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Volumn 27, Issue , 2017, Pages 123-131

Forensic data and microvariant sequence characterization of 27 Y-STR loci analyzed in four Eastern African countries

Author keywords

Eastern African populations; Rapidly mutating Y STR; Y STR; Yfiler Plus

Indexed keywords

ALLELE; ARTICLE; CELL LINE; DJIBOUTI; EAST AFRICAN; ERITREA; ETHIOPIA; ETHNIC GROUP; FORENSIC GENETICS; GENE CONVERSION; GENE LOCUS; GENE MUTATION; GENE SEQUENCE; GENETIC VARIABILITY; HAPLOGROUP; HUMAN; HUMAN CELL; KENYA; MALE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SHORT TANDEM REPEAT; Y CHROMOSOME HAPLOGROUP; AFRICA; DNA FINGERPRINTING; GENETICS; GENOTYPE; MULTIPLEX POLYMERASE CHAIN REACTION; MUTATION; POPULATION GENETICS; SINGLE NUCLEOTIDE POLYMORPHISM; Y CHROMOSOME;

EID: 85008474261     PISSN: 18724973     EISSN: 18780326     Source Type: Journal    
DOI: 10.1016/j.fsigen.2016.12.015     Document Type: Article
Times cited : (59)

References (46)
  • 1
    • 71449103477 scopus 로고    scopus 로고
    • Y chromosome STR typing in crime casework
    • [1] Roewer, L., Y chromosome STR typing in crime casework. Forensic Sci. Med. Pathol. 5 (2009), 77–84.
    • (2009) Forensic Sci. Med. Pathol. , vol.5 , pp. 77-84
    • Roewer, L.1
  • 2
    • 77956393408 scopus 로고    scopus 로고
    • Mutability of Y-chromosomal microsatellites: rates, characteristics, molecular bases, and forensic implications
    • [2] Ballantyne, K.N., Goedbloed, M., Fang, R., Schaap, O., Lao, O., Wollstein, A., et al. Mutability of Y-chromosomal microsatellites: rates, characteristics, molecular bases, and forensic implications. Am. J. Hum. Genet. 87 (2010), 341–353.
    • (2010) Am. J. Hum. Genet. , vol.87 , pp. 341-353
    • Ballantyne, K.N.1    Goedbloed, M.2    Fang, R.3    Schaap, O.4    Lao, O.5    Wollstein, A.6
  • 3
    • 84857039506 scopus 로고    scopus 로고
    • A new future of forensic Y-chromosome analysis: rapidly mutating Y-STRs for differentiating male relatives and paternal lineages
    • [3] Ballantyne, K.N., Keerl, V., Wollstein, A., Choi, Y., Zuniga, S.B., Ralf, A., et al. A new future of forensic Y-chromosome analysis: rapidly mutating Y-STRs for differentiating male relatives and paternal lineages. Forensic Sci. Int. Genet. 6 (2012), 208–218.
    • (2012) Forensic Sci. Int. Genet. , vol.6 , pp. 208-218
    • Ballantyne, K.N.1    Keerl, V.2    Wollstein, A.3    Choi, Y.4    Zuniga, S.B.5    Ralf, A.6
  • 4
    • 84904433303 scopus 로고    scopus 로고
    • Toward male individualization with rapidly mutating Y-chromosomal short tandem repeats
    • [4] Ballantyne, K.N., Ralf, A., Aboukhalid, R., Achakzai, N.M., Anjos, M.J., Ayub, Q., et al. Toward male individualization with rapidly mutating Y-chromosomal short tandem repeats. Hum. Mutat. 35 (2014), 1021–1032.
    • (2014) Hum. Mutat. , vol.35 , pp. 1021-1032
    • Ballantyne, K.N.1    Ralf, A.2    Aboukhalid, R.3    Achakzai, N.M.4    Anjos, M.J.5    Ayub, Q.6
  • 5
    • 84982678265 scopus 로고    scopus 로고
    • Improving empirical evidence on differentiating closely related men with RM Y-STRs: a comprehensive pedigree study from Pakistan
    • (in press)
    • [5] Adnan, A., Ralf, A., Rakha, A., Kousouri, N., Kayser, M., Improving empirical evidence on differentiating closely related men with RM Y-STRs: a comprehensive pedigree study from Pakistan. Forensic Sci. Int. Genet., 2016 (in press).
    • (2016) Forensic Sci. Int. Genet.
