Bacterial whole genome-based phylogeny: Construction of a new benchmarking dataset and assessment of some existing methods

BMC Genomics

Volumn 18, Issue 1, 2017, Pages

  Ahrenfeldt, Johanne ^a   Skaarup, Carina ^a   Hasman, Henrik ^b   Pedersen, Anders Gorm ^a   Aarestrup, Frank Møller ^a   Lund, Ole ^a  

^a TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

^b STATENS SERUM INSTITUT   (Denmark)

Author keywords

Benchmark; Evolution; Phylogeny; WGS

Indexed keywords

RIFAMPICIN;

ARTICLE; BACTERIAL GENOME; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM CULTURE; BENCHMARKING; CONTROLLED STUDY; ESCHERICHIA COLI; EVOLUTION; IN VITRO STUDY; NONHUMAN; PHYLOGENY; WHOLE GENOME SEQUENCING; ARTIFACT; BACTERIUM; CLASSIFICATION; GENETIC DATABASE; GENETICS; GENOMICS; HIGH THROUGHPUT SEQUENCING; MOLECULAR EVOLUTION; MUTATION; MUTATION RATE; PROCEDURES; STANDARDS;

ARTIFACTS; BACTERIA; DATABASES, GENETIC; ESCHERICHIA COLI; EVOLUTION, MOLECULAR; GENOME, BACTERIAL; GENOMICS; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; MUTATION; MUTATION RATE; PHYLOGENY;

EID: 85008195214     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/s12864-016-3407-6     Document Type: Article

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