Draft genome sequence of a New Delhi metallo-β-lactamase-5 (NDM-5)-producing multidrugresistant Escherichia coli isolate

Genome Announcements

Volumn 3, Issue 2, 2016, Pages

  de Man, Tom J B ^a   Perry, K Allison ^a   Avillan, Johannetsy J ^a   Kamile Rasheed, J ^a   Limbago, Brandi M ^a  

^a NATIONAL CENTER FOR EMERGING AND ZOONOTIC INFECTIOUS DISEASES   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85007499958     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00017-15     Document Type: Article

References (13)

1. Bush K. 2010. Bench-to-bedside review: the role of β-lactamases in antibiotic-resistant gram-negative infections. Crit Care 14:224-232. http://dx.doi.org/10.1186/cc8892.
2. Perez F, van Duin D. 2013. Carbapenem-resistant Enterobacteriaceae: a menace to our most vulnerable patients. Cleve Clin J Med 80:225-233. http://dx.doi.org/10.3949/ccjm.80a.12182.
3. Nordmann P, Cuzon G, Naas T. 2009. The real threat of Klebsiella pneumoniae carbapenemase-producing bacteria. Lancet Infect Dis 9:228-236. http://dx.doi.org/10.1016/S1473-3099(09)70054-4.
4. K�ser CU, Ellington MJ, Peacock SJ. 2014. Whole-genome sequencing to control antimicrobial resistance. Trends Genet 30:401-407.
5. Epstein L, Hunter JC, Arwady MA, Tsai V, Stein L, Gribogiannis M, Frias M, Guh AY, Laufer AS, Black S, Pacilli M, Moulton-Meissner H, Rasheed JK, Avillan JJ, Kitchel B, Limbago BM, MacCannell D, Lonsway D, Noble-Wang J, Conway J, Conover C, Vernon M, Kallen AJ. 2014 New Delhi metallo-β-lactamase-producing carbapenem-resistant Escherichia coli associated with exposure to duodenoscopes. JAMA 312: 1447-1455. http://dx.doi.org/10.1001/jama.2014.12720.
6. Wirth T, Falush D, Lan R, Colles F, Mensa P, Wieler LH, Karch H, Reeves PR, Maiden MCJ, Ochman H, Achtman M. 2006. Sex and virulence in Escherichia coli: an evolutionary perspective. Mol Microbiol 60:1136-1151. http://dx.doi.org/10.1111/j.1365-2958.2006.05172.x.
7. Guenther S, Aschenbrenner K, Stamm I, Bethe A, Semmler T, Stubbe A, Stubbe M, Batsajkhan N, Glupczynski Y, Wieler LH, Ewers C. 2012. Comparable high rates of extended-spectrum-beta-lactamase-producing Escherichia coli in birds of prey from Germany and Mongolia. PLoS One 7:e53039. http://dx.doi.org/10.1371/journal.pone.0053039.
8. CMY-42 among Escherichia coli ST167 clinical isolates. BMC Microbiol 13: 282-289. http://dx.doi.org/10.1186/1471-2180-13-282.
9. Cuzon G, Bonnin RA, Nordmann P. 2013. First identification of novel NDM carbapenemase, NDM-7, in Escherichia coli in France. PLoS One 8:e61322. http://dx.doi.org/10.1371/journal.pone.0061322.
10. Delcher AL, Bratke KA, Powers EC, Salzberg SL. 2007. Identifying bacterial genes and endosymbiont DNA with glimmer. Bioinformatics 23:673-679. http://dx.doi.org/10.1093/bioinformatics/btm009.
11. Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25: 955-964. http://dx.doi.org/10.1093/nar/25.5.0955.
12. Lagesen K, Hallin P, R�dland EA, Staerfeldt HH, Rognes T, Ussery DW. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res 35:3100-3108. http://dx.doi.org/10.1093/nar/gkm160.
13. Zankari E, Hasman H, Cosentino S, Vestergaard M, Rasmussen S, Lund O, Aarestrup FM, Larsen MV. 2012. Identification of acquired antimicrobial resistance genes. J Antimicrob Chemother 67:2640-2644. http://dx.doi.org/10.1093/jac/dks261.