    • Adnan, A.1    Ralf, A.2    Rakha, A.3    Kousouri, N.4    Kayser, M.5
  • 12
    • 84959168441 scopus 로고    scopus 로고
    • Genetic population data of Yfiler Plus kit from 1434 unrelated Hans in Henan Province (Central China)
    • [12] Wang, L., Chen, F., Kang, B., Zheng, H., Zhao, Y., Li, L., et al. Genetic population data of Yfiler Plus kit from 1434 unrelated Hans in Henan Province (Central China). Forensic Sci. Int. Genetic. 22 (2016), e25–e27.
    • (2016) Forensic Sci. Int. Genetic. , vol.22 , pp. e25-e27
    • Wang, L.1    Chen, F.2    Kang, B.3    Zheng, H.4    Zhao, Y.5    Li, L.6
  • 13
    • 18344362982 scopus 로고    scopus 로고
    • A back migration from Asia to sub-Saharan Africa is supported by high-resolution analysis of human Y-chromosome haplotypes
    • [13] Cruciani, F., Santolamazza, P., Shen, P., Macaulay, V., Moral, P., Olckers, A., et al. A back migration from Asia to sub-Saharan Africa is supported by high-resolution analysis of human Y-chromosome haplotypes. Am. J. Hum. Genet. 70 (2002), 1197–1214.
    • (2002) Am. J. Hum. Genet. , vol.70 , pp. 1197-1214
    • Cruciani, F.1    Santolamazza, P.2    Shen, P.3    Macaulay, V.4    Moral, P.5    Olckers, A.6
  • 14
    • 2342535815 scopus 로고    scopus 로고
    • Phylogeographic analysis of haplogroup E3b (E-M215) Y chromosomes reveals multiple migratory events within and out of Africa
    • [14] Cruciani, F., La Fratta, R., Santolamazza, P., Sellitto, D., Pascone, R., Moral, P., et al. Phylogeographic analysis of haplogroup E3b (E-M215) Y chromosomes reveals multiple migratory events within and out of Africa. Am. J. Hum. Genet. 74 (2004), 1014–1022.
    • (2004) Am. J. Hum. Genet. , vol.74 , pp. 1014-1022
    • Cruciani, F.1    La Fratta, R.2    Santolamazza, P.3    Sellitto, D.4    Pascone, R.5    Moral, P.6
  • 15
    • 34548091936 scopus 로고    scopus 로고
    • Tracing past human male movements in northern/eastern Africa and western Eurasia: new clues from Y-chromosomal haplogroups E-M78 and J-M12
    • [15] Cruciani, F., La Fratta, R., Trombetta, B., Santolamazza, P., Sellitto, D., Colomb, E. Beraud, et al. Tracing past human male movements in northern/eastern Africa and western Eurasia: new clues from Y-chromosomal haplogroups E-M78 and J-M12. Mol. Biol. Evol. 24 (2007), 1300–1311.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1300-1311
    • Cruciani, F.1    La Fratta, R.2    Trombetta, B.3    Santolamazza, P.4    Sellitto, D.5    Colomb, E.B.6
  • 16
    • 79958787832 scopus 로고    scopus 로고
    • A revised root for the human Y chromosomal phylogenetic tree: the origin of patrilineal diversity in Africa
    • [16] Cruciani, F., Trombetta, B., Massaia, A., Destro-Bisol, G., Sellitto, D., Scozzari, R., A revised root for the human Y chromosomal phylogenetic tree: the origin of patrilineal diversity in Africa. Am. J. Hum. Genet. 88 (2011), 814–818.
    • (2011) Am. J. Hum. Genet. , vol.88 , pp. 814-818
    • Cruciani, F.1    Trombetta, B.2    Massaia, A.3    Destro-Bisol, G.4    Sellitto, D.5    Scozzari, R.6
  • 17
    • 84941989054 scopus 로고    scopus 로고
    • Phylogeographic refinement and large scale genotyping of human Y chromosome haplogroup E provide new insights into the dispersal of early pastoralists in the African continent
    • [17] Trombetta, B., D'Atanasio, E., Massaia, A., Ippoliti, M., Coppa, A., Candilio, F., et al. Phylogeographic refinement and large scale genotyping of human Y chromosome haplogroup E provide new insights into the dispersal of early pastoralists in the African continent. Genome Biol. Evol. 7 (2015), 1940–1950.
    • (2015) Genome Biol. Evol. , vol.7 , pp. 1940-1950
    • Trombetta, B.1    D'Atanasio, E.2    Massaia, A.3    Ippoliti, M.4    Coppa, A.5    Candilio, F.6
  • 18
    • 0033762701 scopus 로고    scopus 로고
    • Y chromosome sequence variation and the history of human populations
    • [18] Underhill, P.A., Shen, P., Lin, A.A., Jin, L., Passarino, G., Yang, W.H., et al. Y chromosome sequence variation and the history of human populations. Nat. Genet. 3 (2000), 358–361.
