1128/genomeA.00555-13.
9. Stevenson GW, Hoang H, Schwartz KJ, Burrough ER, Sun D, Madson D, Cooper VL, Pillatzki A, Gauger P, Schmitt BJ, Koster LG, Killian ML, Yoon KJ. 2013. Emergence of Porcine epidemic diarrhea virus in the United States: clinical signs, lesions, and viral genomic sequences. J Vet Diagn Invest 25:649-654. http://dx.doi.org/10.1177/1040638713501675.
10. Chen Q, Li G, Stasko J, Thomas JT, Stensland WR, Pillatzki AE, Gauger PC, Schwartz KJ, Madson D, Yoon KJ, Stevenson GW, Burrough ER, Harmon KM, Main RG, Zhang J. 2014. Isolation and characterization of porcine epidemic diarrhea viruses associated with the 2013 disease outbreak among swine in the United States. J Clin Microbiol 52:234-243. http://dx.doi.org/10.1128/JCM.02820-13.
11. Wang L, Byrum B, Zhang Y. 2014. New variant of porcine epidemic diarrhea virus, United States, 2014. Emerg Infect Dis 20:917-919. http://dx.doi.org/10.3201/eid2005.140195.
12. Hanke D, Jenckel M, Petrov A, Ritzmann M, Stadler J, Akimkin V, Blome S, Pohlmann A, Schirrmeier H, Beer M, Höper D. 2015. Comparison of porcine epidemic diarrhea viruses from Germany and the United States, 2014. Emerg Infect Dis 21:493-496. http://dx.doi.org/10.3201/eid2103.141165.
13. Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30:2114-2120. http://dx.doi.org/10.1093/bioinformatics/btu170.
14. Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760. http://dx.doi.org/10.1093/bioinformatics/btp324.