Genome sequence of Halomonas sp. strain KO116, an ionic liquid-tolerant marine bacterium isolated from a lignin-enriched seawater microcosm

Genome Announcements

Volumn 3, Issue 3, 2015, Pages

  O'Dell, Kaela B ^a   Woo, Hannah L ^b   Utturkar, Sagar ^a   Klingeman, Dawn ^c   Brown, Steven D ^a,c   Hazen, Terry C ^a,b,c  

^a UNIVERSITY OF TENNESSEE   (United States)

^b University of Tennessee Knoxville   (United States)

^c OAK RIDGE NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85008457073     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00402-15     Document Type: Article

References (9)

1. Himmel ME, Ding S-Y, Johnson DK, Adney WS, Nimlos MR, Brady JW, Foust TD. 2007. Biomass recalcitrance: engineering plants and enzymes for biofuels production. Science 315:804-807. http://dx.doi.org/10.1126/science.1137016.
2. Cerniglia CE. 1992. Biodegradation of polycyclic aromatic hydrocarbons. Biodegradation 3:351-368. http://dx.doi.org/10.1007/BF00129093.
3. Gunny AA, Arbain D, Edwin Gumba R, Jong BC, Jamal P. 2014. Potential halophilic cellulases for in situ enzymatic saccharification of ionic liquids pretreated lignocelluloses. Bioresour Technol 155:177-181. http://dx.doi.org/10.1016/j.biortech.2013.12.101.
4. Dobson SJ, Franzmann PD. 1996. Unification of the genera Deleya (Baumann et al. 1983), Halomonas (Vreeland et al. 1980), and Halovibrio (Fendrich 1988) and the species Paracoccus halodenitrificans (Robinson and Gibbons 1952) into a single genus, Halomonas, and placement of the genus Zymobacter in the family Halomonadaceae. Int J Syst Bacteriol 46:550-558. http://dx.doi.org/10.1099/00207713-46-2-550.
5. Walker BJ, Abeel T, Shea T, Priest M, Abouelliel A, Sakthikumar S, Cuomo CA, Zeng Q, Wortman J, Young SK, Earl AM. 2014. Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement. PLoS One 9:e112963. http://dx.doi.org/10.1371/journal.pone.0112963.
6. Woo HL, Utturkar S, Klingeman D, Simmons BA, DeAngelis KM, Brown SD, Hazen TC. 2014. Draft genome sequence of the lignindegrading Burkholderia sp. strain LIG30, isolated from wet tropical forest soil. Genome Announc 2(3):e00637-14. http://dx.doi.org/10.1128/genomeA.00637-14.
7. Wang Q, Garrity GM, Tiedje JM, Cole JR. 2007. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73:5261-5267. http://dx.doi.org/10.1128/AEM.00062-07.
8. Richter M, Rosselló-Móra R. 2009. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci U S A 106: 19126-19131. http://dx.doi.org/10.1073/pnas.0906412106.
9. Ruegg TL, Kim E-M, Simmons BA, Keasling JD, Singer SW, Soon LT, Thelen MP. 2014. An auto-inducible mechanism for ionic liquid resistance in microbial biofuel production. Nat Commun 5:3490. http://dx.doi.org/10.1038/ncomms4490.