    • (2000) Nat. Genet. , vol.3 , pp. 358-361
    • Underhill, P.A.1    Shen, P.2    Lin, A.A.3    Jin, L.4    Passarino, G.5    Yang, W.H.6
  • 19
    • 43149087535 scopus 로고    scopus 로고
    • New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree
    • [19] Karafet, T.M., Mendez, F.L., Meilerman, M.B., Underhill, P.A., Zegura, S.L., Hammer, M.F., New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree. Genome Res. 5 (2008), 830–838.
    • (2008) Genome Res. , vol.5 , pp. 830-838
    • Karafet, T.M.1    Mendez, F.L.2    Meilerman, M.B.3    Underhill, P.A.4    Zegura, S.L.5    Hammer, M.F.6
  • 20
    • 0030660620 scopus 로고    scopus 로고
    • Detection of numerous Y chromosome biallelic polymorphisms by denaturing high-performance liquid chromatography
    • [20] Underhill, P.A., Jin, L., Lin, A., Mehdi, S.Q., Jenkins, T., Vollrath, D., et al. Detection of numerous Y chromosome biallelic polymorphisms by denaturing high-performance liquid chromatography. Genome Res. 7 (1997), 996–1005.
    • (1997) Genome Res. , vol.7 , pp. 996-1005
    • Underhill, P.A.1    Jin, L.2    Lin, A.3    Mehdi, S.Q.4    Jenkins, T.5    Vollrath, D.6
  • 21
    • 0019346542 scopus 로고
    • DNA polymorphism detectable by restriction endonucleases
    • [21] Nei, M., Tajima, F., DNA polymorphism detectable by restriction endonucleases. Genetics 97 (1981), 145–163.
    • (1981) Genetics , vol.97 , pp. 145-163
    • Nei, M.1    Tajima, F.2
  • 22
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data
    • [22] Excoffier, L., Smouse, P.E., Quattro, J.M., Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131 (1992), 479–491.
    • (1992) Genetics , vol.131 , pp. 479-491
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 23
    • 77953032930 scopus 로고    scopus 로고
    • Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
    • [23] Excoffier, L., Lischer, H.E., Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol. Ecol. Res. 10 (2010), 564–567.
    • (2010) Mol. Ecol. Res. , vol.10 , pp. 564-567
    • Excoffier, L.1    Lischer, H.E.2
  • 24
    • 0028816747 scopus 로고
    • A measure of population subdivision based on microsatellite allele frequencies
    • [24] Slatkin, M., A measure of population subdivision based on microsatellite allele frequencies. Genetics 139 (1995), 457–462.
    • (1995) Genetics , vol.139 , pp. 457-462
    • Slatkin, M.1
  • 25
    • 0032900678 scopus 로고    scopus 로고
    • Median-joining networks for inferring intraspecific phylogenies
    • [25] Bandelt, H.J., Forster, P., Röhl, A., Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 16 (1999), 37–48.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 37-48
    • Bandelt, H.J.1    Forster, P.2    Röhl, A.3
  • 26
    • 63149183811 scopus 로고    scopus 로고
    • Median network analysis of defectively sequenced entire mitochondrial genomes from early and contemporary disease studies
    • [26] Bandelt, H.J., Yao, Y.G., Bravi, C.M., Salas, A., Kivisild, T., Median network analysis of defectively sequenced entire mitochondrial genomes from early and contemporary disease studies. Am. J. Hum. Genet. 54 (2009), 174–181.
    • (2009) Am. J. Hum. Genet. , vol.54 , pp. 174-181
    • Bandelt, H.J.1    Yao, Y.G.2    Bravi, C.M.3    Salas, A.4    Kivisild, T.5
  • 27
    • 84891946246 scopus 로고    scopus 로고
    • Seeing the wood for the trees: a minimal reference phylogeny for the human Y chromosome
    • [27] van Oven, M., Van Geystelen, A., Kayser, M., Decorte, R., Larmuseau, M.H., Seeing the wood for the trees: a minimal reference phylogeny for the human Y chromosome. Hum. Mutat. 35 (2014), 187–191.
    • (2014) Hum. Mutat. , vol.35 , pp. 187-191
    • van Oven, M.1    Van Geystelen, A.2    Kayser, M.3    Decorte, R.4    Larmuseau, M.H.5
  • 28
    • 84927713385 scopus 로고    scopus 로고
    • A recent bottleneck of Y chromosome diversity coincides with a global change in culture
    • [28] Karmin, M., Saag, L., Vicente, M., Wilson Sayres, M.A., Järve, M., Talas, U.G., et al. A recent bottleneck of Y chromosome diversity coincides with a global change in culture. Genome Res. 25 (2015), 459–466.
    • (2015) Genome Res. , vol.25 , pp. 459-466
    • Karmin, M.1    Saag, L.2    Vicente, M.3    Wilson Sayres, M.A.4    Järve, M.5    Talas, U.G.6
  • 29
    • 70149116309 scopus 로고    scopus 로고
    • Y-chromosome short tandem repeat intermediate variant alleles DYS392.2 DYS449.2, and DYS385.2 delineate new phylogenetic substructure in human Y-chromosome haplogroup tree
    • [29] Myres, N.M., Ritchie, K.H., Lin, A.A., Hughes, R.H., Woodward, S.R., Underhill, P.A., Y-chromosome short tandem repeat intermediate variant alleles DYS392.2 DYS449.2, and DYS385.2 delineate new phylogenetic substructure in human Y-chromosome haplogroup tree. Croat. Med. J. 50 (2009), 239–249.
    • (2009) Croat. Med. J. , vol.50 , pp. 239-249
    • Myres, N.M.1    Ritchie, K.H.2    Lin, A.A.3    Hughes, R.H.4    Woodward, S.R.5    Underhill, P.A.6
  • 32
    • 84921391454 scopus 로고    scopus 로고
    • Development of an Italian RM Y-STR haplotype database: results of the 2013 GEFI collaborative exercise
    • [32] Robino, C., Ralf, A., Pasino, S., De Marchi, M.R., Ballantyne, K.N., Barbaro, A., et al. Development of an Italian RM Y-STR haplotype database: results of the 2013 GEFI collaborative exercise. Forensic Sci. Int. Genetic. 15 (2015), 56–63.
    • (2015) Forensic Sci. Int. Genetic. , vol.15 , pp. 56-63
    • Robino, C.1    Ralf, A.2    Pasino, S.3    De Marchi, M.R.4    Ballantyne, K.N.5    Barbaro, A.6
  • 33
    • 84959318761 scopus 로고    scopus 로고
    • Analysis of 27 Y-chromosomal STR haplotypes in a Han population of Henan province, Central China
    • [33] Bai, R., Liu, Y., Zhang, J., Shi, M., Dong, H., Ma, S., et al. Analysis of 27 Y-chromosomal STR haplotypes in a Han population of Henan province, Central China. Int. J. Legal Med. 130 (2016), 1191–1194.
    • (2016) Int. J. Legal Med. , vol.130 , pp. 1191-1194
    • Bai, R.1    Liu, Y.2    Zhang, J.3    Shi, M.4    Dong, H.5    Ma, S.6
  • 34
    • 84948174316 scopus 로고    scopus 로고
    • Genetic polymorphisms and mutation rates of 27 Y-chromosomal STRs in a Han population from Guangdong Province, Southern China
    • [34] Wang, Y., Zhang, Y.J., Zhang, C.C., Li, R., Yang, Y., Ou, X.L., et al. Genetic polymorphisms and mutation rates of 27 Y-chromosomal STRs in a Han population from Guangdong Province, Southern China. Forensic Sci. Int. Genet. 21 (2016), 5–9.
    • (2016) Forensic Sci. Int. Genet. , vol.21 , pp. 5-9
    • Wang, Y.1    Zhang, Y.J.2    Zhang, C.C.3    Li, R.4    Yang, Y.5    Ou, X.L.6
  • 35
    • 34548207778 scopus 로고    scopus 로고
    • Y-chromosome short tandem repeat DYS458.2 non-consensus alleles occur independently in both binary haplogroups J1-M267 and R1b3-M405
    • [35] Myres, N.M., Ekins, J.E., Lin, A.A., Cavalli-Sforza, L.L., Woodward, S.R., Underhill, P., Y-chromosome short tandem repeat DYS458.2 non-consensus alleles occur independently in both binary haplogroups J1-M267 and R1b3-M405. Croat. Med. J. 48 (2007), 450–459.
    • (2007) Croat. Med. J. , vol.48 , pp. 450-459
    • Myres, N.M.1    Ekins, J.E.2    Lin, A.A.3    Cavalli-Sforza, L.L.4    Woodward, S.R.5    Underhill, P.6
  • 37
    • 84898824257 scopus 로고    scopus 로고
    • Gene conversion violates the stepwise mutation model for microsatellites in Y-chromosomal palindromic repeats
    • [37] Balaresque, P., King, T.E., Parki, E.J., Heyer, E., Carvalho-Silva, D., Kraaijenbrink, T., et al. Gene conversion violates the stepwise mutation model for microsatellites in Y-chromosomal palindromic repeats. Hum. Mutat. 35 (2014), 609–617.
    • (2014) Hum. Mutat. , vol.35 , pp. 609-617
    • Balaresque, P.1    King, T.E.2    Parki, E.J.3    Heyer, E.4    Carvalho-Silva, D.5    Kraaijenbrink, T.6
  • 38
    • 55349112202 scopus 로고    scopus 로고
    • Dynamic nature of the proximal AZFc region of the human Y chromosome: multiple independent deletion and duplication events revealed by microsatellite analysis
    • [38] Balaresque, P., Bowden, G.R., Parkin, E.J., Omran, G.A., Heyer, E., Quintana-Murci, L., et al. Dynamic nature of the proximal AZFc region of the human Y chromosome: multiple independent deletion and duplication events revealed by microsatellite analysis. Hum. Mutat. 29 (2008), 1171–1180.
    • (2008) Hum. Mutat. , vol.29 , pp. 1171-1180
    • Balaresque, P.1    Bowden, G.R.2    Parkin, E.J.3    Omran, G.A.4    Heyer, E.5    Quintana-Murci, L.6
  • 39
    • 0037161499 scopus 로고    scopus 로고
    • Somatic mutations at STR loci − a reason for three-allele pattern and mosaicism
    • [39] Rolf, B., Wiegand, P., Brinkmann, B., Somatic mutations at STR loci − a reason for three-allele pattern and mosaicism. Forensic Sci. Int. 126 (2002), 200–202.
    • (2002) Forensic Sci. Int. , vol.126 , pp. 200-202
    • Rolf, B.1    Wiegand, P.2    Brinkmann, B.3
  • 40
    • 0027161022 scopus 로고
    • Mutation of human short tandem repeats
    • [40] Weber, J.L., Wong, C., Mutation of human short tandem repeats. Hum. Mol. Genet. 8 (1993), 1123–1128.
    • (1993) Hum. Mol. Genet. , vol.8 , pp. 1123-1128
    • Weber, J.L.1    Wong, C.2
  • 41
    • 0034863508 scopus 로고    scopus 로고
    • Human mtDNA and Y-chromosome variation is correlated with matrilocal versus patrilocal residence
    • [41] Oota, H., Settheetham-Ishida, W., Tiwawech, D., Ishida, T., Stoneking, M., Human mtDNA and Y-chromosome variation is correlated with matrilocal versus patrilocal residence. Nat. Genet. 29 (2001), 20–21.
    • (2001) Nat. Genet. , vol.29 , pp. 20-21
    • Oota, H.1    Settheetham-Ishida, W.2    Tiwawech, D.3    Ishida, T.4    Stoneking, M.5
  • 42
    • 85008491718 scopus 로고    scopus 로고
    • (2009). Clans in Somalia. Vienna: Austrian Red Cross.
    • [42] J. Gundel (2009). Clans in Somalia. Vienna: Austrian Red Cross. http://www.ecoi.net/file_upload/90_1261130976_accord-report-clans-in-somalia-revised-edition-20091215.pdf.
    • Gundel, J.1
  • 45
    • 84900659352 scopus 로고    scopus 로고
    • Blood, Land, and Sex: Legal and Political Pluralism in Eritrea
    • Indiana University Press
    • [45] Favali, L., Pateman, R., Blood, Land, and Sex: Legal and Political Pluralism in Eritrea. 2003, Indiana University Press.
    • (2003)
    • Favali, L.1    Pateman, R.2
  • 46
    • 21744451176 scopus 로고    scopus 로고
    • Contrasting patterns of Y chromosome and mtDNA variation in Africa: evidence for sex-biased demographic processes
    • [46] Wood, E.T., Stover, D.A., Ehret, C., Destro-Bisol, G., Spedini, G., McLeod, H., et al. Contrasting patterns of Y chromosome and mtDNA variation in Africa: evidence for sex-biased demographic processes. Eur. J. Hum. Genet. 13 (2005), 867–876.
    • (2005) Eur. J. Hum. Genet. , vol.13 , pp. 867-876
    • Wood, E.T.1    Stover, D.A.2    Ehret, C.3    Destro-Bisol, G.4    Spedini, G.5    McLeod, H.6


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